EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000018944 (Gene tree)
Gene ID: 102294605
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 9422 bases
Position: chrJH425563.1:499171-508592
Accession: 102294605
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000016913	RRM_1	PF00076.22	9.1e-31	1	2
ENSHBUP00000016913	RRM_1	PF00076.22	9.1e-31	2	2
ENSHBUP00000016938	RRM_1	PF00076.22	1.6e-30	1	2
ENSHBUP00000016938	RRM_1	PF00076.22	1.6e-30	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000025601	-	2788	XM_005938197	ENSHBUP00000016938	340 (aa)	XP_005938259	UPI00032A276D
ENSHBUT00000025569	-	864	-	ENSHBUP00000016913	287 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000018944's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018944's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000018944	trnau1apb	83	31.034	ENSHBUG00000000813	tial1	87	31.034
ENSHBUG00000018944	trnau1apb	97	46.732	ENSHBUG00000002510	trnau1apa	98	46.732
ENSHBUG00000018944	trnau1apb	77	33.577	ENSHBUG00000023154	-	81	33.577

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018944	trnau1apb	99	76.991	ENSAPOG00000010086	trnau1apb	100	79.646	Acanthochromis_polyacanthus
ENSHBUG00000018944	trnau1apb	99	88.791	ENSACIG00000001863	trnau1apb	100	88.791	Amphilophus_citrinellus
ENSHBUG00000018944	trnau1apb	99	92.353	ENSAOCG00000011891	trnau1apb	100	93.235	Amphiprion_ocellaris
ENSHBUG00000018944	trnau1apb	99	81.765	ENSAPEG00000008029	trnau1apb	100	92.353	Amphiprion_percula
ENSHBUG00000018944	trnau1apb	99	90.294	ENSATEG00000002196	trnau1apb	100	91.176	Anabas_testudineus
ENSHBUG00000018944	trnau1apb	99	90.058	ENSACLG00000003016	trnau1apb	100	90.058	Astatotilapia_calliptera
ENSHBUG00000018944	trnau1apb	99	64.497	ENSAMXG00000001805	trnau1apb	99	67.797	Astyanax_mexicanus
ENSHBUG00000018944	trnau1apb	99	84.795	ENSCSEG00000018215	trnau1apb	100	85.673	Cynoglossus_semilaevis
ENSHBUG00000018944	trnau1apb	95	80.303	ENSCVAG00000017866	trnau1apb	100	81.212	Cyprinodon_variegatus
ENSHBUG00000018944	trnau1apb	99	63.798	ENSDARG00000056475	trnau1apb	98	64.985	Danio_rerio
ENSHBUG00000018944	trnau1apb	99	62.757	ENSELUG00000016683	trnau1apb	99	65.982	Esox_lucius
ENSHBUG00000018944	trnau1apb	100	84.438	ENSFHEG00000001267	trnau1apb	100	84.726	Fundulus_heteroclitus
ENSHBUG00000018944	trnau1apb	100	70.448	ENSGMOG00000001160	trnau1apb	100	74.194	Gadus_morhua
ENSHBUG00000018944	trnau1apb	100	70.915	ENSGAFG00000006770	trnau1apb	100	75.660	Gambusia_affinis
ENSHBUG00000018944	trnau1apb	99	81.765	ENSGACG00000014944	trnau1apb	100	82.647	Gasterosteus_aculeatus
ENSHBUG00000018944	trnau1apb	71	40.816	ENSGAGG00000022384	-	78	42.130	Gopherus_agassizii
ENSHBUG00000018944	trnau1apb	78	82.018	ENSHCOG00000011350	trnau1apb	78	80.738	Hippocampus_comes
ENSHBUG00000018944	trnau1apb	99	63.529	ENSIPUG00000008843	tsp1l	99	66.172	Ictalurus_punctatus
ENSHBUG00000018944	trnau1apb	66	91.031	ENSKMAG00000010082	trnau1apb	100	86.337	Kryptolebias_marmoratus
ENSHBUG00000018944	trnau1apb	99	86.765	ENSLBEG00000020480	trnau1apb	100	87.647	Labrus_bergylta
