EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000018342 (Gene tree)
Gene ID: 102309294
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 8258 bases
Position: chrJH425950.1:226868-235125
Accession: 102309294
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000016396	RRM_1	PF00076.22	5e-13	1	1
ENSHBUP00000032203	RRM_1	PF00076.22	5.5e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000024932	-	2701	XM_014329695	ENSHBUP00000032203	325 (aa)	XP_014185181	-
ENSHBUT00000024907	-	2657	XM_005948624	ENSHBUP00000016396	306 (aa)	XP_005948686	UPI0006C9D222

Gene Model

Click here to download ENSHBUG00000018342's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018342's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000018342	-	95	46.926	ENSHBUG00000010040	-	74	54.505
ENSHBUG00000018342	-	99	67.456	ENSHBUG00000010527	-	94	68.168
ENSHBUG00000018342	-	95	48.232	ENSHBUG00000015412	-	73	56.881
ENSHBUG00000018342	-	74	44.167	ENSHBUG00000021321	raly	64	50.485

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018342	-	92	50.000	ENSG00000184672	RALYL	93	78.481	Homo_sapiens
ENSHBUG00000018342	-	100	89.902	ENSAPOG00000006963	hnrnpc	100	88.274	Acanthochromis_polyacanthus
ENSHBUG00000018342	-	99	66.964	ENSACIG00000016568	-	98	69.759	Amphilophus_citrinellus
ENSHBUG00000018342	-	96	95.652	ENSACIG00000000270	-	100	95.652	Amphilophus_citrinellus
ENSHBUG00000018342	-	100	89.577	ENSAOCG00000003896	-	100	87.948	Amphiprion_ocellaris
ENSHBUG00000018342	-	82	81.028	ENSAOCG00000021616	-	96	67.155	Amphiprion_ocellaris
ENSHBUG00000018342	-	100	89.577	ENSAPEG00000001489	-	100	87.948	Amphiprion_percula
ENSHBUG00000018342	-	83	82.101	ENSAPEG00000019962	-	81	83.794	Amphiprion_percula
ENSHBUG00000018342	-	85	80.827	ENSATEG00000018006	-	76	88.462	Anabas_testudineus
ENSHBUG00000018342	-	92	92.958	ENSATEG00000011734	-	100	88.997	Anabas_testudineus
ENSHBUG00000018342	-	77	46.768	ENSAPLG00000015574	RALYL	75	54.505	Anas_platyrhynchos
ENSHBUG00000018342	-	77	46.008	ENSACAG00000028464	RALYL	74	54.783	Anolis_carolinensis
ENSHBUG00000018342	-	92	49.648	ENSANAG00000023383	RALYL	73	55.251	Aotus_nancymaae
ENSHBUG00000018342	-	100	99.673	ENSACLG00000000995	-	100	99.673	Astatotilapia_calliptera
ENSHBUG00000018342	-	100	99.346	ENSACLG00000013636	-	96	96.516	Astatotilapia_calliptera
ENSHBUG00000018342	-	85	79.699	ENSACLG00000005707	-	86	83.004	Astatotilapia_calliptera
ENSHBUG00000018342	-	85	80.000	ENSAMXG00000034915	zgc:55733	86	77.912	Astyanax_mexicanus
ENSHBUG00000018342	-	68	80.952	ENSAMXG00000042946	hnrnpc	95	74.194	Astyanax_mexicanus
