EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000018900 (Gene tree)
Gene ID: 102306987
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 19665 bases
Position: chrJH425666.1:204611-224275
Accession: 102306987
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000016787	CPSF_A	PF03178.15	8.5e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000025414	-	4272	XM_005942583	ENSHBUP00000016787	1423 (aa)	XP_005942645	-
ENSHBUT00000025541	-	2073	-	ENSHBUP00000016882	199 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000018900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018900	cpsf1	100	79.322	ENSG00000071894	CPSF1	100	79.599	Homo_sapiens
ENSHBUG00000018900	cpsf1	100	91.644	ENSAPOG00000019621	cpsf1	100	92.052	Acanthochromis_polyacanthus
ENSHBUG00000018900	cpsf1	97	78.301	ENSAMEG00000005557	CPSF1	99	78.158	Ailuropoda_melanoleuca
ENSHBUG00000018900	cpsf1	100	94.228	ENSACIG00000006112	cpsf1	100	94.437	Amphilophus_citrinellus
ENSHBUG00000018900	cpsf1	100	93.158	ENSAOCG00000007120	cpsf1	100	93.089	Amphiprion_ocellaris
ENSHBUG00000018900	cpsf1	100	94.069	ENSAPEG00000005755	cpsf1	100	94.069	Amphiprion_percula
ENSHBUG00000018900	cpsf1	100	90.977	ENSATEG00000011097	cpsf1	100	91.045	Anabas_testudineus
ENSHBUG00000018900	cpsf1	93	75.297	ENSACAG00000009655	CPSF1	100	75.056	Anolis_carolinensis
ENSHBUG00000018900	cpsf1	100	79.516	ENSANAG00000036514	CPSF1	100	79.792	Aotus_nancymaae
ENSHBUG00000018900	cpsf1	100	95.854	ENSACLG00000012231	cpsf1	100	95.854	Astatotilapia_calliptera
ENSHBUG00000018900	cpsf1	100	80.976	ENSAMXG00000008485	cpsf1	100	80.976	Astyanax_mexicanus
ENSHBUG00000018900	cpsf1	100	78.329	ENSBTAG00000008355	CPSF1	100	79.080	Bos_taurus
ENSHBUG00000018900	cpsf1	100	32.692	WBGene00022301	cpsf-1	99	41.076	Caenorhabditis_elegans
ENSHBUG00000018900	cpsf1	100	79.862	ENSCJAG00000021421	CPSF1	100	79.723	Callithrix_jacchus
ENSHBUG00000018900	cpsf1	96	79.728	ENSCAFG00000001600	CPSF1	100	79.730	Canis_familiaris
ENSHBUG00000018900	cpsf1	100	79.198	ENSCAFG00020020821	CPSF1	100	79.337	Canis_lupus_dingo
ENSHBUG00000018900	cpsf1	100	75.986	ENSCHIG00000015833	CPSF1	100	75.623	Capra_hircus
ENSHBUG00000018900	cpsf1	100	80.208	ENSTSYG00000028560	CPSF1	100	80.093	Carlito_syrichta
ENSHBUG00000018900	cpsf1	97	79.328	ENSCAPG00000014921	CPSF1	99	79.185	Cavia_aperea
ENSHBUG00000018900	cpsf1	100	78.685	ENSCPOG00000011448	CPSF1	100	78.547	Cavia_porcellus
ENSHBUG00000018900	cpsf1	100	80.069	ENSCCAG00000037658	CPSF1	100	79.792	Cebus_capucinus
ENSHBUG00000018900	cpsf1	100	79.129	ENSCATG00000037234	CPSF1	100	79.446	Cercocebus_atys
ENSHBUG00000018900	cpsf1	100	80.125	ENSCLAG00000012166	CPSF1	100	79.986	Chinchilla_lanigera
ENSHBUG00000018900	cpsf1	100	79.723	ENSCSAG00000008502	CPSF1	100	79.585	Chlorocebus_sabaeus
ENSHBUG00000018900	cpsf1	99	81.342	ENSCPBG00000018910	CPSF1	96	81.551	Chrysemys_picta_bellii
ENSHBUG00000018900	cpsf1	96	48.812	ENSCING00000000514	-	100	48.740	Ciona_intestinalis
