EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000021959 (Gene tree)
Gene ID: 102289683
Gene Symbol: a1cf
Alias: acf
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 19395 bases
Position: chrJH425942.1:1718-21112
Accession: 102289683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000019728	DND1_DSRM	PF14709.7	1.8e-26	1	1
ENSHBUP00000019728	RRM_1	PF00076.22	1.5e-41	1	3
ENSHBUP00000019728	RRM_1	PF00076.22	1.5e-41	2	3
ENSHBUP00000019728	RRM_1	PF00076.22	1.5e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000029175	-	5731	XM_005948474	ENSHBUP00000019728	604 (aa)	XP_005948536	UPI0003BDC25D

Gene Model

Click here to download ENSHBUG00000021959's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000021959's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000021959	a1cf	87	52.852	ENSHBUG00000003520	rbm47	56	71.617

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000021959	a1cf	100	77.190	ENSG00000148584	A1CF	100	89.109	Homo_sapiens
ENSHBUG00000021959	a1cf	100	84.514	ENSAPOG00000008259	a1cf	100	83.690	Acanthochromis_polyacanthus
ENSHBUG00000021959	a1cf	100	76.059	ENSAMEG00000000523	A1CF	100	73.899	Ailuropoda_melanoleuca
ENSHBUG00000021959	a1cf	100	95.364	ENSACIG00000008632	a1cf	100	95.364	Amphilophus_citrinellus
ENSHBUG00000021959	a1cf	100	86.820	ENSAOCG00000023744	a1cf	97	90.598	Amphiprion_ocellaris
ENSHBUG00000021959	a1cf	100	85.854	ENSAPEG00000009537	a1cf	100	85.691	Amphiprion_percula
ENSHBUG00000021959	a1cf	100	91.269	ENSATEG00000013720	a1cf	100	90.280	Anabas_testudineus
ENSHBUG00000021959	a1cf	100	77.162	ENSAPLG00000002964	A1CF	100	75.041	Anas_platyrhynchos
ENSHBUG00000021959	a1cf	100	77.355	ENSACAG00000015269	A1CF	100	75.537	Anolis_carolinensis
ENSHBUG00000021959	a1cf	100	77.686	ENSANAG00000019974	A1CF	100	75.702	Aotus_nancymaae
ENSHBUG00000021959	a1cf	100	96.358	ENSACLG00000017428	a1cf	100	96.358	Astatotilapia_calliptera
ENSHBUG00000021959	a1cf	100	75.689	ENSAMXG00000018180	a1cf	100	75.081	Astyanax_mexicanus
ENSHBUG00000021959	a1cf	100	77.851	ENSBTAG00000021195	A1CF	100	77.658	Bos_taurus
ENSHBUG00000021959	a1cf	100	76.509	ENSCJAG00000005045	A1CF	100	74.551	Callithrix_jacchus
ENSHBUG00000021959	a1cf	100	76.020	ENSCAFG00000015581	A1CF	100	74.388	Canis_familiaris
ENSHBUG00000021959	a1cf	100	76.020	ENSCAFG00020026421	A1CF	98	82.333	Canis_lupus_dingo
ENSHBUG00000021959	a1cf	100	77.325	ENSCHIG00000020411	A1CF	100	75.530	Capra_hircus
ENSHBUG00000021959	a1cf	94	77.408	ENSTSYG00000001755	A1CF	100	75.131	Carlito_syrichta
ENSHBUG00000021959	a1cf	100	73.761	ENSCAPG00000017386	A1CF	95	76.038	Cavia_aperea