ENSHBUG00000018342	-	92	49.648	ENSCJAG00000000402	RALYL	73	55.251	Callithrix_jacchus
ENSHBUG00000018342	-	95	43.168	ENSCPOG00000012314	RALYL	74	54.783	Cavia_porcellus
ENSHBUG00000018342	-	92	50.352	ENSCCAG00000025003	RALYL	77	78.481	Cebus_capucinus
ENSHBUG00000018342	-	92	50.000	ENSCATG00000042145	RALYL	73	55.708	Cercocebus_atys
ENSHBUG00000018342	-	72	52.743	ENSCLAG00000005228	RALYL	74	54.783	Chinchilla_lanigera
ENSHBUG00000018342	-	74	47.410	ENSCHOG00000013228	RALYL	74	52.174	Choloepus_hoffmanni
ENSHBUG00000018342	-	92	50.000	ENSCANG00000039144	RALYL	73	55.708	Colobus_angolensis_palliatus
ENSHBUG00000018342	-	77	47.148	ENSCGRG00001009241	Ralyl	74	55.652	Cricetulus_griseus_chok1gshd
ENSHBUG00000018342	-	98	70.032	ENSCSEG00000021349	-	90	70.345	Cynoglossus_semilaevis
ENSHBUG00000018342	-	70	80.734	ENSCSEG00000019769	-	70	81.731	Cynoglossus_semilaevis
ENSHBUG00000018342	-	96	73.649	ENSCVAG00000002797	-	91	75.185	Cyprinodon_variegatus
ENSHBUG00000018342	-	82	83.137	ENSCVAG00000016981	-	87	75.088	Cyprinodon_variegatus
ENSHBUG00000018342	-	91	80.287	ENSDARG00000103845	zgc:55733	90	81.124	Danio_rerio
ENSHBUG00000018342	-	78	81.405	ENSDARG00000053810	hnrnpc	78	79.762	Danio_rerio
ENSHBUG00000018342	-	77	47.529	ENSDORG00000003721	Ralyl	74	55.652	Dipodomys_ordii
ENSHBUG00000018342	-	53	56.897	ENSETEG00000014028	RALYL	83	60.123	Echinops_telfairi
ENSHBUG00000018342	-	74	45.643	ENSEBUG00000012363	hnrnpc	64	45.662	Eptatretus_burgeri
ENSHBUG00000018342	-	94	41.234	ENSEBUG00000006049	RALYL	73	48.095	Eptatretus_burgeri
ENSHBUG00000018342	-	72	52.941	ENSEEUG00000007202	RALYL	76	55.895	Erinaceus_europaeus
ENSHBUG00000018342	-	83	82.593	ENSELUG00000007714	-	88	83.012	Esox_lucius
ENSHBUG00000018342	-	92	72.039	ENSELUG00000004132	-	87	78.682	Esox_lucius
ENSHBUG00000018342	-	74	52.500	ENSFALG00000008647	RALYL	96	57.547	Ficedula_albicollis
ENSHBUG00000018342	-	99	62.535	ENSFHEG00000007278	-	98	66.873	Fundulus_heteroclitus
ENSHBUG00000018342	-	92	87.676	ENSFHEG00000003605	-	93	87.676	Fundulus_heteroclitus
ENSHBUG00000018342	-	77	50.196	ENSGALG00000036938	RALYL	74	54.505	Gallus_gallus
ENSHBUG00000018342	-	83	80.156	ENSGAFG00000020992	-	82	80.632	Gambusia_affinis
ENSHBUG00000018342	-	100	84.365	ENSGAFG00000020486	-	100	85.668	Gambusia_affinis
ENSHBUG00000018342	-	86	78.439	ENSGACG00000017772	-	96	79.762	Gasterosteus_aculeatus
ENSHBUG00000018342	-	70	74.324	ENSGACG00000018932	-	83	73.913	Gasterosteus_aculeatus
ENSHBUG00000018342	-	92	50.000	ENSGGOG00000000841	RALYL	73	55.708	Gorilla_gorilla