ENSHBUG00000018900	cpsf1	99	49.275	ENSCSAVG00000002293	-	99	53.241	Ciona_savignyi
ENSHBUG00000018900	cpsf1	98	76.500	ENSCANG00000032760	CPSF1	100	79.630	Colobus_angolensis_palliatus
ENSHBUG00000018900	cpsf1	100	79.778	ENSCGRG00001016344	Cpsf1	100	79.432	Cricetulus_griseus_chok1gshd
ENSHBUG00000018900	cpsf1	100	78.116	ENSCGRG00000003118	Cpsf1	100	77.770	Cricetulus_griseus_crigri
ENSHBUG00000018900	cpsf1	100	89.503	ENSCSEG00000013464	cpsf1	100	89.573	Cynoglossus_semilaevis
ENSHBUG00000018900	cpsf1	85	87.411	ENSCVAG00000014059	cpsf1	100	81.481	Cyprinodon_variegatus
ENSHBUG00000018900	cpsf1	100	87.388	ENSDARG00000034178	cpsf1	100	87.388	Danio_rerio
ENSHBUG00000018900	cpsf1	56	82.659	ENSDNOG00000043654	CPSF1	94	82.370	Dasypus_novemcinctus
ENSHBUG00000018900	cpsf1	96	79.914	ENSDORG00000006278	Cpsf1	99	79.770	Dipodomys_ordii
ENSHBUG00000018900	cpsf1	100	44.250	FBgn0024698	Cpsf160	100	44.213	Drosophila_melanogaster
ENSHBUG00000018900	cpsf1	80	83.893	ENSETEG00000006022	CPSF1	83	83.893	Echinops_telfairi
ENSHBUG00000018900	cpsf1	100	79.613	ENSEASG00005010774	CPSF1	100	79.682	Equus_asinus_asinus
ENSHBUG00000018900	cpsf1	100	79.475	ENSECAG00000022209	CPSF1	100	79.544	Equus_caballus
ENSHBUG00000018900	cpsf1	100	79.627	ENSEEUG00000000471	CPSF1	100	79.213	Erinaceus_europaeus
ENSHBUG00000018900	cpsf1	100	86.740	ENSELUG00000012271	cpsf1	100	86.948	Esox_lucius
ENSHBUG00000018900	cpsf1	100	80.194	ENSFDAG00000016060	CPSF1	100	80.055	Fukomys_damarensis
ENSHBUG00000018900	cpsf1	100	89.701	ENSFHEG00000016801	cpsf1	100	89.694	Fundulus_heteroclitus
ENSHBUG00000018900	cpsf1	100	87.474	ENSGMOG00000000796	cpsf1	100	87.474	Gadus_morhua
ENSHBUG00000018900	cpsf1	95	87.699	ENSGAFG00000018890	cpsf1	100	87.851	Gambusia_affinis
ENSHBUG00000018900	cpsf1	100	90.152	ENSGACG00000008703	cpsf1	100	90.062	Gasterosteus_aculeatus
ENSHBUG00000018900	cpsf1	100	78.547	ENSGAGG00000004276	CPSF1	98	82.245	Gopherus_agassizii
ENSHBUG00000018900	cpsf1	100	79.363	ENSGGOG00000016185	CPSF1	100	79.571	Gorilla_gorilla
ENSHBUG00000018900	cpsf1	100	80.125	ENSHGLG00000016139	CPSF1	100	79.986	Heterocephalus_glaber_female
ENSHBUG00000018900	cpsf1	100	80.055	ENSHGLG00100009750	CPSF1	100	79.917	Heterocephalus_glaber_male
ENSHBUG00000018900	cpsf1	100	87.730	ENSHCOG00000018509	cpsf1	100	87.935	Hippocampus_comes
ENSHBUG00000018900	cpsf1	100	83.379	ENSIPUG00000011259	cpsf1	100	83.310	Ictalurus_punctatus
ENSHBUG00000018900	cpsf1	97	79.330	ENSSTOG00000009957	CPSF1	99	79.473	Ictidomys_tridecemlineatus
ENSHBUG00000018900	cpsf1	100	79.917	ENSJJAG00000023002	Cpsf1	100	79.778	Jaculus_jaculus
ENSHBUG00000018900	cpsf1	91	93.103	ENSKMAG00000001940	cpsf1	99	93.103	Kryptolebias_marmoratus
ENSHBUG00000018900	cpsf1	100	89.591	ENSLBEG00000003601	cpsf1	100	89.789	Labrus_bergylta
ENSHBUG00000018900	cpsf1	88	79.401	ENSLACG00000000233	CPSF1	100	67.405	Latimeria_chalumnae
ENSHBUG00000018900	cpsf1	100	83.299	ENSLOCG00000008484	cpsf1	100	83.713	Lepisosteus_oculatus
