EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000022060 (Gene tree)
Gene ID: 102298389
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 3277 bases
Position: chrJH425358.1:972241-975517
Accession: 102298389
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000019844	RRM_1	PF00076.22	1.4e-25	1	1
ENSHBUP00000034493	RRM_1	PF00076.22	1.4e-25	1	1
ENSHBUP00000019830	RRM_1	PF00076.22	1.5e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000029317	-	554	-	ENSHBUP00000034493	180 (aa)	-	UPI000329C8C2
ENSHBUT00000035676	-	640	XM_005920485	ENSHBUP00000019844	180 (aa)	XP_005920547	UPI00032A13A5
ENSHBUT00000035674	-	593	XM_005920484	ENSHBUP00000019830	183 (aa)	XP_005920546	UPI00022AF498

Gene Model

Click here to download ENSHBUG00000022060's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000022060's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000022060	cirbpa	50	38.889	ENSHBUG00000007503	-	68	38.889
ENSHBUG00000022060	cirbpa	50	34.783	ENSHBUG00000003073	srsf3b	57	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000022060	cirbpa	73	92.481	ENSAPOG00000004458	cirbpa	100	72.396	Acanthochromis_polyacanthus
ENSHBUG00000022060	cirbpa	99	91.061	ENSACIG00000016116	cirbpa	100	87.978	Amphilophus_citrinellus
ENSHBUG00000022060	cirbpa	100	70.588	ENSAOCG00000016212	cirbpa	100	68.063	Amphiprion_ocellaris
ENSHBUG00000022060	cirbpa	100	70.811	ENSAPEG00000011989	cirbpa	100	68.783	Amphiprion_percula
ENSHBUG00000022060	cirbpa	100	87.912	ENSATEG00000014985	cirbpa	100	88.108	Anabas_testudineus
ENSHBUG00000022060	cirbpa	100	100.000	ENSACLG00000002094	-	100	100.000	Astatotilapia_calliptera
ENSHBUG00000022060	cirbpa	100	56.796	ENSAMXG00000015612	cirbpb	82	58.730	Astyanax_mexicanus
ENSHBUG00000022060	cirbpa	100	64.975	ENSCSEG00000014344	cirbpa	100	62.944	Cynoglossus_semilaevis
ENSHBUG00000022060	cirbpa	100	81.818	ENSCVAG00000004853	cirbpa	100	81.818	Cyprinodon_variegatus
ENSHBUG00000022060	cirbpa	100	57.447	ENSDARG00000103672	cirbpa	100	56.915	Danio_rerio
ENSHBUG00000022060	cirbpa	100	76.630	ENSFHEG00000002580	cirbpa	100	80.645	Fundulus_heteroclitus
ENSHBUG00000022060	cirbpa	100	77.005	ENSGAFG00000008654	cirbpa	100	82.888	Gambusia_affinis
ENSHBUG00000022060	cirbpa	100	62.694	ENSGACG00000015206	cirbpa	100	59.694	Gasterosteus_aculeatus
ENSHBUG00000022060	cirbpa	100	79.121	ENSKMAG00000005905	cirbpa	100	77.049	Kryptolebias_marmoratus
ENSHBUG00000022060	cirbpa	65	75.424	ENSLBEG00000027731	-	66	83.951	Labrus_bergylta
ENSHBUG00000022060	cirbpa	100	65.027	ENSLBEG00000000292	cirbpa	100	62.842	Labrus_bergylta
ENSHBUG00000022060	cirbpa	100	82.609	ENSMAMG00000010168	cirbpa	100	85.326	Mastacembelus_armatus
ENSHBUG00000022060	cirbpa	100	100.000	ENSMZEG00005025577	-	100	100.000	Maylandia_zebra
ENSHBUG00000022060	cirbpa	100	87.293	ENSMALG00000020092	cirbpa	100	89.130	Monopterus_albus
ENSHBUG00000022060	cirbpa	100	100.000	ENSNBRG00000019658	cirbpa	100	100.000	Neolamprologus_brichardi
ENSHBUG00000022060	cirbpa	99	96.089	ENSONIG00000010169	cirbpa	98	96.089	Oreochromis_niloticus
ENSHBUG00000022060	cirbpa	100	82.703	ENSORLG00000015433	cirbpa	98	81.461	Oryzias_latipes
ENSHBUG00000022060	cirbpa	100	82.703	ENSORLG00020016909	cirbpa	98	81.461	Oryzias_latipes_hni
ENSHBUG00000022060	cirbpa	100	82.703	ENSORLG00015016636	cirbpa	100	79.459	Oryzias_latipes_hsok
ENSHBUG00000022060	cirbpa	100	82.320	ENSOMEG00000021469	cirbpa	73	80.435	Oryzias_melastigma
ENSHBUG00000022060	cirbpa	100	62.304	ENSPKIG00000010561	cirbpa	100	63.874	Paramormyrops_kingsleyae
ENSHBUG00000022060	cirbpa	99	73.656	ENSPMGG00000017342	cirbpa	95	73.262	Periophthalmus_magnuspinnatus
ENSHBUG00000022060	cirbpa	100	80.952	ENSPFOG00000015653	cirbpa	100	84.127	Poecilia_formosa
ENSHBUG00000022060	cirbpa	100	81.081	ENSPLAG00000011125	cirbpa	100	84.492	Poecilia_latipinna
ENSHBUG00000022060	cirbpa	100	81.383	ENSPMEG00000013878	cirbpa	100	84.574	Poecilia_mexicana
ENSHBUG00000022060	cirbpa	99	86.188	ENSPREG00000018042	cirbpa	98	85.870	Poecilia_reticulata
ENSHBUG00000022060	cirbpa	100	100.000	ENSPNYG00000007198	-	100	100.000	Pundamilia_nyererei
ENSHBUG00000022060	cirbpa	100	60.099	ENSPNAG00000019997	cirbpb	100	58.621	Pygocentrus_nattereri
ENSHBUG00000022060	cirbpa	100	61.702	ENSSFOG00015005346	cirbpb	100	60.638	Scleropages_formosus
ENSHBUG00000022060	cirbpa	100	58.201	ENSSFOG00015009951	cirbpa	100	60.847	Scleropages_formosus
ENSHBUG00000022060	cirbpa	100	70.000	ENSSMAG00000002412	cirbpa	100	63.131	Scophthalmus_maximus
ENSHBUG00000022060	cirbpa	63	97.368	ENSSLDG00000011320	cirbpa	55	97.368	Seriola_lalandi_dorsalis
ENSHBUG00000022060	cirbpa	100	70.109	ENSSPAG00000023037	cirbpa	50	97.531	Stegastes_partitus
ENSHBUG00000022060	cirbpa	100	73.224	ENSTRUG00000010187	cirbpa	100	71.038	Takifugu_rubripes
ENSHBUG00000022060	cirbpa	100	74.457	ENSTNIG00000000450	cirbpa	100	72.826	Tetraodon_nigroviridis
ENSHBUG00000022060	cirbpa	99	85.635	ENSXCOG00000008262	cirbpa	92	95.890	Xiphophorus_couchianus
ENSHBUG00000022060	cirbpa	100	85.946	ENSXMAG00000019336	cirbpa	100	88.108	Xiphophorus_maculatus