ENSHBUG00000021959	a1cf	100	75.367	ENSCPOG00000009807	A1CF	100	72.920	Cavia_porcellus
ENSHBUG00000021959	a1cf	100	76.346	ENSCCAG00000018168	A1CF	100	74.225	Cebus_capucinus
ENSHBUG00000021959	a1cf	100	77.025	ENSCATG00000043715	A1CF	100	75.702	Cercocebus_atys
ENSHBUG00000021959	a1cf	100	75.367	ENSCLAG00000010424	A1CF	100	73.409	Chinchilla_lanigera
ENSHBUG00000021959	a1cf	100	76.346	ENSCSAG00000007032	A1CF	100	75.041	Chlorocebus_sabaeus
ENSHBUG00000021959	a1cf	98	74.415	ENSCHOG00000009089	A1CF	98	72.408	Choloepus_hoffmanni
ENSHBUG00000021959	a1cf	100	76.835	ENSCPBG00000026464	A1CF	100	74.878	Chrysemys_picta_bellii
ENSHBUG00000021959	a1cf	100	76.183	ENSCANG00000038032	A1CF	100	74.878	Colobus_angolensis_palliatus
ENSHBUG00000021959	a1cf	100	75.367	ENSCGRG00001017413	A1cf	100	73.573	Cricetulus_griseus_chok1gshd
ENSHBUG00000021959	a1cf	100	74.634	ENSCGRG00000017332	A1cf	100	73.083	Cricetulus_griseus_crigri
ENSHBUG00000021959	a1cf	100	85.877	ENSCSEG00000002361	a1cf	100	86.526	Cynoglossus_semilaevis
ENSHBUG00000021959	a1cf	100	89.292	ENSCVAG00000010520	a1cf	100	89.127	Cyprinodon_variegatus
ENSHBUG00000021959	a1cf	100	82.645	ENSDARG00000002968	a1cf	100	81.818	Danio_rerio
ENSHBUG00000021959	a1cf	100	75.856	ENSDNOG00000002829	A1CF	100	73.899	Dasypus_novemcinctus
ENSHBUG00000021959	a1cf	82	85.507	ENSETEG00000012527	A1CF	81	85.507	Echinops_telfairi
ENSHBUG00000021959	a1cf	100	76.547	ENSEASG00005012924	A1CF	100	74.756	Equus_asinus_asinus
ENSHBUG00000021959	a1cf	100	76.059	ENSECAG00000010424	A1CF	100	74.267	Equus_caballus
ENSHBUG00000021959	a1cf	78	68.000	ENSEEUG00000000013	A1CF	97	66.376	Erinaceus_europaeus
ENSHBUG00000021959	a1cf	100	80.914	ENSELUG00000003159	a1cf	100	80.098	Esox_lucius
ENSHBUG00000021959	a1cf	100	76.198	ENSFCAG00000011179	A1CF	100	75.041	Felis_catus
ENSHBUG00000021959	a1cf	100	78.678	ENSFALG00000013183	A1CF	100	76.860	Ficedula_albicollis
ENSHBUG00000021959	a1cf	100	76.198	ENSFDAG00000019371	A1CF	100	74.215	Fukomys_damarensis
ENSHBUG00000021959	a1cf	100	83.306	ENSFHEG00000019652	a1cf	96	91.406	Fundulus_heteroclitus
ENSHBUG00000021959	a1cf	100	77.833	ENSGMOG00000018943	a1cf	100	76.519	Gadus_morhua
ENSHBUG00000021959	a1cf	96	76.701	ENSGALG00000003765	A1CF	96	75.345	Gallus_gallus
ENSHBUG00000021959	a1cf	100	82.372	ENSGAFG00000014868	a1cf	100	81.219	Gambusia_affinis
ENSHBUG00000021959	a1cf	100	86.179	ENSGACG00000010241	a1cf	100	85.041	Gasterosteus_aculeatus
ENSHBUG00000021959	a1cf	96	75.680	ENSGAGG00000016508	A1CF	98	73.639	Gopherus_agassizii
ENSHBUG00000021959	a1cf	100	76.183	ENSGGOG00000009670	A1CF	100	74.225	Gorilla_gorilla
