EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000021311 (Gene tree)
Gene ID: 102292757
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 20188 bases
Position: chrJH425830.1:276551-296738
Accession: 102292757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000034032	EST1	PF10374.9	8.9e-13	1	1
ENSHBUP00000034032	EST1_DNA_bind	PF10373.9	3.2e-54	1	1
ENSHBUP00000034032	PIN_4	PF13638.6	4.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000035381	-	7233	XM_005946800	ENSHBUP00000034032	1641 (aa)	XP_005946862	UPI0003BD9F9B

Gene Model

Click here to download ENSHBUG00000021311's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000021311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000021311	smg6	74	55.556	ENSG00000070366	SMG6	100	58.640	Homo_sapiens
ENSHBUG00000021311	smg6	100	79.916	ENSAPOG00000019448	smg6	100	80.753	Acanthochromis_polyacanthus
ENSHBUG00000021311	smg6	74	55.267	ENSAMEG00000007632	SMG6	72	59.447	Ailuropoda_melanoleuca
ENSHBUG00000021311	smg6	93	85.176	ENSACIG00000012997	smg6	100	84.460	Amphilophus_citrinellus
ENSHBUG00000021311	smg6	100	80.395	ENSAOCG00000002630	smg6	100	81.351	Amphiprion_ocellaris
ENSHBUG00000021311	smg6	100	80.335	ENSAPEG00000019101	smg6	100	81.291	Amphiprion_percula
ENSHBUG00000021311	smg6	100	75.671	ENSATEG00000006483	smg6	100	75.432	Anabas_testudineus
ENSHBUG00000021311	smg6	62	49.288	ENSACAG00000011783	SMG6	72	53.066	Anolis_carolinensis
ENSHBUG00000021311	smg6	74	55.469	ENSANAG00000035760	SMG6	83	54.545	Aotus_nancymaae
ENSHBUG00000021311	smg6	100	98.362	ENSACLG00000005288	smg6	100	98.494	Astatotilapia_calliptera
ENSHBUG00000021311	smg6	77	65.978	ENSAMXG00000017326	smg6	88	67.985	Astyanax_mexicanus
ENSHBUG00000021311	smg6	76	54.753	ENSBTAG00000000267	SMG6	86	54.469	Bos_taurus
ENSHBUG00000021311	smg6	74	55.564	ENSCJAG00000001820	SMG6	83	54.723	Callithrix_jacchus
ENSHBUG00000021311	smg6	74	55.816	ENSCAFG00000019260	SMG6	83	54.581	Canis_familiaris
ENSHBUG00000021311	smg6	74	55.816	ENSCAFG00020009770	SMG6	83	54.581	Canis_lupus_dingo
ENSHBUG00000021311	smg6	74	55.862	ENSCHIG00000021998	SMG6	83	55.284	Capra_hircus
ENSHBUG00000021311	smg6	74	55.321	ENSTSYG00000003406	SMG6	100	58.088	Carlito_syrichta
ENSHBUG00000021311	smg6	69	52.982	ENSCAPG00000016197	SMG6	67	52.418	Cavia_aperea
ENSHBUG00000021311	smg6	77	53.887	ENSCPOG00000014878	SMG6	90	58.667	Cavia_porcellus
ENSHBUG00000021311	smg6	74	55.634	ENSCCAG00000035801	SMG6	83	54.645	Cebus_capucinus
ENSHBUG00000021311	smg6	78	53.949	ENSCATG00000031956	SMG6	88	52.788	Cercocebus_atys
ENSHBUG00000021311	smg6	78	52.772	ENSCLAG00000006748	SMG6	84	59.434	Chinchilla_lanigera
ENSHBUG00000021311	smg6	80	53.299	ENSCSAG00000013800	SMG6	88	53.086	Chlorocebus_sabaeus
ENSHBUG00000021311	smg6	87	55.326	ENSCPBG00000020369	SMG6	87	59.012	Chrysemys_picta_bellii
ENSHBUG00000021311	smg6	80	53.299	ENSCANG00000031764	SMG6	100	59.007	Colobus_angolensis_palliatus
ENSHBUG00000021311	smg6	74	50.825	ENSCGRG00000007782	Smg6	89	49.095	Cricetulus_griseus_crigri