ENSHBUG00000018342	-	72	52.321	ENSHGLG00000004866	RALYL	74	54.348	Heterocephalus_glaber_female
ENSHBUG00000018342	-	72	52.321	ENSHGLG00100017480	RALYL	74	54.348	Heterocephalus_glaber_male
ENSHBUG00000018342	-	84	77.122	ENSHCOG00000012333	hnrnpc	86	75.472	Hippocampus_comes
ENSHBUG00000018342	-	84	81.783	ENSIPUG00000011271	hnrnpc	95	82.569	Ictalurus_punctatus
ENSHBUG00000018342	-	86	79.167	ENSIPUG00000008666	zgc:55733	91	85.024	Ictalurus_punctatus
ENSHBUG00000018342	-	77	47.148	ENSSTOG00000012583	RALYL	76	55.217	Ictidomys_tridecemlineatus
ENSHBUG00000018342	-	98	65.774	ENSKMAG00000018265	-	78	79.921	Kryptolebias_marmoratus
ENSHBUG00000018342	-	92	89.680	ENSKMAG00000011170	-	91	87.986	Kryptolebias_marmoratus
ENSHBUG00000018342	-	88	85.926	ENSLBEG00000006979	-	99	79.522	Labrus_bergylta
ENSHBUG00000018342	-	85	79.389	ENSLBEG00000006193	-	79	80.237	Labrus_bergylta
ENSHBUG00000018342	-	95	75.563	ENSLBEG00000024418	-	99	77.483	Labrus_bergylta
ENSHBUG00000018342	-	85	71.218	ENSLOCG00000002560	hnrnpc	88	71.206	Lepisosteus_oculatus
ENSHBUG00000018342	-	92	50.000	ENSMNEG00000033288	RALYL	73	55.708	Macaca_nemestrina
ENSHBUG00000018342	-	92	50.000	ENSMLEG00000038284	RALYL	73	55.708	Mandrillus_leucophaeus
ENSHBUG00000018342	-	92	91.197	ENSMAMG00000012236	-	92	90.845	Mastacembelus_armatus
ENSHBUG00000018342	-	85	80.827	ENSMAMG00000008033	-	88	81.961	Mastacembelus_armatus
ENSHBUG00000018342	-	99	67.160	ENSMZEG00005024249	-	80	83.004	Maylandia_zebra
ENSHBUG00000018342	-	100	99.673	ENSMZEG00005020460	-	100	99.673	Maylandia_zebra
ENSHBUG00000018342	-	77	47.148	ENSMAUG00000015149	Ralyl	74	55.652	Mesocricetus_auratus
ENSHBUG00000018342	-	72	56.637	ENSMICG00000005558	RALYL	80	78.481	Microcebus_murinus
ENSHBUG00000018342	-	77	47.148	ENSMOCG00000017371	Ralyl	74	55.652	Microtus_ochrogaster
ENSHBUG00000018342	-	83	93.333	ENSMMOG00000021465	-	88	93.200	Mola_mola
ENSHBUG00000018342	-	90	77.536	ENSMMOG00000019520	-	80	87.923	Mola_mola
ENSHBUG00000018342	-	96	81.973	ENSMALG00000007520	-	98	80.345	Monopterus_albus
ENSHBUG00000018342	-	85	83.270	ENSMALG00000014623	-	79	82.937	Monopterus_albus
ENSHBUG00000018342	-	77	46.768	ENSMUSG00000039717	Ralyl	93	77.215	Mus_musculus
ENSHBUG00000018342	-	72	53.361	ENSMPUG00000010724	RALYL	74	54.783	Mustela_putorius_furo
ENSHBUG00000018342	-	77	47.148	ENSNGAG00000013375	Ralyl	74	55.652	Nannospalax_galili
ENSHBUG00000018342	-	99	66.962	ENSNBRG00000015676	-	95	68.367	Neolamprologus_brichardi
ENSHBUG00000018342	-	97	98.658	ENSNBRG00000004912	-	99	98.658	Neolamprologus_brichardi
