EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSHBUG00000020315 (Gene tree)
Gene ID
102301284
Gene Symbol
csde1
Alias
fa92c07|si:ch211-261n11.2|wu:fa92c07|wu:fa97c10|wu:fb53f07|wu:fb78d03
Full Name
cold shock domain containing E1
Gene Type
protein_coding
Species
Haplochromis_burtoni
Status
putative
Strand
Plus strand
Length
13683 bases
Position
chrJH425639.1:132652-146334
Accession
102301284
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHBUP00000033290CSDPF00313.223.6e-8315
ENSHBUP00000033290CSDPF00313.223.6e-8325
ENSHBUP00000033290CSDPF00313.223.6e-8335
ENSHBUP00000033290CSDPF00313.223.6e-8345
ENSHBUP00000033290CSDPF00313.223.6e-8355
ENSHBUP00000018073CSDPF00313.221e-8215
ENSHBUP00000018073CSDPF00313.221e-8225
ENSHBUP00000018073CSDPF00313.221e-8235
ENSHBUP00000018073CSDPF00313.221e-8245
ENSHBUP00000018073CSDPF00313.221e-8255
ENSHBUP00000033302CSDPF00313.221.2e-8215
ENSHBUP00000033302CSDPF00313.221.2e-8225
ENSHBUP00000033302CSDPF00313.221.2e-8235
ENSHBUP00000033302CSDPF00313.221.2e-8245
ENSHBUP00000033302CSDPF00313.221.2e-8255
ENSHBUP00000018081CSDPF00313.222.6e-8215
ENSHBUP00000018081CSDPF00313.222.6e-8225
ENSHBUP00000018081CSDPF00313.222.6e-8235
ENSHBUP00000018081CSDPF00313.222.6e-8245
ENSHBUP00000018081CSDPF00313.222.6e-8255
ENSHBUP00000018049CSDPF00313.227e-8215
ENSHBUP00000018049CSDPF00313.227e-8225
ENSHBUP00000018049CSDPF00313.227e-8235
ENSHBUP00000018049CSDPF00313.227e-8245
ENSHBUP00000018049CSDPF00313.227e-8255
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHBUT00000027024-5952XM_005941630ENSHBUP00000018073844 (aa)XP_005941692-
ENSHBUT00000026996-5877XM_005941629ENSHBUP00000033302855 (aa)XP_005941691-
ENSHBUT00000026961-2310-ENSHBUP00000033290769 (aa)--
ENSHBUT00000027033-6186XM_014339835ENSHBUP00000018081922 (aa)XP_014195321UPI0003BDA230
ENSHBUT00000027007-5763XM_005941631ENSHBUP00000018049827 (aa)XP_005941693-
Gene Model
Click here to download ENSHBUG00000020315's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000020315's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHBUG00000020315csde110077.373ENSG00000009307CSDE110085.294Homo_sapiens
ENSHBUG00000020315csde110093.628ENSAPOG00000015538csde110093.628Acanthochromis_polyacanthus
ENSHBUG00000020315csde110076.593ENSAMEG00000017129CSDE19476.593Ailuropoda_melanoleuca
ENSHBUG00000020315csde19095.676ENSACIG00000015175csde110095.676Amphilophus_citrinellus
ENSHBUG00000020315csde110093.368ENSAOCG00000011510csde110093.368Amphiprion_ocellaris
ENSHBUG00000020315csde110093.498ENSAPEG00000007194csde110093.880Amphiprion_percula
ENSHBUG00000020315csde110092.718ENSATEG00000003864csde110092.718Anabas_testudineus
ENSHBUG00000020315csde110079.454ENSAPLG00000008797CSDE110079.064Anas_platyrhynchos
ENSHBUG00000020315csde110076.500ENSACAG00000003120CSDE110078.358Anolis_carolinensis
ENSHBUG00000020315csde110077.243ENSANAG00000024665CSDE19974.911Aotus_nancymaae
ENSHBUG00000020315csde19361.433ENSANAG00000028396-9163.605Aotus_nancymaae
ENSHBUG00000020315csde1100100.000ENSACLG00000013296csde1100100.000Astatotilapia_calliptera
ENSHBUG00000020315csde110085.084ENSAMXG00000007436csde110084.565Astyanax_mexicanus
ENSHBUG00000020315csde110077.113ENSBTAG00000000678CSDE110077.113Bos_taurus
ENSHBUG00000020315csde110077.243ENSCJAG00000012565CSDE19975.030Callithrix_jacchus