ENSHBUG00000021959	a1cf	100	75.367	ENSHGLG00000008955	A1CF	100	73.736	Heterocephalus_glaber_female
ENSHBUG00000021959	a1cf	100	74.715	ENSHGLG00100000518	A1CF	100	73.083	Heterocephalus_glaber_male
ENSHBUG00000021959	a1cf	100	75.441	ENSHCOG00000017669	a1cf	100	76.726	Hippocampus_comes
ENSHBUG00000021959	a1cf	89	83.789	ENSIPUG00000010367	a1cf	96	82.878	Ictalurus_punctatus
ENSHBUG00000021959	a1cf	100	87.864	ENSKMAG00000006568	a1cf	100	86.408	Kryptolebias_marmoratus
ENSHBUG00000021959	a1cf	99	88.618	ENSLBEG00000020994	a1cf	99	87.480	Labrus_bergylta
ENSHBUG00000021959	a1cf	100	79.174	ENSLACG00000008061	A1CF	100	77.521	Latimeria_chalumnae
ENSHBUG00000021959	a1cf	100	80.914	ENSLOCG00000006302	a1cf	100	78.467	Lepisosteus_oculatus
ENSHBUG00000021959	a1cf	100	76.183	ENSLAFG00000015462	A1CF	100	75.856	Loxodonta_africana
ENSHBUG00000021959	a1cf	100	77.190	ENSMFAG00000035948	A1CF	100	75.868	Macaca_fascicularis
ENSHBUG00000021959	a1cf	100	77.190	ENSMMUG00000007077	A1CF	100	75.868	Macaca_mulatta
ENSHBUG00000021959	a1cf	100	77.025	ENSMNEG00000031454	A1CF	100	75.702	Macaca_nemestrina
ENSHBUG00000021959	a1cf	100	76.020	ENSMLEG00000037223	A1CF	100	74.715	Mandrillus_leucophaeus
ENSHBUG00000021959	a1cf	100	89.967	ENSMAMG00000010402	a1cf	100	88.651	Mastacembelus_armatus
ENSHBUG00000021959	a1cf	100	93.301	ENSMZEG00005013245	a1cf	100	93.301	Maylandia_zebra
ENSHBUG00000021959	a1cf	100	76.710	ENSMGAG00000001507	A1CF	100	74.919	Meleagris_gallopavo
ENSHBUG00000021959	a1cf	100	75.041	ENSMAUG00000007422	A1cf	100	73.409	Mesocricetus_auratus
ENSHBUG00000021959	a1cf	100	76.606	ENSMICG00000003377	A1CF	100	76.442	Microcebus_murinus
ENSHBUG00000021959	a1cf	100	76.183	ENSMOCG00000021536	A1cf	100	74.225	Microtus_ochrogaster
ENSHBUG00000021959	a1cf	100	79.242	ENSMMOG00000009422	a1cf	100	78.748	Mola_mola
ENSHBUG00000021959	a1cf	89	79.664	ENSMODG00000016478	A1CF	97	77.985	Monodelphis_domestica
ENSHBUG00000021959	a1cf	100	81.457	ENSMALG00000012992	a1cf	100	81.291	Monopterus_albus
ENSHBUG00000021959	a1cf	100	76.198	MGP_CAROLIEiJ_G0022873	A1cf	100	74.215	Mus_caroli
ENSHBUG00000021959	a1cf	100	76.198	ENSMUSG00000052595	A1cf	99	82.078	Mus_musculus
ENSHBUG00000021959	a1cf	100	75.537	MGP_PahariEiJ_G0014366	A1cf	100	73.554	Mus_pahari
ENSHBUG00000021959	a1cf	100	76.733	MGP_SPRETEiJ_G0023792	A1cf	100	74.752	Mus_spretus
ENSHBUG00000021959	a1cf	100	70.310	ENSMPUG00000016971	A1CF	100	68.679	Mustela_putorius_furo
ENSHBUG00000021959	a1cf	100	76.260	ENSMLUG00000016071	A1CF	100	74.715	Myotis_lucifugus
ENSHBUG00000021959	a1cf	100	76.020	ENSNGAG00000015136	A1cf	100	74.062	Nannospalax_galili