ENSHBUG00000018900	cpsf1	97	79.429	ENSLAFG00000022601	CPSF1	100	79.429	Loxodonta_africana
ENSHBUG00000018900	cpsf1	100	79.239	ENSMFAG00000037013	CPSF1	100	79.516	Macaca_fascicularis
ENSHBUG00000018900	cpsf1	100	79.525	ENSMMUG00000007380	CPSF1	100	79.804	Macaca_mulatta
ENSHBUG00000018900	cpsf1	96	79.785	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSHBUG00000018900	cpsf1	100	79.239	ENSMLEG00000043010	CPSF1	100	79.516	Mandrillus_leucophaeus
ENSHBUG00000018900	cpsf1	100	91.712	ENSMAMG00000003803	cpsf1	100	91.848	Mastacembelus_armatus
ENSHBUG00000018900	cpsf1	100	95.924	ENSMZEG00005001168	cpsf1	100	95.924	Maylandia_zebra
ENSHBUG00000018900	cpsf1	100	79.778	ENSMAUG00000003601	Cpsf1	100	79.571	Mesocricetus_auratus
ENSHBUG00000018900	cpsf1	100	79.571	ENSMICG00000015767	CPSF1	100	79.501	Microcebus_murinus
ENSHBUG00000018900	cpsf1	100	79.501	ENSMOCG00000022758	Cpsf1	100	79.363	Microtus_ochrogaster
ENSHBUG00000018900	cpsf1	100	93.022	ENSMMOG00000021245	cpsf1	100	92.812	Mola_mola
ENSHBUG00000018900	cpsf1	100	79.821	ENSMODG00000010755	CPSF1	100	79.890	Monodelphis_domestica
ENSHBUG00000018900	cpsf1	100	91.565	ENSMALG00000020545	cpsf1	100	91.361	Monopterus_albus
ENSHBUG00000018900	cpsf1	100	80.055	MGP_CAROLIEiJ_G0019936	Cpsf1	100	79.917	Mus_caroli
ENSHBUG00000018900	cpsf1	100	80.055	ENSMUSG00000034022	Cpsf1	100	79.917	Mus_musculus
ENSHBUG00000018900	cpsf1	100	80.125	MGP_PahariEiJ_G0019946	Cpsf1	100	79.986	Mus_pahari
ENSHBUG00000018900	cpsf1	100	80.125	MGP_SPRETEiJ_G0020839	Cpsf1	100	79.986	Mus_spretus
ENSHBUG00000018900	cpsf1	94	79.793	ENSMPUG00000006419	CPSF1	93	80.015	Mustela_putorius_furo
ENSHBUG00000018900	cpsf1	100	79.778	ENSNGAG00000022460	Cpsf1	100	79.640	Nannospalax_galili
ENSHBUG00000018900	cpsf1	100	91.474	ENSNBRG00000000813	cpsf1	100	91.474	Neolamprologus_brichardi
ENSHBUG00000018900	cpsf1	86	69.369	ENSNLEG00000010633	-	100	79.167	Nomascus_leucogenys
ENSHBUG00000018900	cpsf1	82	86.047	ENSMEUG00000014922	CPSF1	85	86.047	Notamacropus_eugenii
ENSHBUG00000018900	cpsf1	60	89.474	ENSOPRG00000004693	-	70	89.474	Ochotona_princeps
ENSHBUG00000018900	cpsf1	100	80.194	ENSODEG00000013995	CPSF1	100	79.778	Octodon_degus
ENSHBUG00000018900	cpsf1	100	97.920	ENSONIG00000007676	cpsf1	100	97.920	Oreochromis_niloticus
ENSHBUG00000018900	cpsf1	58	77.143	ENSOANG00000010716	CPSF1	89	77.143	Ornithorhynchus_anatinus
ENSHBUG00000018900	cpsf1	100	89.405	ENSORLG00000013544	cpsf1	100	89.405	Oryzias_latipes
ENSHBUG00000018900	cpsf1	100	89.405	ENSORLG00020021693	cpsf1	100	89.405	Oryzias_latipes_hni
ENSHBUG00000018900	cpsf1	100	89.474	ENSORLG00015009979	cpsf1	100	89.474	Oryzias_latipes_hsok
ENSHBUG00000018900	cpsf1	100	89.665	ENSOMEG00000011849	cpsf1	100	89.802	Oryzias_melastigma
ENSHBUG00000018900	cpsf1	100	79.931	ENSOGAG00000000315	CPSF1	100	79.792	Otolemur_garnettii
ENSHBUG00000018900	cpsf1	100	79.377	ENSPPAG00000019280	CPSF1	100	80.543	Pan_paniscus
ENSHBUG00000018900	cpsf1	100	78.027	ENSPTRG00000051253	-	100	80.543	Pan_troglodytes
