EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000020056 (Gene tree)
Gene ID: 102298929
Gene Symbol: ptcd3
Alias: fa08d08|wu:fa08d08|zgc:123014
Full Name: pentatricopeptide repeat domain 3
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 9860 bases
Position: chrJH425730.1:145220-155079
Accession: 102298929
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000033259	PPR	PF01535.20	8.6e-06	1	1
ENSHBUP00000017973	PPR	PF01535.20	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000026892	-	4865	-	ENSHBUP00000033259	626 (aa)	-	-
ENSHBUT00000034892	-	4592	XM_005944290	ENSHBUP00000017973	665 (aa)	XP_005944352	UPI0003BD2A95

Gene Model

Click here to download ENSHBUG00000020056's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000020056's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000020056	ptcd3	94	84.080	ENSACIG00000022263	ptcd3	100	84.013	Amphilophus_citrinellus
ENSHBUG00000020056	ptcd3	100	79.129	ENSAOCG00000017186	ptcd3	98	79.129	Amphiprion_ocellaris
ENSHBUG00000020056	ptcd3	100	79.279	ENSAPEG00000016069	ptcd3	98	79.279	Amphiprion_percula
ENSHBUG00000020056	ptcd3	93	47.723	ENSAPLG00000005086	PTCD3	97	47.723	Anas_platyrhynchos
ENSHBUG00000020056	ptcd3	100	99.699	ENSACLG00000020653	ptcd3	100	99.699	Astatotilapia_calliptera
ENSHBUG00000020056	ptcd3	100	58.982	ENSAMXG00000011570	ptcd3	100	58.982	Astyanax_mexicanus
ENSHBUG00000020056	ptcd3	98	78.931	ENSCVAG00000020820	ptcd3	99	80.431	Cyprinodon_variegatus
ENSHBUG00000020056	ptcd3	90	73.944	ENSGAFG00000015291	ptcd3	94	74.120	Gambusia_affinis
ENSHBUG00000020056	ptcd3	99	75.940	ENSLBEG00000015349	ptcd3	99	75.940	Labrus_bergylta
ENSHBUG00000020056	ptcd3	100	99.699	ENSMZEG00005004980	ptcd3	100	99.699	Maylandia_zebra
ENSHBUG00000020056	ptcd3	95	45.108	ENSMGAG00000013124	PTCD3	99	45.760	Meleagris_gallopavo
ENSHBUG00000020056	ptcd3	100	76.347	ENSMALG00000013282	ptcd3	100	76.347	Monopterus_albus
ENSHBUG00000020056	ptcd3	94	89.153	ENSNBRG00000000447	ptcd3	100	89.112	Neolamprologus_brichardi
ENSHBUG00000020056	ptcd3	100	97.444	ENSONIG00000015886	ptcd3	100	97.444	Oreochromis_niloticus
ENSHBUG00000020056	ptcd3	100	78.496	ENSORLG00000008776	ptcd3	100	79.448	Oryzias_latipes
ENSHBUG00000020056	ptcd3	99	78.313	ENSORLG00020020676	ptcd3	99	79.098	Oryzias_latipes_hni
ENSHBUG00000020056	ptcd3	92	63.866	ENSORLG00015015978	ptcd3	99	64.874	Oryzias_latipes_hsok
ENSHBUG00000020056	ptcd3	98	74.693	ENSPFOG00000004442	ptcd3	100	74.693	Poecilia_formosa
ENSHBUG00000020056	ptcd3	90	75.360	ENSPLAG00000021401	ptcd3	100	75.360	Poecilia_latipinna
ENSHBUG00000020056	ptcd3	93	73.038	ENSPMEG00000007153	ptcd3	100	73.038	Poecilia_mexicana
ENSHBUG00000020056	ptcd3	98	56.210	ENSSFOG00015019643	ptcd3	99	56.210	Scleropages_formosus
ENSHBUG00000020056	ptcd3	83	52.381	ENSTGUG00000010760	PTCD3	100	52.319	Taeniopygia_guttata
ENSHBUG00000020056	ptcd3	100	65.120	ENSTRUG00000003939	ptcd3	100	65.120	Takifugu_rubripes