ENSHBUG00000021959	a1cf	100	99.172	ENSNBRG00000001712	a1cf	100	99.172	Neolamprologus_brichardi
ENSHBUG00000021959	a1cf	100	76.672	ENSNLEG00000012028	A1CF	100	74.715	Nomascus_leucogenys
ENSHBUG00000021959	a1cf	94	77.583	ENSMEUG00000015909	A1CF	100	76.007	Notamacropus_eugenii
ENSHBUG00000021959	a1cf	88	68.704	ENSOPRG00000010667	A1CF	100	65.480	Ochotona_princeps
ENSHBUG00000021959	a1cf	100	98.841	ENSONIG00000019105	a1cf	100	98.841	Oreochromis_niloticus
ENSHBUG00000021959	a1cf	78	77.637	ENSOANG00000007360	A1CF	99	76.371	Ornithorhynchus_anatinus
ENSHBUG00000021959	a1cf	100	76.694	ENSOCUG00000011587	A1CF	100	74.711	Oryctolagus_cuniculus
ENSHBUG00000021959	a1cf	100	83.902	ENSORLG00000013342	a1cf	100	82.927	Oryzias_latipes
ENSHBUG00000021959	a1cf	100	85.877	ENSORLG00020000586	a1cf	100	85.227	Oryzias_latipes_hni
ENSHBUG00000021959	a1cf	100	85.877	ENSORLG00015018569	a1cf	100	85.227	Oryzias_latipes_hsok
ENSHBUG00000021959	a1cf	100	87.644	ENSOMEG00000013531	a1cf	100	86.326	Oryzias_melastigma
ENSHBUG00000021959	a1cf	100	75.041	ENSOGAG00000012884	A1CF	100	74.062	Otolemur_garnettii
ENSHBUG00000021959	a1cf	100	76.998	ENSOARG00000013695	A1CF	100	75.204	Ovis_aries
ENSHBUG00000021959	a1cf	97	75.084	ENSPPAG00000028115	A1CF	99	77.407	Pan_paniscus
ENSHBUG00000021959	a1cf	100	75.204	ENSPPRG00000012180	A1CF	100	74.062	Panthera_pardus
ENSHBUG00000021959	a1cf	100	75.204	ENSPTIG00000021223	A1CF	100	74.062	Panthera_tigris_altaica
ENSHBUG00000021959	a1cf	100	77.190	ENSPTRG00000002508	A1CF	100	75.207	Pan_troglodytes
ENSHBUG00000021959	a1cf	100	77.190	ENSPANG00000021988	A1CF	100	75.868	Papio_anubis
ENSHBUG00000021959	a1cf	100	80.750	ENSPKIG00000025176	a1cf	100	80.261	Paramormyrops_kingsleyae
ENSHBUG00000021959	a1cf	100	77.686	ENSPSIG00000010318	A1CF	100	76.033	Pelodiscus_sinensis
ENSHBUG00000021959	a1cf	98	71.212	ENSPMGG00000013359	a1cf	99	72.773	Periophthalmus_magnuspinnatus
ENSHBUG00000021959	a1cf	100	75.530	ENSPEMG00000015021	A1cf	100	73.573	Peromyscus_maniculatus_bairdii
ENSHBUG00000021959	a1cf	100	76.694	ENSPCIG00000002175	A1CF	100	76.364	Phascolarctos_cinereus
ENSHBUG00000021959	a1cf	100	87.805	ENSPFOG00000007437	-	100	87.642	Poecilia_formosa
ENSHBUG00000021959	a1cf	100	87.805	ENSPFOG00000006683	a1cf	100	87.642	Poecilia_formosa
ENSHBUG00000021959	a1cf	100	89.127	ENSPLAG00000001210	-	100	88.962	Poecilia_latipinna
ENSHBUG00000021959	a1cf	100	89.127	ENSPLAG00000000026	a1cf	100	88.962	Poecilia_latipinna
ENSHBUG00000021959	a1cf	100	79.902	ENSPMEG00000015529	-	100	79.739	Poecilia_mexicana
ENSHBUG00000021959	a1cf	100	80.960	ENSPMEG00000000921	a1cf	100	80.795	Poecilia_mexicana
