EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000020021 (Gene tree)
Gene ID: 102298604
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 39820 bases
Position: chrJH425730.1:154874-194693
Accession: 102298604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000017881	RNA_pol_Rpb1_5	PF04998.17	1.6e-91	1	1
ENSHBUP00000017881	RNA_pol_Rpb1_4	PF05000.17	2.4e-20	1	1
ENSHBUP00000017881	RNA_pol_Rpb1_2	PF00623.20	1.1e-67	1	1
ENSHBUP00000017881	RNA_pol_Rpb1_3	PF04983.18	3.6e-37	1	1
ENSHBUP00000017881	RNA_pol_Rpb1_1	PF04997.12	1.1e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000026765	-	4245	XM_014340730	ENSHBUP00000017881	1414 (aa)	XP_014196216	-

Gene Model

Click here to download ENSHBUG00000020021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000020021's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000020021	polr1a	82	35.238	ENSHBUG00000018937	polr2a	59	35.238

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000020021	polr1a	93	75.897	ENSG00000068654	POLR1A	92	64.617	Homo_sapiens
ENSHBUG00000020021	polr1a	75	81.466	ENSAPOG00000017945	polr1a	99	81.552	Acanthochromis_polyacanthus
ENSHBUG00000020021	polr1a	99	65.548	ENSAMEG00000005807	POLR1A	100	66.224	Ailuropoda_melanoleuca
ENSHBUG00000020021	polr1a	99	87.169	ENSACIG00000022147	polr1a	89	87.169	Amphilophus_citrinellus
ENSHBUG00000020021	polr1a	98	83.858	ENSAOCG00000017336	polr1a	90	81.311	Amphiprion_ocellaris
ENSHBUG00000020021	polr1a	98	84.252	ENSAPEG00000016105	polr1a	90	81.834	Amphiprion_percula
ENSHBUG00000020021	polr1a	99	82.374	ENSATEG00000016773	polr1a	90	82.578	Anabas_testudineus
ENSHBUG00000020021	polr1a	85	69.857	ENSAPLG00000013871	POLR1A	88	69.565	Anas_platyrhynchos
ENSHBUG00000020021	polr1a	99	63.730	ENSACAG00000012141	POLR1A	90	63.730	Anolis_carolinensis
ENSHBUG00000020021	polr1a	99	64.326	ENSANAG00000033927	POLR1A	90	64.326	Aotus_nancymaae
ENSHBUG00000020021	polr1a	99	99.267	ENSACLG00000020541	polr1a	89	98.936	Astatotilapia_calliptera
ENSHBUG00000020021	polr1a	98	65.148	ENSBTAG00000006481	POLR1A	90	64.865	Bos_taurus
ENSHBUG00000020021	polr1a	92	45.542	WBGene00012999	rpoa-1	77	59.783	Caenorhabditis_elegans
ENSHBUG00000020021	polr1a	99	63.818	ENSCJAG00000019547	POLR1A	90	64.137	Callithrix_jacchus
ENSHBUG00000020021	polr1a	98	65.769	ENSCAFG00000007613	POLR1A	90	64.865	Canis_familiaris
ENSHBUG00000020021	polr1a	95	72.222	ENSCAFG00020014752	POLR1A	95	66.348	Canis_lupus_dingo
ENSHBUG00000020021	polr1a	99	65.283	ENSCHIG00000018204	POLR1A	90	65.079	Capra_hircus
ENSHBUG00000020021	polr1a	99	64.217	ENSTSYG00000002761	POLR1A	90	64.217	Carlito_syrichta
ENSHBUG00000020021	polr1a	94	65.008	ENSCAPG00000010132	POLR1A	92	65.177	Cavia_aperea
ENSHBUG00000020021	polr1a	98	64.508	ENSCPOG00000012350	POLR1A	95	64.467	Cavia_porcellus