ENSHBUG00000018342	-	92	50.000	ENSNLEG00000002702	RALYL	70	55.708	Nomascus_leucogenys
ENSHBUG00000018342	-	58	50.777	ENSOPRG00000013650	-	98	48.500	Ochotona_princeps
ENSHBUG00000018342	-	96	43.827	ENSODEG00000001012	RALYL	74	54.348	Octodon_degus
ENSHBUG00000018342	-	99	66.272	ENSONIG00000018350	-	96	67.751	Oreochromis_niloticus
ENSHBUG00000018342	-	99	96.785	ENSONIG00000007859	-	100	96.785	Oreochromis_niloticus
ENSHBUG00000018342	-	98	67.052	ENSORLG00000003144	-	78	80.843	Oryzias_latipes
ENSHBUG00000018342	-	100	76.623	ENSORLG00000009999	-	100	75.649	Oryzias_latipes
ENSHBUG00000018342	-	100	76.299	ENSORLG00020018228	hnrnpc	100	75.325	Oryzias_latipes_hni
ENSHBUG00000018342	-	100	76.623	ENSORLG00015019755	-	100	75.649	Oryzias_latipes_hsok
ENSHBUG00000018342	-	98	65.517	ENSORLG00015009460	-	78	80.843	Oryzias_latipes_hsok
ENSHBUG00000018342	-	100	76.375	ENSOMEG00000020488	-	100	75.728	Oryzias_melastigma
ENSHBUG00000018342	-	98	69.048	ENSOMEG00000022665	-	79	83.465	Oryzias_melastigma
ENSHBUG00000018342	-	92	50.000	ENSPPAG00000038705	RALYL	73	55.708	Pan_paniscus
ENSHBUG00000018342	-	72	55.947	ENSPPRG00000018612	RALYL	73	58.636	Panthera_pardus
ENSHBUG00000018342	-	72	55.947	ENSPTIG00000020331	RALYL	73	58.636	Panthera_tigris_altaica
ENSHBUG00000018342	-	92	50.000	ENSPTRG00000020381	RALYL	73	55.708	Pan_troglodytes
ENSHBUG00000018342	-	92	50.000	ENSPANG00000029305	RALYL	73	55.708	Papio_anubis
ENSHBUG00000018342	-	92	78.125	ENSPKIG00000022837	-	86	82.182	Paramormyrops_kingsleyae
ENSHBUG00000018342	-	91	80.139	ENSPKIG00000008592	-	87	81.159	Paramormyrops_kingsleyae
ENSHBUG00000018342	-	77	46.768	ENSPSIG00000011135	RALYL	74	55.217	Pelodiscus_sinensis
ENSHBUG00000018342	-	98	58.438	ENSPMGG00000017774	-	86	67.788	Periophthalmus_magnuspinnatus
ENSHBUG00000018342	-	71	89.041	ENSPMGG00000013144	-	78	85.507	Periophthalmus_magnuspinnatus
ENSHBUG00000018342	-	77	47.148	ENSPEMG00000016447	Ralyl	74	55.652	Peromyscus_maniculatus_bairdii
ENSHBUG00000018342	-	74	48.627	ENSPMAG00000002407	RALYL	96	51.502	Petromyzon_marinus
ENSHBUG00000018342	-	100	86.688	ENSPFOG00000001583	-	100	87.338	Poecilia_formosa
ENSHBUG00000018342	-	95	68.285	ENSPFOG00000002643	-	80	79.767	Poecilia_formosa
ENSHBUG00000018342	-	82	80.237	ENSPLAG00000000061	-	86	75.445	Poecilia_latipinna
ENSHBUG00000018342	-	100	85.668	ENSPLAG00000015305	-	100	86.319	Poecilia_latipinna
ENSHBUG00000018342	-	82	79.842	ENSPMEG00000016524	-	78	80.632	Poecilia_mexicana
ENSHBUG00000018342	-	100	86.319	ENSPMEG00000004802	-	100	86.971	Poecilia_mexicana