ENSHBUG00000021959	a1cf	100	87.480	ENSPREG00000016298	a1cf	100	87.317	Poecilia_reticulata
ENSHBUG00000021959	a1cf	100	77.686	ENSPPYG00000002819	A1CF	100	75.702	Pongo_abelii
ENSHBUG00000021959	a1cf	80	60.373	ENSPCAG00000006463	A1CF	79	59.917	Procavia_capensis
ENSHBUG00000021959	a1cf	100	75.530	ENSPCOG00000024172	A1CF	100	75.204	Propithecus_coquereli
ENSHBUG00000021959	a1cf	100	98.366	ENSPNYG00000017944	a1cf	100	98.366	Pundamilia_nyererei
ENSHBUG00000021959	a1cf	100	84.375	ENSPNAG00000007704	a1cf	100	83.526	Pygocentrus_nattereri
ENSHBUG00000021959	a1cf	100	77.025	ENSRNOG00000033195	A1cf	100	75.041	Rattus_norvegicus
ENSHBUG00000021959	a1cf	100	70.894	ENSRBIG00000042892	A1CF	100	73.654	Rhinopithecus_bieti
ENSHBUG00000021959	a1cf	100	76.183	ENSRROG00000041398	A1CF	100	74.878	Rhinopithecus_roxellana
ENSHBUG00000021959	a1cf	100	76.998	ENSSBOG00000021930	A1CF	100	75.041	Saimiri_boliviensis_boliviensis
ENSHBUG00000021959	a1cf	100	77.686	ENSSHAG00000005096	A1CF	100	75.702	Sarcophilus_harrisii
ENSHBUG00000021959	a1cf	100	83.855	ENSSFOG00015011774	a1cf	100	83.196	Scleropages_formosus
ENSHBUG00000021959	a1cf	100	89.723	ENSSMAG00000013271	a1cf	100	87.928	Scophthalmus_maximus
ENSHBUG00000021959	a1cf	100	88.780	ENSSDUG00000013930	a1cf	100	88.293	Seriola_dumerili
ENSHBUG00000021959	a1cf	100	83.775	ENSSLDG00000004290	a1cf	100	83.775	Seriola_lalandi_dorsalis
ENSHBUG00000021959	a1cf	95	69.686	ENSSARG00000005940	A1CF	95	69.338	Sorex_araneus
ENSHBUG00000021959	a1cf	97	73.490	ENSSPUG00000006797	A1CF	95	72.232	Sphenodon_punctatus
ENSHBUG00000021959	a1cf	100	77.651	ENSSSCG00000010431	A1CF	100	75.856	Sus_scrofa
ENSHBUG00000021959	a1cf	100	77.524	ENSTGUG00000005090	A1CF	100	75.407	Taeniopygia_guttata
ENSHBUG00000021959	a1cf	100	86.039	ENSTRUG00000001982	a1cf	100	84.740	Takifugu_rubripes
ENSHBUG00000021959	a1cf	100	86.062	ENSTNIG00000003580	a1cf	100	84.603	Tetraodon_nigroviridis
ENSHBUG00000021959	a1cf	97	72.696	ENSTTRG00000013190	A1CF	95	70.990	Tursiops_truncatus
ENSHBUG00000021959	a1cf	100	77.025	ENSUAMG00000020065	A1CF	100	74.876	Ursus_americanus
ENSHBUG00000021959	a1cf	100	75.530	ENSUMAG00000011162	A1CF	100	73.573	Ursus_maritimus
ENSHBUG00000021959	a1cf	87	75.047	ENSVPAG00000006130	A1CF	86	72.779	Vicugna_pacos
ENSHBUG00000021959	a1cf	100	77.190	ENSVVUG00000002504	A1CF	100	75.537	Vulpes_vulpes
ENSHBUG00000021959	a1cf	100	70.310	ENSXETG00000006611	a1cf	100	69.494	Xenopus_tropicalis
ENSHBUG00000021959	a1cf	100	90.280	ENSXCOG00000003302	a1cf	100	88.797	Xiphophorus_couchianus
ENSHBUG00000021959	a1cf	100	89.106	ENSXMAG00000016703	a1cf	100	87.642	Xiphophorus_maculatus