ENSHBUG00000020315csde19877.822ENSCAFG00000009618CSDE19477.822Canis_familiaris
ENSHBUG00000020315csde110077.633ENSCAFG00020000481CSDE110077.633Canis_lupus_dingo
ENSHBUG00000020315csde110077.113ENSCHIG00000017250CSDE110077.113Capra_hircus
ENSHBUG00000020315csde110077.373ENSTSYG00000003747CSDE110077.373Carlito_syrichta
ENSHBUG00000020315csde19576.687ENSCAPG00000015128CSDE110076.687Cavia_aperea
ENSHBUG00000020315csde110071.808ENSCPOG00000040388CSDE110072.693Cavia_porcellus
ENSHBUG00000020315csde110077.243ENSCCAG00000036794CSDE110076.244Cebus_capucinus
ENSHBUG00000020315csde19754.130ENSCCAG00000030878-9154.889Cebus_capucinus
ENSHBUG00000020315csde19556.872ENSCCAG00000033677-9955.924Cebus_capucinus
ENSHBUG00000020315csde110077.373ENSCATG00000036962CSDE19777.373Cercocebus_atys
ENSHBUG00000020315csde110077.503ENSCLAG00000006618CSDE110077.503Chinchilla_lanigera
ENSHBUG00000020315csde110074.375ENSCSAG00000001658CSDE19975.149Chlorocebus_sabaeus
ENSHBUG00000020315csde110082.524ENSCHOG00000000918CSDE18981.040Choloepus_hoffmanni
ENSHBUG00000020315csde110079.584ENSCPBG00000016547CSDE110079.194Chrysemys_picta_bellii
ENSHBUG00000020315csde19842.280ENSCING00000014465-9841.951Ciona_intestinalis
ENSHBUG00000020315csde19741.408ENSCSAVG00000008100-10041.466Ciona_savignyi
ENSHBUG00000020315csde19079.924ENSCANG00000031069-9479.259Colobus_angolensis_palliatus
ENSHBUG00000020315csde110077.373ENSCANG00000035096CSDE19777.373Colobus_angolensis_palliatus
ENSHBUG00000020315csde110076.723ENSCGRG00001016833-10076.723Cricetulus_griseus_chok1gshd
ENSHBUG00000020315csde110063.069ENSCGRG00001014011-10063.069Cricetulus_griseus_chok1gshd
ENSHBUG00000020315csde19673.111ENSCGRG00000002225-10073.111Cricetulus_griseus_crigri
ENSHBUG00000020315csde110073.913ENSCGRG00000005831-10073.913Cricetulus_griseus_crigri
ENSHBUG00000020315csde110091.157ENSCSEG00000002620csde110091.157Cynoglossus_semilaevis
ENSHBUG00000020315csde110091.943ENSCVAG00000001344csde110091.943Cyprinodon_variegatus
ENSHBUG00000020315csde110084.541ENSDARG00000074758csde110089.568Danio_rerio
ENSHBUG00000020315csde16250.951ENSDNOG00000034464-9964.762Dasypus_novemcinctus
ENSHBUG00000020315csde110077.792ENSDNOG00000010287-9377.792Dasypus_novemcinctus
ENSHBUG00000020315csde19976.119ENSDORG00000011609Csde110076.119Dipodomys_ordii
ENSHBUG00000020315csde19747.481FBgn0263352Unr8647.431Drosophila_melanogaster
ENSHBUG00000020315csde18881.148ENSETEG00000002491-8671.470Echinops_telfairi
ENSHBUG00000020315csde19068.671ENSETEG00000006280-9968.671Echinops_telfairi
ENSHBUG00000020315csde17953.465ENSETEG00000007109-9953.465Echinops_telfairi
ENSHBUG00000020315csde19960.156ENSETEG00000013678-9960.156Echinops_telfairi
ENSHBUG00000020315csde19953.202ENSEBUG00000008647csde19952.745Eptatretus_burgeri
ENSHBUG00000020315csde110077.763ENSEASG00005006284CSDE110076.741Equus_asinus_asinus
ENSHBUG00000020315csde110077.763ENSECAG00000020885CSDE110076.741Equus_caballus
ENSHBUG00000020315csde19381.562ENSEEUG00000006286CSDE16881.562Erinaceus_europaeus
ENSHBUG00000020315csde110085.885ENSELUG00000015507csde110084.943Esox_lucius
ENSHBUG00000020315csde110077.633ENSFCAG00000029266CSDE110077.633Felis_catus
ENSHBUG00000020315csde110075.875ENSFALG00000003407CSDE110077.861Ficedula_albicollis
