EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000018856 (Gene tree)
Gene ID: 102297588
Gene Symbol: snrnp70
Alias: U1 small ribonucleoprotein 70kd|snrp70|wu:fc20b04|zgc:136450
Full Name: small nuclear ribonucleoprotein U1 subunit 70
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 12080 bases
Position: chrJH426031.1:217413-229492
Accession: 102297588
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000032498	RRM_1	PF00076.22	1.4e-19	1	1
ENSHBUP00000016830	RRM_1	PF00076.22	1.4e-19	1	1
ENSHBUP00000032498	U1snRNP70_N	PF12220.8	7.3e-25	1	1
ENSHBUP00000016830	U1snRNP70_N	PF12220.8	7.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000025468	-	4972	XM_005949523	ENSHBUP00000032498	467 (aa)	XP_005949585	UPI0003BDB22A
ENSHBUT00000025465	-	1407	-	ENSHBUP00000016830	468 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000018856's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018856's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018856	snrnp70	100	88.085	ENSACIG00000017909	snrnp70	100	91.915	Amphilophus_citrinellus
ENSHBUG00000018856	snrnp70	100	80.892	ENSAPEG00000006219	snrnp70	100	85.835	Amphiprion_percula
ENSHBUG00000018856	snrnp70	100	97.263	ENSACLG00000011144	snrnp70	100	97.263	Astatotilapia_calliptera
ENSHBUG00000018856	snrnp70	53	48.996	WBGene00004390	rnp-7	56	51.075	Caenorhabditis_elegans
ENSHBUG00000018856	snrnp70	100	70.638	ENSFHEG00000010298	snrnp70	100	72.128	Fundulus_heteroclitus
ENSHBUG00000018856	snrnp70	100	77.186	ENSGAFG00000003395	snrnp70	100	74.573	Gambusia_affinis
ENSHBUG00000018856	snrnp70	100	76.059	ENSHCOG00000010270	snrnp70	100	74.947	Hippocampus_comes
ENSHBUG00000018856	snrnp70	100	86.653	ENSMAMG00000004556	snrnp70	100	85.805	Mastacembelus_armatus
ENSHBUG00000018856	snrnp70	100	98.932	ENSMZEG00005022849	snrnp70	100	98.932	Maylandia_zebra
ENSHBUG00000018856	snrnp70	74	91.304	ENSMALG00000002275	snrnp70	90	86.652	Monopterus_albus
ENSHBUG00000018856	snrnp70	100	77.070	ENSORLG00000017158	snrnp70	100	81.568	Oryzias_latipes
ENSHBUG00000018856	snrnp70	100	77.282	ENSORLG00015010817	snrnp70	100	81.780	Oryzias_latipes_hsok
ENSHBUG00000018856	snrnp70	100	84.582	ENSOMEG00000013002	snrnp70	100	84.368	Oryzias_melastigma
ENSHBUG00000018856	snrnp70	100	76.709	ENSPFOG00000016671	snrnp70	100	80.342	Poecilia_formosa
ENSHBUG00000018856	snrnp70	100	76.496	ENSPLAG00000005912	snrnp70	100	80.128	Poecilia_latipinna
ENSHBUG00000018856	snrnp70	100	76.709	ENSPMEG00000008496	snrnp70	100	80.342	Poecilia_mexicana
ENSHBUG00000018856	snrnp70	100	76.496	ENSPREG00000005486	snrnp70	100	80.128	Poecilia_reticulata
ENSHBUG00000018856	snrnp70	100	99.359	ENSPNYG00000003258	snrnp70	100	99.359	Pundamilia_nyererei
ENSHBUG00000018856	snrnp70	79	97.409	ENSSMAG00000013978	snrnp70	100	77.642	Scophthalmus_maximus
ENSHBUG00000018856	snrnp70	52	85.657	ENSSPUG00000016621	SNRNP70	64	82.900	Sphenodon_punctatus
ENSHBUG00000018856	snrnp70	100	81.450	ENSTRUG00000009202	snrnp70	100	74.359	Takifugu_rubripes
ENSHBUG00000018856	snrnp70	100	77.447	ENSXMAG00000012789	snrnp70	100	80.000	Xiphophorus_maculatus