ENSHBUG00000020021	polr1a	99	64.217	ENSCCAG00000019839	POLR1A	90	64.019	Cebus_capucinus
ENSHBUG00000020021	polr1a	98	64.537	ENSCATG00000029786	POLR1A	90	64.337	Cercocebus_atys
ENSHBUG00000020021	polr1a	99	63.672	ENSCLAG00000005187	POLR1A	93	64.734	Chinchilla_lanigera
ENSHBUG00000020021	polr1a	99	64.457	ENSCSAG00000016251	POLR1A	90	64.257	Chlorocebus_sabaeus
ENSHBUG00000020021	polr1a	53	80.402	ENSCHOG00000003766	-	84	80.402	Choloepus_hoffmanni
ENSHBUG00000020021	polr1a	99	64.992	ENSCPBG00000001115	POLR1A	91	65.131	Chrysemys_picta_bellii
ENSHBUG00000020021	polr1a	93	55.917	ENSCSAVG00000007184	-	94	49.021	Ciona_savignyi
ENSHBUG00000020021	polr1a	99	61.372	ENSCANG00000031785	POLR1A	90	60.814	Colobus_angolensis_palliatus
ENSHBUG00000020021	polr1a	92	68.511	ENSCGRG00001006651	Polr1a	90	65.789	Cricetulus_griseus_chok1gshd
ENSHBUG00000020021	polr1a	53	68.511	ENSCGRG00000010834	Polr1a	84	65.905	Cricetulus_griseus_crigri
ENSHBUG00000020021	polr1a	100	75.914	ENSCSEG00000020190	polr1a	91	75.914	Cynoglossus_semilaevis
ENSHBUG00000020021	polr1a	98	81.266	ENSCVAG00000020941	polr1a	90	80.795	Cyprinodon_variegatus
ENSHBUG00000020021	polr1a	97	74.167	ENSDARG00000098375	polr1a	90	70.816	Danio_rerio
ENSHBUG00000020021	polr1a	99	63.275	ENSDNOG00000010829	POLR1A	90	63.225	Dasypus_novemcinctus
ENSHBUG00000020021	polr1a	97	66.527	ENSDORG00000008298	Polr1a	90	64.235	Dipodomys_ordii
ENSHBUG00000020021	polr1a	87	50.267	FBgn0019938	RpI1	80	50.267	Drosophila_melanogaster
ENSHBUG00000020021	polr1a	61	87.500	ENSETEG00000000412	-	55	87.500	Echinops_telfairi
ENSHBUG00000020021	polr1a	83	51.142	ENSEBUG00000005667	-	82	62.016	Eptatretus_burgeri
ENSHBUG00000020021	polr1a	99	65.308	ENSEASG00005001625	POLR1A	90	64.944	Equus_asinus_asinus
ENSHBUG00000020021	polr1a	99	65.308	ENSECAG00000036306	-	90	66.632	Equus_caballus
ENSHBUG00000020021	polr1a	89	83.077	ENSECAG00000030510	-	84	83.077	Equus_caballus
ENSHBUG00000020021	polr1a	99	65.308	ENSECAG00000010092	POLR1A	90	66.632	Equus_caballus
ENSHBUG00000020021	polr1a	77	87.097	ENSEEUG00000000676	POLR1A	67	87.097	Erinaceus_europaeus
ENSHBUG00000020021	polr1a	98	73.092	ENSELUG00000012769	polr1a	89	73.092	Esox_lucius
ENSHBUG00000020021	polr1a	100	64.785	ENSFCAG00000008966	POLR1A	90	64.785	Felis_catus
ENSHBUG00000020021	polr1a	97	65.267	ENSFALG00000010082	POLR1A	91	63.952	Ficedula_albicollis
ENSHBUG00000020021	polr1a	98	64.405	ENSFDAG00000013726	POLR1A	90	64.206	Fukomys_damarensis
ENSHBUG00000020021	polr1a	99	79.310	ENSFHEG00000005996	polr1a	91	79.310	Fundulus_heteroclitus
ENSHBUG00000020021	polr1a	99	71.540	ENSGMOG00000002230	polr1a	89	71.540	Gadus_morhua
ENSHBUG00000020021	polr1a	86	64.125	ENSGALG00000038160	-	89	63.752	Gallus_gallus
ENSHBUG00000020021	polr1a	99	79.534	ENSGAFG00000015266	polr1a	90	79.239	Gambusia_affinis