ENSHBUG00000021311	smg6	100	69.055	ENSCSEG00000012757	smg6	100	69.476	Cynoglossus_semilaevis
ENSHBUG00000021311	smg6	100	68.937	ENSCVAG00000012789	smg6	100	68.978	Cyprinodon_variegatus
ENSHBUG00000021311	smg6	100	56.971	ENSDARG00000100481	smg6	100	55.629	Danio_rerio
ENSHBUG00000021311	smg6	74	55.086	ENSDNOG00000048283	SMG6	86	53.252	Dasypus_novemcinctus
ENSHBUG00000021311	smg6	78	49.264	ENSDORG00000016614	Smg6	84	59.242	Dipodomys_ordii
ENSHBUG00000021311	smg6	62	87.500	ENSETEG00000016790	SMG6	59	87.500	Echinops_telfairi
ENSHBUG00000021311	smg6	59	47.647	ENSEBUG00000005059	smg6	63	47.041	Eptatretus_burgeri
ENSHBUG00000021311	smg6	74	55.722	ENSEASG00005009318	SMG6	71	59.502	Equus_asinus_asinus
ENSHBUG00000021311	smg6	74	55.722	ENSECAG00000006519	SMG6	71	59.502	Equus_caballus
ENSHBUG00000021311	smg6	74	47.082	ENSEEUG00000003493	SMG6	82	57.895	Erinaceus_europaeus
ENSHBUG00000021311	smg6	100	63.555	ENSELUG00000005934	smg6	98	68.717	Esox_lucius
ENSHBUG00000021311	smg6	74	55.721	ENSFCAG00000028817	SMG6	72	59.743	Felis_catus
ENSHBUG00000021311	smg6	78	53.662	ENSFALG00000006538	SMG6	89	52.054	Ficedula_albicollis
ENSHBUG00000021311	smg6	82	51.690	ENSFDAG00000015106	SMG6	84	58.962	Fukomys_damarensis
ENSHBUG00000021311	smg6	100	68.825	ENSFHEG00000013282	smg6	100	69.143	Fundulus_heteroclitus
ENSHBUG00000021311	smg6	74	55.020	ENSGALG00000003108	SMG6	85	51.916	Gallus_gallus
ENSHBUG00000021311	smg6	100	69.874	ENSGAFG00000000379	smg6	100	68.787	Gambusia_affinis
ENSHBUG00000021311	smg6	84	76.187	ENSGACG00000020521	smg6	99	76.847	Gasterosteus_aculeatus
ENSHBUG00000021311	smg6	74	54.389	ENSGAGG00000025617	SMG6	73	58.188	Gopherus_agassizii
ENSHBUG00000021311	smg6	74	55.634	ENSGGOG00000017156	SMG6	83	54.489	Gorilla_gorilla
ENSHBUG00000021311	smg6	80	52.540	ENSHGLG00000012882	SMG6	84	59.434	Heterocephalus_glaber_female
ENSHBUG00000021311	smg6	80	52.681	ENSHGLG00100017815	SMG6	84	59.434	Heterocephalus_glaber_male
ENSHBUG00000021311	smg6	65	70.522	ENSHCOG00000008761	smg6	83	69.643	Hippocampus_comes
ENSHBUG00000021311	smg6	100	54.362	ENSIPUG00000012493	smg6	100	53.459	Ictalurus_punctatus
ENSHBUG00000021311	smg6	78	53.466	ENSSTOG00000028127	SMG6	84	58.768	Ictidomys_tridecemlineatus
ENSHBUG00000021311	smg6	57	50.964	ENSJJAG00000015367	Smg6	78	49.405	Jaculus_jaculus
ENSHBUG00000021311	smg6	100	73.185	ENSKMAG00000000279	smg6	100	73.245	Kryptolebias_marmoratus
ENSHBUG00000021311	smg6	100	74.925	ENSLBEG00000002184	smg6	100	74.925	Labrus_bergylta
ENSHBUG00000021311	smg6	67	65.085	ENSLOCG00000006448	smg6	99	55.166	Lepisosteus_oculatus
ENSHBUG00000021311	smg6	74	55.164	ENSLAFG00000001261	SMG6	86	52.955	Loxodonta_africana
ENSHBUG00000021311	smg6	80	53.299	ENSMFAG00000003394	SMG6	88	53.086	Macaca_fascicularis
ENSHBUG00000021311	smg6	80	53.227	ENSMMUG00000023161	SMG6	88	53.011	Macaca_mulatta
ENSHBUG00000021311	smg6	77	52.093	ENSMNEG00000044592	SMG6	87	51.008	Macaca_nemestrina
ENSHBUG00000021311	smg6	73	60.213	ENSMLEG00000029353	SMG6	89	60.213	Mandrillus_leucophaeus
ENSHBUG00000021311	smg6	100	76.131	ENSMAMG00000020119	smg6	100	77.721	Mastacembelus_armatus