ENSHBUG00000018944	trnau1apb	99	55.523	ENSLOCG00000013175	trnau1apb	99	55.263	Lepisosteus_oculatus
ENSHBUG00000018944	trnau1apb	99	92.035	ENSMAMG00000012192	trnau1apb	100	92.035	Mastacembelus_armatus
ENSHBUG00000018944	trnau1apb	100	100.000	ENSMZEG00005014852	trnau1apb	100	100.000	Maylandia_zebra
ENSHBUG00000018944	trnau1apb	71	39.918	ENSMGAG00000003234	-	99	46.269	Meleagris_gallopavo
ENSHBUG00000018944	trnau1apb	96	76.744	ENSMMOG00000021521	trnau1apb	100	76.744	Mola_mola
ENSHBUG00000018944	trnau1apb	100	74.267	ENSMALG00000003772	trnau1apb	100	75.000	Monopterus_albus
ENSHBUG00000018944	trnau1apb	97	89.759	ENSNBRG00000000751	trnau1apb	99	89.759	Neolamprologus_brichardi
ENSHBUG00000018944	trnau1apb	99	90.508	ENSONIG00000016639	trnau1apb	100	90.508	Oreochromis_niloticus
ENSHBUG00000018944	trnau1apb	66	89.333	ENSORLG00000013265	trnau1apb	100	84.058	Oryzias_latipes
ENSHBUG00000018944	trnau1apb	100	83.382	ENSORLG00020004464	trnau1apb	100	84.840	Oryzias_latipes_hni
ENSHBUG00000018944	trnau1apb	100	83.382	ENSORLG00015021098	trnau1apb	100	84.840	Oryzias_latipes_hsok
ENSHBUG00000018944	trnau1apb	100	67.733	ENSOMEG00000016531	trnau1apb	100	85.507	Oryzias_melastigma
ENSHBUG00000018944	trnau1apb	98	59.933	ENSPKIG00000007995	trnau1apb	99	63.758	Paramormyrops_kingsleyae
ENSHBUG00000018944	trnau1apb	71	43.033	ENSPSIG00000004189	-	78	44.444	Pelodiscus_sinensis
ENSHBUG00000018944	trnau1apb	99	72.277	ENSPMGG00000018509	trnau1apb	99	72.937	Periophthalmus_magnuspinnatus
ENSHBUG00000018944	trnau1apb	100	82.521	ENSPFOG00000003938	trnau1apb	100	84.150	Poecilia_formosa
ENSHBUG00000018944	trnau1apb	100	82.521	ENSPLAG00000015480	trnau1apb	100	84.150	Poecilia_latipinna
ENSHBUG00000018944	trnau1apb	100	82.521	ENSPMEG00000012743	trnau1apb	100	84.150	Poecilia_mexicana
ENSHBUG00000018944	trnau1apb	100	81.662	ENSPREG00000015035	trnau1apb	100	83.285	Poecilia_reticulata
ENSHBUG00000018944	trnau1apb	99	87.427	ENSPNYG00000012127	trnau1apb	100	87.427	Pundamilia_nyererei
ENSHBUG00000018944	trnau1apb	99	64.706	ENSPNAG00000019138	trnau1apb	98	67.062	Pygocentrus_nattereri
ENSHBUG00000018944	trnau1apb	99	60.000	ENSSFOG00015014158	trnau1apb	99	63.663	Scleropages_formosus
ENSHBUG00000018944	trnau1apb	99	86.136	ENSSMAG00000001745	trnau1apb	99	87.021	Scophthalmus_maximus
ENSHBUG00000018944	trnau1apb	99	90.855	ENSSDUG00000011109	trnau1apb	99	92.330	Seriola_dumerili
ENSHBUG00000018944	trnau1apb	99	90.560	ENSSLDG00000012947	trnau1apb	99	92.035	Seriola_lalandi_dorsalis
ENSHBUG00000018944	trnau1apb	70	36.905	ENSSPUG00000016701	-	90	33.333	Sphenodon_punctatus
ENSHBUG00000018944	trnau1apb	99	94.118	ENSSPAG00000006917	trnau1apb	100	94.118	Stegastes_partitus
ENSHBUG00000018944	trnau1apb	100	79.300	ENSTRUG00000008608	trnau1apb	100	79.023	Takifugu_rubripes
ENSHBUG00000018944	trnau1apb	99	74.086	ENSTNIG00000000916	trnau1apb	100	74.086	Tetraodon_nigroviridis
ENSHBUG00000018944	trnau1apb	94	73.780	ENSXCOG00000007974	trnau1apb	94	75.460	Xiphophorus_couchianus
ENSHBUG00000018944	trnau1apb	100	83.381	ENSXMAG00000029918	trnau1apb	100	85.014	Xiphophorus_maculatus