ENSHBUG00000020021	polr1a	99	80.404	ENSGACG00000018791	polr1a	88	80.404	Gasterosteus_aculeatus
ENSHBUG00000020021	polr1a	85	71.604	ENSGAGG00000004984	-	84	76.197	Gopherus_agassizii
ENSHBUG00000020021	polr1a	99	64.457	ENSGGOG00000001788	POLR1A	90	64.257	Gorilla_gorilla
ENSHBUG00000020021	polr1a	98	64.673	ENSHGLG00000006334	POLR1A	90	64.473	Heterocephalus_glaber_female
ENSHBUG00000020021	polr1a	98	64.615	ENSHGLG00100006614	POLR1A	90	64.066	Heterocephalus_glaber_male
ENSHBUG00000020021	polr1a	97	78.656	ENSHCOG00000003345	polr1a	89	78.159	Hippocampus_comes
ENSHBUG00000020021	polr1a	99	68.910	ENSIPUG00000013174	polr1a	90	69.151	Ictalurus_punctatus
ENSHBUG00000020021	polr1a	96	68.122	ENSSTOG00000012580	POLR1A	90	64.314	Ictidomys_tridecemlineatus
ENSHBUG00000020021	polr1a	98	70.101	ENSJJAG00000013113	Polr1a	90	64.785	Jaculus_jaculus
ENSHBUG00000020021	polr1a	100	80.351	ENSKMAG00000007399	polr1a	90	79.577	Kryptolebias_marmoratus
ENSHBUG00000020021	polr1a	97	87.200	ENSLBEG00000015401	polr1a	90	82.292	Labrus_bergylta
ENSHBUG00000020021	polr1a	59	67.283	ENSLACG00000003218	polr1a	100	67.283	Latimeria_chalumnae
ENSHBUG00000020021	polr1a	99	76.883	ENSLOCG00000010881	polr1a	92	69.992	Lepisosteus_oculatus
ENSHBUG00000020021	polr1a	100	64.105	ENSLAFG00000014948	POLR1A	90	63.665	Loxodonta_africana
ENSHBUG00000020021	polr1a	99	64.457	ENSMFAG00000046097	POLR1A	90	64.257	Macaca_fascicularis
ENSHBUG00000020021	polr1a	99	64.537	ENSMMUG00000015815	POLR1A	90	64.337	Macaca_mulatta
ENSHBUG00000020021	polr1a	99	64.537	ENSMNEG00000043313	POLR1A	90	64.337	Macaca_nemestrina
ENSHBUG00000020021	polr1a	99	64.457	ENSMLEG00000042428	POLR1A	90	64.257	Mandrillus_leucophaeus
ENSHBUG00000020021	polr1a	98	81.509	ENSMAMG00000016565	polr1a	90	81.206	Mastacembelus_armatus
ENSHBUG00000020021	polr1a	100	98.936	ENSMZEG00005004915	polr1a	90	98.936	Maylandia_zebra
ENSHBUG00000020021	polr1a	98	63.831	ENSMGAG00000013111	POLR1A	91	63.831	Meleagris_gallopavo
ENSHBUG00000020021	polr1a	82	70.265	ENSMAUG00000008497	Polr1a	81	70.071	Mesocricetus_auratus
ENSHBUG00000020021	polr1a	99	64.593	ENSMICG00000000757	POLR1A	90	64.734	Microcebus_murinus
ENSHBUG00000020021	polr1a	97	67.364	ENSMOCG00000000122	Polr1a	92	63.708	Microtus_ochrogaster
ENSHBUG00000020021	polr1a	99	79.934	ENSMMOG00000010216	polr1a	90	79.934	Mola_mola
ENSHBUG00000020021	polr1a	99	63.449	ENSMODG00000009335	POLR1A	88	63.449	Monodelphis_domestica
ENSHBUG00000020021	polr1a	97	84.314	ENSMALG00000013363	polr1a	89	82.679	Monopterus_albus
ENSHBUG00000020021	polr1a	98	70.265	MGP_CAROLIEiJ_G0028494	Polr1a	86	69.970	Mus_caroli
ENSHBUG00000020021	polr1a	97	70.265	ENSMUSG00000049553	Polr1a	86	69.970	Mus_musculus
ENSHBUG00000020021	polr1a	98	70.468	MGP_PahariEiJ_G0022230	Polr1a	90	64.060	Mus_pahari