ENSHBUG00000021311	smg6	100	98.180	ENSMZEG00005024736	smg6	100	98.180	Maylandia_zebra
ENSHBUG00000021311	smg6	53	51.488	ENSMGAG00000005401	-	80	49.341	Meleagris_gallopavo
ENSHBUG00000021311	smg6	76	54.490	ENSMICG00000012913	SMG6	86	53.338	Microcebus_murinus
ENSHBUG00000021311	smg6	100	68.874	ENSMMOG00000010883	smg6	100	68.475	Mola_mola
ENSHBUG00000021311	smg6	74	55.748	ENSMODG00000010622	SMG6	72	59.707	Monodelphis_domestica
ENSHBUG00000021311	smg6	100	76.703	ENSMALG00000001106	smg6	100	76.464	Monopterus_albus
ENSHBUG00000021311	smg6	74	54.730	MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	Mus_caroli
ENSHBUG00000021311	smg6	74	54.867	ENSMUSG00000038290	Smg6	96	65.352	Mus_musculus
ENSHBUG00000021311	smg6	74	54.688	MGP_PahariEiJ_G0017866	Smg6	96	64.804	Mus_pahari
ENSHBUG00000021311	smg6	74	54.788	MGP_SPRETEiJ_G0017572	Smg6	96	65.070	Mus_spretus
ENSHBUG00000021311	smg6	74	55.765	ENSMPUG00000013046	SMG6	72	59.633	Mustela_putorius_furo
ENSHBUG00000021311	smg6	78	54.232	ENSMLUG00000005739	SMG6	88	52.889	Myotis_lucifugus
ENSHBUG00000021311	smg6	74	54.846	ENSNGAG00000007287	Smg6	84	58.768	Nannospalax_galili
ENSHBUG00000021311	smg6	98	93.035	ENSNBRG00000009511	smg6	99	95.702	Neolamprologus_brichardi
ENSHBUG00000021311	smg6	78	54.173	ENSNLEG00000017171	SMG6	100	58.640	Nomascus_leucogenys
ENSHBUG00000021311	smg6	74	55.035	ENSMEUG00000015804	SMG6	73	58.662	Notamacropus_eugenii
ENSHBUG00000021311	smg6	51	63.784	ENSOPRG00000000579	SMG6	79	63.978	Ochotona_princeps
ENSHBUG00000021311	smg6	76	48.483	ENSODEG00000008038	SMG6	81	52.907	Octodon_degus
ENSHBUG00000021311	smg6	100	96.301	ENSONIG00000005594	smg6	100	96.301	Oreochromis_niloticus
ENSHBUG00000021311	smg6	78	53.299	ENSOCUG00000013018	SMG6	89	52.557	Oryctolagus_cuniculus
ENSHBUG00000021311	smg6	100	67.506	ENSORLG00000003317	smg6	100	68.125	Oryzias_latipes
ENSHBUG00000021311	smg6	100	67.829	ENSORLG00020015343	smg6	100	68.029	Oryzias_latipes_hni
ENSHBUG00000021311	smg6	100	67.988	ENSORLG00015020454	smg6	100	68.607	Oryzias_latipes_hsok
ENSHBUG00000021311	smg6	100	67.750	ENSOMEG00000010838	smg6	100	68.671	Oryzias_melastigma
ENSHBUG00000021311	smg6	77	53.886	ENSOGAG00000004483	SMG6	87	52.235	Otolemur_garnettii
ENSHBUG00000021311	smg6	74	55.940	ENSOARG00000015076	SMG6	85	55.363	Ovis_aries
ENSHBUG00000021311	smg6	74	55.477	ENSPPAG00000043296	SMG6	85	53.623	Pan_paniscus
ENSHBUG00000021311	smg6	74	55.643	ENSPPRG00000014581	SMG6	72	59.743	Panthera_pardus
ENSHBUG00000021311	smg6	74	55.643	ENSPTIG00000008925	SMG6	100	58.824	Panthera_tigris_altaica
ENSHBUG00000021311	smg6	74	55.634	ENSPTRG00000008544	SMG6	100	58.640	Pan_troglodytes
ENSHBUG00000021311	smg6	78	54.173	ENSPANG00000024588	SMG6	88	53.011	Papio_anubis
ENSHBUG00000021311	smg6	69	52.007	ENSPSIG00000006660	SMG6	84	50.042	Pelodiscus_sinensis
ENSHBUG00000021311	smg6	95	79.589	ENSPMGG00000000844	smg6	99	79.452	Periophthalmus_magnuspinnatus
ENSHBUG00000021311	smg6	74	55.408	ENSPEMG00000020707	Smg6	85	58.294	Peromyscus_maniculatus_bairdii