ENSHBUG00000020315csde19975.970ENSFDAG00000007882CSDE110075.970Fukomys_damarensis
ENSHBUG00000020315csde110091.015ENSFHEG00000010799csde110091.022Fundulus_heteroclitus
ENSHBUG00000020315csde19985.369ENSGMOG00000012731csde110087.656Gadus_morhua
ENSHBUG00000020315csde19876.306ENSGALG00000002139CSDE19878.327Gallus_gallus
ENSHBUG00000020315csde19492.214ENSGAFG00000005241csde19592.214Gambusia_affinis
ENSHBUG00000020315csde19988.862ENSGACG00000004544csde110091.511Gasterosteus_aculeatus
ENSHBUG00000020315csde110079.454ENSGAGG00000017685CSDE110078.234Gopherus_agassizii
ENSHBUG00000020315csde110077.373ENSGGOG00000002164CSDE110077.373Gorilla_gorilla
ENSHBUG00000020315csde110069.571ENSHGLG00000003829-10069.571Heterocephalus_glaber_female
ENSHBUG00000020315csde110063.476ENSHGLG00000019549-10064.339Heterocephalus_glaber_female
ENSHBUG00000020315csde19967.463ENSHGLG00000008555-10067.463Heterocephalus_glaber_female
ENSHBUG00000020315csde19966.841ENSHGLG00000007471-9866.841Heterocephalus_glaber_female
ENSHBUG00000020315csde19960.145ENSHGLG00000000650-9961.893Heterocephalus_glaber_female
ENSHBUG00000020315csde110070.351ENSHGLG00000009620-10070.741Heterocephalus_glaber_female
ENSHBUG00000020315csde19666.000ENSHGLG00000010039-10066.000Heterocephalus_glaber_female
ENSHBUG00000020315csde110063.636ENSHGLG00100001846-10063.377Heterocephalus_glaber_male
ENSHBUG00000020315csde19365.229ENSHGLG00100004195-10064.951Heterocephalus_glaber_male
ENSHBUG00000020315csde19660.444ENSHGLG00100004833-10060.444Heterocephalus_glaber_male
ENSHBUG00000020315csde110065.150ENSHGLG00100012072-10065.150Heterocephalus_glaber_male
ENSHBUG00000020315csde19963.253ENSHGLG00100002245-9965.093Heterocephalus_glaber_male
ENSHBUG00000020315csde110077.113ENSHGLG00100019438-10077.113Heterocephalus_glaber_male
ENSHBUG00000020315csde19965.531ENSHGLG00100007287-9865.531Heterocephalus_glaber_male
ENSHBUG00000020315csde19665.778ENSHGLG00100006910-10065.778Heterocephalus_glaber_male
ENSHBUG00000020315csde110091.232ENSHCOG00000004158csde110091.232Hippocampus_comes
ENSHBUG00000020315csde110084.565ENSIPUG00000000355csde110083.917Ictalurus_punctatus
ENSHBUG00000020315csde110063.520ENSSTOG00000030994-10063.393Ictidomys_tridecemlineatus
ENSHBUG00000020315csde19065.503ENSSTOG00000032722-9865.503Ictidomys_tridecemlineatus
ENSHBUG00000020315csde19976.119ENSJJAG00000019571Csde110076.119Jaculus_jaculus
ENSHBUG00000020315csde110091.502ENSKMAG00000005685csde110091.811Kryptolebias_marmoratus
ENSHBUG00000020315csde110092.588ENSLBEG00000014770csde110092.588Labrus_bergylta
ENSHBUG00000020315csde110073.580ENSLACG00000018452CSDE19973.372Latimeria_chalumnae
ENSHBUG00000020315csde110082.456ENSLOCG00000010413csde110082.497Lepisosteus_oculatus
ENSHBUG00000020315csde110077.243ENSLAFG00000007150CSDE19677.243Loxodonta_africana
ENSHBUG00000020315csde110077.373ENSMFAG00000003674CSDE110077.373Macaca_fascicularis
ENSHBUG00000020315csde110077.373ENSMMUG00000001974CSDE110077.373Macaca_mulatta
ENSHBUG00000020315csde110077.373ENSMNEG00000045247CSDE19777.373Macaca_nemestrina
ENSHBUG00000020315csde110077.113ENSMLEG00000038673CSDE19974.911Mandrillus_leucophaeus
ENSHBUG00000020315csde110093.628ENSMAMG00000008821csde110093.628Mastacembelus_armatus
ENSHBUG00000020315csde1100100.000ENSMZEG00005021675csde1100100.000Maylandia_zebra