ENSHBUG00000018900	cpsf1	100	79.377	ENSPTRG00000049288	-	100	80.543	Pan_troglodytes
ENSHBUG00000018900	cpsf1	97	79.671	ENSPANG00000015005	CPSF1	100	79.167	Papio_anubis
ENSHBUG00000018900	cpsf1	100	87.206	ENSPKIG00000002582	cpsf1	100	87.718	Paramormyrops_kingsleyae
ENSHBUG00000018900	cpsf1	100	79.959	ENSPCIG00000009035	CPSF1	100	80.028	Phascolarctos_cinereus
ENSHBUG00000018900	cpsf1	100	88.367	ENSPFOG00000012870	cpsf1	100	88.299	Poecilia_formosa
ENSHBUG00000018900	cpsf1	100	88.035	ENSPREG00000016307	cpsf1	100	87.967	Poecilia_reticulata
ENSHBUG00000018900	cpsf1	100	72.752	ENSPPYG00000018973	CPSF1	100	72.476	Pongo_abelii
ENSHBUG00000018900	cpsf1	91	84.659	ENSPCAG00000011541	CPSF1	94	84.659	Procavia_capensis
ENSHBUG00000018900	cpsf1	100	76.299	ENSPCOG00000020001	CPSF1	100	79.167	Propithecus_coquereli
ENSHBUG00000018900	cpsf1	90	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSHBUG00000018900	cpsf1	100	98.336	ENSPNYG00000004906	cpsf1	100	98.336	Pundamilia_nyererei
ENSHBUG00000018900	cpsf1	100	83.578	ENSPNAG00000024395	cpsf1	100	83.578	Pygocentrus_nattereri
ENSHBUG00000018900	cpsf1	100	80.028	ENSRNOG00000030705	Cpsf1	100	79.889	Rattus_norvegicus
ENSHBUG00000018900	cpsf1	100	79.308	ENSRBIG00000044907	CPSF1	100	79.630	Rhinopithecus_bieti
ENSHBUG00000018900	cpsf1	100	79.377	ENSRROG00000044861	CPSF1	100	79.654	Rhinopithecus_roxellana
ENSHBUG00000018900	cpsf1	96	80.215	ENSSBOG00000027177	CPSF1	99	80.072	Saimiri_boliviensis_boliviensis
ENSHBUG00000018900	cpsf1	100	79.821	ENSSHAG00000006500	CPSF1	100	80.028	Sarcophilus_harrisii
ENSHBUG00000018900	cpsf1	100	84.828	ENSSFOG00015004606	cpsf1	100	87.910	Scleropages_formosus
ENSHBUG00000018900	cpsf1	100	90.680	ENSSMAG00000020547	cpsf1	100	90.680	Scophthalmus_maximus
ENSHBUG00000018900	cpsf1	100	94.534	ENSSDUG00000001100	cpsf1	100	94.394	Seriola_dumerili
ENSHBUG00000018900	cpsf1	100	94.394	ENSSLDG00000003619	cpsf1	100	94.674	Seriola_lalandi_dorsalis
ENSHBUG00000018900	cpsf1	89	76.855	ENSSARG00000003643	CPSF1	92	76.774	Sorex_araneus
ENSHBUG00000018900	cpsf1	96	82.721	ENSSPUG00000014396	CPSF1	99	82.289	Sphenodon_punctatus
ENSHBUG00000018900	cpsf1	100	92.454	ENSSPAG00000005349	cpsf1	100	92.454	Stegastes_partitus
ENSHBUG00000018900	cpsf1	100	78.438	ENSSSCG00000005906	CPSF1	100	78.507	Sus_scrofa
ENSHBUG00000018900	cpsf1	96	89.022	ENSTRUG00000013134	cpsf1	99	88.670	Takifugu_rubripes
ENSHBUG00000018900	cpsf1	100	90.103	ENSTNIG00000014027	cpsf1	100	90.103	Tetraodon_nigroviridis
ENSHBUG00000018900	cpsf1	77	74.611	ENSTBEG00000001756	CPSF1	91	74.266	Tupaia_belangeri
ENSHBUG00000018900	cpsf1	89	84.138	ENSTTRG00000001937	CPSF1	90	83.966	Tursiops_truncatus
ENSHBUG00000018900	cpsf1	97	79.857	ENSUAMG00000006476	CPSF1	98	79.714	Ursus_americanus
ENSHBUG00000018900	cpsf1	100	89.525	ENSXCOG00000003608	cpsf1	100	89.595	Xiphophorus_couchianus
ENSHBUG00000018900	cpsf1	100	88.657	ENSXMAG00000005798	cpsf1	100	88.796	Xiphophorus_maculatus