ENSHBUG00000018342	-	87	78.358	ENSPREG00000001852	-	84	80.632	Poecilia_reticulata
ENSHBUG00000018342	-	92	88.732	ENSPREG00000007928	-	93	88.732	Poecilia_reticulata
ENSHBUG00000018342	-	61	78.495	ENSPPYG00000018710	-	67	47.596	Pongo_abelii
ENSHBUG00000018342	-	72	52.321	ENSPVAG00000010821	RALYL	78	52.790	Pteropus_vampyrus
ENSHBUG00000018342	-	91	96.390	ENSPNYG00000020293	-	95	96.390	Pundamilia_nyererei
ENSHBUG00000018342	-	85	80.075	ENSPNYG00000003747	-	85	82.745	Pundamilia_nyererei
ENSHBUG00000018342	-	86	77.860	ENSPNAG00000019200	zgc:55733	81	74.902	Pygocentrus_nattereri
ENSHBUG00000018342	-	77	85.593	ENSPNAG00000015686	hnrnpc	84	81.673	Pygocentrus_nattereri
ENSHBUG00000018342	-	92	50.000	ENSRROG00000023925	RALYL	82	76.543	Rhinopithecus_roxellana
ENSHBUG00000018342	-	98	67.665	ENSSFOG00015012015	-	80	86.124	Scleropages_formosus
ENSHBUG00000018342	-	82	79.693	ENSSFOG00015012924	-	80	96.203	Scleropages_formosus
ENSHBUG00000018342	-	99	66.181	ENSSMAG00000011147	-	77	85.646	Scophthalmus_maximus
ENSHBUG00000018342	-	95	82.550	ENSSMAG00000013592	-	99	82.051	Scophthalmus_maximus
ENSHBUG00000018342	-	85	82.576	ENSSDUG00000006730	-	80	81.423	Seriola_dumerili
ENSHBUG00000018342	-	100	89.902	ENSSDUG00000001723	-	100	88.599	Seriola_dumerili
ENSHBUG00000018342	-	91	92.806	ENSSLDG00000007454	-	87	92.075	Seriola_lalandi_dorsalis
ENSHBUG00000018342	-	85	82.576	ENSSLDG00000007474	-	87	81.423	Seriola_lalandi_dorsalis
ENSHBUG00000018342	-	92	94.643	ENSSPAG00000023204	-	100	89.577	Stegastes_partitus
ENSHBUG00000018342	-	85	81.061	ENSSPAG00000013996	-	79	82.213	Stegastes_partitus
ENSHBUG00000018342	-	71	52.790	ENSTGUG00000011689	RALYL	76	54.505	Taeniopygia_guttata
ENSHBUG00000018342	-	83	85.827	ENSTRUG00000020158	-	82	85.200	Takifugu_rubripes
ENSHBUG00000018342	-	93	71.280	ENSTNIG00000000334	-	93	74.419	Tetraodon_nigroviridis
ENSHBUG00000018342	-	83	82.692	ENSTNIG00000007427	-	83	80.000	Tetraodon_nigroviridis
ENSHBUG00000018342	-	70	48.927	ENSTBEG00000005551	RALYL	86	47.826	Tupaia_belangeri
ENSHBUG00000018342	-	77	45.113	ENSTTRG00000015762	RALYL	74	53.241	Tursiops_truncatus
ENSHBUG00000018342	-	72	51.327	ENSVPAG00000008501	RALYL	74	54.338	Vicugna_pacos
ENSHBUG00000018342	-	86	82.264	ENSXCOG00000006552	-	81	82.072	Xiphophorus_couchianus
ENSHBUG00000018342	-	50	88.344	ENSXCOG00000019434	-	71	87.952	Xiphophorus_couchianus
ENSHBUG00000018342	-	82	79.447	ENSXMAG00000022849	-	82	80.237	Xiphophorus_maculatus
ENSHBUG00000018342	-	100	84.691	ENSXMAG00000009333	-	100	85.342	Xiphophorus_maculatus