ENSHBUG00000020315csde110079.351ENSMGAG00000016381CSDE110078.961Meleagris_gallopavo
ENSHBUG00000020315csde19975.821ENSMAUG00000014031Csde110075.821Mesocricetus_auratus
ENSHBUG00000020315csde110077.503ENSMICG00000002050CSDE19677.445Microcebus_murinus
ENSHBUG00000020315csde110076.723ENSMOCG00000018960Csde110076.723Microtus_ochrogaster
ENSHBUG00000020315csde110093.238ENSMMOG00000015075csde110093.238Mola_mola
ENSHBUG00000020315csde110077.821ENSMODG00000004685CSDE110077.488Monodelphis_domestica
ENSHBUG00000020315csde110093.238ENSMALG00000007132csde110093.238Monopterus_albus
ENSHBUG00000020315csde110076.853MGP_CAROLIEiJ_G0025444Csde110084.106Mus_caroli
ENSHBUG00000020315csde110076.853ENSMUSG00000068823Csde110084.106Mus_musculus
ENSHBUG00000020315csde110076.853MGP_PahariEiJ_G0026888Csde110084.106Mus_pahari
ENSHBUG00000020315csde110076.853MGP_SPRETEiJ_G0026394Csde110084.106Mus_spretus
ENSHBUG00000020315csde19874.745ENSMPUG00000005753CSDE19976.777Mustela_putorius_furo
ENSHBUG00000020315csde110077.113ENSMLUG00000005681CSDE19477.113Myotis_lucifugus
ENSHBUG00000020315csde19652.000ENSNGAG00000012599-10052.000Nannospalax_galili
ENSHBUG00000020315csde19975.672ENSNGAG00000021929Csde110075.672Nannospalax_galili
ENSHBUG00000020315csde1100100.000ENSNBRG00000020808csde1100100.000Neolamprologus_brichardi
ENSHBUG00000020315csde110077.373ENSNLEG00000004842CSDE19777.373Nomascus_leucogenys
ENSHBUG00000020315csde19884.466ENSMEUG00000002677CSDE19584.466Notamacropus_eugenii
ENSHBUG00000020315csde19882.524ENSOPRG00000005002CSDE17682.524Ochotona_princeps
ENSHBUG00000020315csde19975.970ENSODEG00000007383-10075.970Octodon_degus
ENSHBUG00000020315csde19652.097ENSODEG00000005979-9852.097Octodon_degus
ENSHBUG00000020315csde110098.549ENSONIG00000009309csde110099.755Oreochromis_niloticus
ENSHBUG00000020315csde110081.356ENSOANG00000003346-8281.356Ornithorhynchus_anatinus
ENSHBUG00000020315csde110076.983ENSOCUG00000016438CSDE19974.528Oryctolagus_cuniculus
ENSHBUG00000020315csde110091.678ENSORLG00000000707csde110091.922Oryzias_latipes
ENSHBUG00000020315csde110091.351ENSORLG00020005148csde110091.922Oryzias_latipes_hni
ENSHBUG00000020315csde110091.547ENSORLG00015019415csde110091.799Oryzias_latipes_hsok
ENSHBUG00000020315csde110090.897ENSOMEG00000015656csde110091.922Oryzias_melastigma
ENSHBUG00000020315csde110077.503ENSOGAG00000012127CSDE19477.503Otolemur_garnettii
ENSHBUG00000020315csde110077.113ENSOARG00000020034CSDE19477.113Ovis_aries
ENSHBUG00000020315csde110077.373ENSPPAG00000025861CSDE110077.373Pan_paniscus
ENSHBUG00000020315csde110077.633ENSPPRG00000006747CSDE19875.357Panthera_pardus
ENSHBUG00000020315csde110077.633ENSPTIG00000015468CSDE110076.617Panthera_tigris_altaica
ENSHBUG00000020315csde110077.373ENSPTRG00000033721CSDE110076.368Pan_troglodytes
ENSHBUG00000020315csde110077.373ENSPANG00000018873CSDE110077.373Papio_anubis
ENSHBUG00000020315csde110084.785ENSPKIG00000009459csde110084.785Paramormyrops_kingsleyae
ENSHBUG00000020315csde19677.042ENSPSIG00000003823CSDE19483.217Pelodiscus_sinensis
ENSHBUG00000020315csde110090.260ENSPMGG00000000772csde110089.610Periophthalmus_magnuspinnatus
ENSHBUG00000020315csde19976.119ENSPEMG00000020357-10076.119Peromyscus_maniculatus_bairdii
ENSHBUG00000020315csde110075.625ENSPCIG00000022587CSDE110077.612Phascolarctos_cinereus