ENSHBUG00000021311	smg6	100	70.991	ENSPFOG00000012035	smg6	99	73.579	Poecilia_formosa
ENSHBUG00000021311	smg6	100	70.906	ENSPLAG00000017660	smg6	100	70.174	Poecilia_latipinna
ENSHBUG00000021311	smg6	100	71.051	ENSPMEG00000000258	smg6	100	70.114	Poecilia_mexicana
ENSHBUG00000021311	smg6	100	70.504	ENSPREG00000010066	smg6	100	70.048	Poecilia_reticulata
ENSHBUG00000021311	smg6	74	51.832	ENSPPYG00000007790	SMG6	85	49.281	Pongo_abelii
ENSHBUG00000021311	smg6	74	60.183	ENSPCAG00000000552	SMG6	84	60.183	Procavia_capensis
ENSHBUG00000021311	smg6	76	54.221	ENSPCOG00000020925	SMG6	86	53.146	Propithecus_coquereli
ENSHBUG00000021311	smg6	70	62.968	ENSPVAG00000002159	SMG6	72	55.242	Pteropus_vampyrus
ENSHBUG00000021311	smg6	93	92.946	ENSPNYG00000024151	smg6	99	95.565	Pundamilia_nyererei
ENSHBUG00000021311	smg6	100	53.373	ENSPNAG00000015480	smg6	100	51.950	Pygocentrus_nattereri
ENSHBUG00000021311	smg6	76	53.701	ENSRNOG00000003041	Smg6	97	64.754	Rattus_norvegicus
ENSHBUG00000021311	smg6	80	53.813	ENSRBIG00000024746	SMG6	88	53.662	Rhinopithecus_bieti
ENSHBUG00000021311	smg6	78	54.322	ENSRROG00000030423	SMG6	100	59.007	Rhinopithecus_roxellana
ENSHBUG00000021311	smg6	74	55.269	ENSSBOG00000022518	SMG6	83	52.927	Saimiri_boliviensis_boliviensis
ENSHBUG00000021311	smg6	74	55.834	ENSSHAG00000010045	SMG6	71	59.286	Sarcophilus_harrisii
ENSHBUG00000021311	smg6	94	54.914	ENSSFOG00015005436	smg6	91	55.038	Scleropages_formosus
ENSHBUG00000021311	smg6	100	75.224	ENSSMAG00000019777	smg6	100	74.866	Scophthalmus_maximus
ENSHBUG00000021311	smg6	100	80.562	ENSSDUG00000016412	smg6	100	80.323	Seriola_dumerili
ENSHBUG00000021311	smg6	91	80.817	ENSSLDG00000020747	smg6	98	80.554	Seriola_lalandi_dorsalis
ENSHBUG00000021311	smg6	74	54.154	ENSSPUG00000007152	SMG6	89	50.480	Sphenodon_punctatus
ENSHBUG00000021311	smg6	100	80.084	ENSSPAG00000015633	smg6	100	80.562	Stegastes_partitus
ENSHBUG00000021311	smg6	74	55.931	ENSSSCG00000017826	SMG6	83	54.695	Sus_scrofa
ENSHBUG00000021311	smg6	74	55.153	ENSTGUG00000005836	SMG6	83	53.470	Taeniopygia_guttata
ENSHBUG00000021311	smg6	100	68.387	ENSTRUG00000000358	smg6	100	73.572	Takifugu_rubripes
ENSHBUG00000021311	smg6	91	78.485	ENSTNIG00000016164	smg6	99	78.646	Tetraodon_nigroviridis
ENSHBUG00000021311	smg6	74	52.826	ENSTBEG00000011424	SMG6	83	52.160	Tupaia_belangeri
ENSHBUG00000021311	smg6	66	56.958	ENSTTRG00000001175	SMG6	77	56.815	Tursiops_truncatus
ENSHBUG00000021311	smg6	74	55.234	ENSUAMG00000025152	SMG6	73	59.469	Ursus_americanus
ENSHBUG00000021311	smg6	74	55.373	ENSUMAG00000009306	SMG6	85	54.503	Ursus_maritimus
ENSHBUG00000021311	smg6	60	95.833	ENSVPAG00000000225	SMG6	58	95.833	Vicugna_pacos
ENSHBUG00000021311	smg6	74	56.490	ENSVVUG00000021727	SMG6	84	55.369	Vulpes_vulpes
ENSHBUG00000021311	smg6	66	55.596	ENSXETG00000023799	SMG6	85	50.994	Xenopus_tropicalis
ENSHBUG00000021311	smg6	98	69.014	ENSXCOG00000009867	smg6	99	68.096	Xiphophorus_couchianus
ENSHBUG00000021311	smg6	100	70.395	ENSXMAG00000010321	smg6	100	69.599	Xiphophorus_maculatus