ENSHBUG00000020021	polr1a	98	70.071	MGP_SPRETEiJ_G0029499	Polr1a	86	70.273	Mus_spretus
ENSHBUG00000020021	polr1a	99	65.183	ENSMPUG00000009135	POLR1A	90	65.183	Mustela_putorius_furo
ENSHBUG00000020021	polr1a	99	64.399	ENSMLUG00000015723	POLR1A	90	64.399	Myotis_lucifugus
ENSHBUG00000020021	polr1a	96	71.429	ENSNGAG00000017907	Polr1a	90	64.529	Nannospalax_galili
ENSHBUG00000020021	polr1a	100	98.227	ENSNBRG00000000519	polr1a	90	98.227	Neolamprologus_brichardi
ENSHBUG00000020021	polr1a	99	63.818	ENSNLEG00000002264	POLR1A	89	63.818	Nomascus_leucogenys
ENSHBUG00000020021	polr1a	76	81.102	ENSMEUG00000011665	-	69	81.102	Notamacropus_eugenii
ENSHBUG00000020021	polr1a	97	59.917	ENSOPRG00000008269	POLR1A	93	59.242	Ochotona_princeps
ENSHBUG00000020021	polr1a	99	64.753	ENSODEG00000003542	POLR1A	90	64.552	Octodon_degus
ENSHBUG00000020021	polr1a	100	96.127	ENSONIG00000015895	polr1a	90	96.127	Oreochromis_niloticus
ENSHBUG00000020021	polr1a	98	65.096	ENSOCUG00000010138	POLR1A	91	64.893	Oryctolagus_cuniculus
ENSHBUG00000020021	polr1a	100	78.606	ENSORLG00000008753	polr1a	90	78.525	Oryzias_latipes
ENSHBUG00000020021	polr1a	100	79.322	ENSORLG00020020726	polr1a	91	79.322	Oryzias_latipes_hni
ENSHBUG00000020021	polr1a	100	77.078	ENSORLG00015016071	polr1a	88	88.298	Oryzias_latipes_hsok
ENSHBUG00000020021	polr1a	98	64.274	ENSOGAG00000004031	POLR1A	90	64.076	Otolemur_garnettii
ENSHBUG00000020021	polr1a	99	64.964	ENSOARG00000020601	POLR1A	90	64.762	Ovis_aries
ENSHBUG00000020021	polr1a	99	64.377	ENSPPAG00000042450	POLR1A	90	64.178	Pan_paniscus
ENSHBUG00000020021	polr1a	100	64.785	ENSPPRG00000006702	POLR1A	90	64.785	Panthera_pardus
ENSHBUG00000020021	polr1a	99	64.360	ENSPTIG00000018783	POLR1A	90	64.161	Panthera_tigris_altaica
ENSHBUG00000020021	polr1a	99	64.217	ENSPTRG00000012147	POLR1A	90	64.019	Pan_troglodytes
ENSHBUG00000020021	polr1a	98	64.297	ENSPANG00000025908	POLR1A	90	64.098	Papio_anubis
ENSHBUG00000020021	polr1a	100	72.156	ENSPKIG00000005468	polr1a	91	72.044	Paramormyrops_kingsleyae
ENSHBUG00000020021	polr1a	59	67.590	ENSPSIG00000009321	-	85	67.590	Pelodiscus_sinensis
ENSHBUG00000020021	polr1a	61	80.420	ENSPMGG00000009718	polr1a	95	80.420	Periophthalmus_magnuspinnatus
ENSHBUG00000020021	polr1a	96	68.511	ENSPEMG00000022224	Polr1a	90	63.615	Peromyscus_maniculatus_bairdii
ENSHBUG00000020021	polr1a	91	63.808	ENSPCIG00000004222	POLR1A	89	63.808	Phascolarctos_cinereus
ENSHBUG00000020021	polr1a	96	85.022	ENSPFOG00000005025	polr1a	90	77.930	Poecilia_formosa
ENSHBUG00000020021	polr1a	98	79.310	ENSPLAG00000021389	polr1a	90	77.769	Poecilia_latipinna
ENSHBUG00000020021	polr1a	96	85.463	ENSPMEG00000006463	polr1a	90	77.704	Poecilia_mexicana
ENSHBUG00000020021	polr1a	99	78.211	ENSPREG00000002389	polr1a	90	77.930	Poecilia_reticulata