ENSHBUG00000020315csde19790.447ENSPFOG00000012664csde110090.824Poecilia_formosa
ENSHBUG00000020315csde19584.946ENSPLAG00000017680csde19384.946Poecilia_latipinna
ENSHBUG00000020315csde19585.253ENSPMEG00000005094csde19585.253Poecilia_mexicana
ENSHBUG00000020315csde110092.417ENSPREG00000011631csde110092.417Poecilia_reticulata
ENSHBUG00000020315csde110074.250ENSPPYG00000000996CSDE110076.244Pongo_abelii
ENSHBUG00000020315csde110083.495ENSPCAG00000014368CSDE19083.495Procavia_capensis
ENSHBUG00000020315csde19170.301ENSPCOG00000008223-9270.301Propithecus_coquereli
ENSHBUG00000020315csde110077.633ENSPCOG00000017893CSDE110077.633Propithecus_coquereli
ENSHBUG00000020315csde110072.172ENSPVAG00000008225CSDE19572.172Pteropus_vampyrus
ENSHBUG00000020315csde1100100.000ENSPNYG00000013745csde1100100.000Pundamilia_nyererei
ENSHBUG00000020315csde110086.252ENSPNAG00000001958csde110086.016Pygocentrus_nattereri
ENSHBUG00000020315csde110073.750ENSRNOG00000061058Csde110075.746Rattus_norvegicus
ENSHBUG00000020315csde110074.416ENSRBIG00000038088-10074.416Rhinopithecus_bieti
ENSHBUG00000020315csde110072.987ENSRBIG00000038966-9970.379Rhinopithecus_bieti
ENSHBUG00000020315csde110077.373ENSRROG00000043101CSDE19777.373Rhinopithecus_roxellana
ENSHBUG00000020315csde110077.243ENSSBOG00000035592CSDE19975.030Saimiri_boliviensis_boliviensis
ENSHBUG00000020315csde110078.674ENSSHAG00000009831CSDE110078.674Sarcophilus_harrisii
ENSHBUG00000020315csde110095.238ENSSFOG00015007498csde19395.238Scleropages_formosus
ENSHBUG00000020315csde110093.117ENSSMAG00000007203csde110092.848Scophthalmus_maximus
ENSHBUG00000020315csde110094.408ENSSDUG00000015380csde110094.408Seriola_dumerili
ENSHBUG00000020315csde110094.408ENSSLDG00000008819csde110094.408Seriola_lalandi_dorsalis
ENSHBUG00000020315csde110076.983ENSSARG00000000738CSDE19972.057Sorex_araneus
ENSHBUG00000020315csde110079.714ENSSPUG00000008714CSDE110079.324Sphenodon_punctatus
ENSHBUG00000020315csde110093.368ENSSPAG00000000716csde110093.368Stegastes_partitus
ENSHBUG00000020315csde110077.763ENSSSCG00000006752CSDE110077.763Sus_scrofa
ENSHBUG00000020315csde110075.187ENSTGUG00000000972CSDE110077.171Taeniopygia_guttata
ENSHBUG00000020315csde110086.216ENSTRUG00000007996csde110086.216Takifugu_rubripes
ENSHBUG00000020315csde18895.019ENSTNIG00000010878csde110095.019Tetraodon_nigroviridis
ENSHBUG00000020315csde19375.949ENSTBEG00000011880-6080.368Tupaia_belangeri
ENSHBUG00000020315csde110076.853ENSTTRG00000015583CSDE19476.853Tursiops_truncatus
ENSHBUG00000020315csde19282.353ENSUAMG00000021779-9882.609Ursus_americanus
ENSHBUG00000020315csde18973.034ENSUAMG00000024289-9973.034Ursus_americanus
ENSHBUG00000020315csde19771.065ENSUMAG00000011714-9972.749Ursus_maritimus
ENSHBUG00000020315csde110071.001ENSUMAG00000009720-9771.001Ursus_maritimus
ENSHBUG00000020315csde110080.420ENSVPAG00000000749CSDE17980.420Vicugna_pacos
ENSHBUG00000020315csde19372.886ENSVVUG00000009890CSDE19475.217Vulpes_vulpes
ENSHBUG00000020315csde110075.218ENSXETG00000021448csde110076.952Xenopus_tropicalis
ENSHBUG00000020315csde19494.553ENSXCOG00000000035csde18994.553Xiphophorus_couchianus
ENSHBUG00000020315csde110092.417ENSXMAG00000009080csde110092.417Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us