ENSHBUG00000020021	polr1a	99	64.137	ENSPPYG00000012217	POLR1A	90	64.137	Pongo_abelii
ENSHBUG00000020021	polr1a	92	64.964	ENSPCAG00000011582	POLR1A	81	64.706	Procavia_capensis
ENSHBUG00000020021	polr1a	98	64.416	ENSPCOG00000026987	POLR1A	90	64.593	Propithecus_coquereli
ENSHBUG00000020021	polr1a	91	68.326	ENSPVAG00000012674	POLR1A	81	68.326	Pteropus_vampyrus
ENSHBUG00000020021	polr1a	100	98.582	ENSPNYG00000000026	polr1a	90	98.582	Pundamilia_nyererei
ENSHBUG00000020021	polr1a	96	75.893	ENSPNAG00000019223	polr1a	89	72.913	Pygocentrus_nattereri
ENSHBUG00000020021	polr1a	96	68.085	ENSRNOG00000009545	Polr1a	90	63.615	Rattus_norvegicus
ENSHBUG00000020021	polr1a	99	64.377	ENSRBIG00000028335	POLR1A	90	64.178	Rhinopithecus_bieti
ENSHBUG00000020021	polr1a	99	64.377	ENSRROG00000031473	POLR1A	90	64.178	Rhinopithecus_roxellana
ENSHBUG00000020021	polr1a	88	45.714	YOR341W	RPA190	77	45.714	Saccharomyces_cerevisiae
ENSHBUG00000020021	polr1a	99	64.457	ENSSBOG00000030262	POLR1A	90	64.457	Saimiri_boliviensis_boliviensis
ENSHBUG00000020021	polr1a	99	62.637	ENSSHAG00000014739	POLR1A	86	62.135	Sarcophilus_harrisii
ENSHBUG00000020021	polr1a	96	75.771	ENSSFOG00015019716	polr1a	91	70.603	Scleropages_formosus
ENSHBUG00000020021	polr1a	99	83.786	ENSSMAG00000014342	polr1a	89	83.786	Scophthalmus_maximus
ENSHBUG00000020021	polr1a	98	87.795	ENSSDUG00000014631	polr1a	90	85.664	Seriola_dumerili
ENSHBUG00000020021	polr1a	98	87.795	ENSSLDG00000024095	polr1a	90	87.500	Seriola_lalandi_dorsalis
ENSHBUG00000020021	polr1a	65	95.122	ENSSARG00000003136	-	60	95.122	Sorex_araneus
ENSHBUG00000020021	polr1a	94	72.500	ENSSPUG00000004215	POLR1A	90	72.500	Sphenodon_punctatus
ENSHBUG00000020021	polr1a	77	81.866	ENSSPAG00000016341	polr1a	99	83.801	Stegastes_partitus
ENSHBUG00000020021	polr1a	80	64.725	ENSSSCG00000008226	POLR1A	87	64.725	Sus_scrofa
ENSHBUG00000020021	polr1a	98	63.873	ENSTGUG00000010704	POLR1A	90	63.792	Taeniopygia_guttata
ENSHBUG00000020021	polr1a	98	76.537	ENSTRUG00000002210	polr1a	97	75.751	Takifugu_rubripes
ENSHBUG00000020021	polr1a	98	72.029	ENSTNIG00000010116	polr1a	88	72.029	Tetraodon_nigroviridis
ENSHBUG00000020021	polr1a	66	82.743	ENSTBEG00000008646	POLR1A	59	82.743	Tupaia_belangeri
ENSHBUG00000020021	polr1a	96	69.198	ENSTTRG00000008597	POLR1A	90	61.433	Tursiops_truncatus
ENSHBUG00000020021	polr1a	66	70.572	ENSUAMG00000012158	-	81	70.572	Ursus_americanus
ENSHBUG00000020021	polr1a	99	69.060	ENSUMAG00000006700	POLR1A	91	73.466	Ursus_maritimus
ENSHBUG00000020021	polr1a	98	65.267	ENSVVUG00000001245	POLR1A	90	64.706	Vulpes_vulpes
ENSHBUG00000020021	polr1a	99	62.083	ENSXETG00000001952	polr1a	90	62.470	Xenopus_tropicalis
ENSHBUG00000020021	polr1a	99	79.458	ENSXMAG00000004032	polr1a	90	79.085	Xiphophorus_maculatus