EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000000266 (Gene tree)
Gene ID: 109508953
Gene Symbol: msi2a
Alias: cb746|fi47b09|msi2|wu:fb02d08|wu:fi32d12|wu:fi47b09
Full Name: musashi RNA binding protein 2
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 226563 bases
Position: chrKV880524.1:26086-252648
Accession: 109508953
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000021355	RRM_1	PF00076.22	1.2e-33	1	2
ENSHCOP00000021355	RRM_1	PF00076.22	1.2e-33	2	2
ENSHCOP00000021366	RRM_1	PF00076.22	2e-33	1	2
ENSHCOP00000021366	RRM_1	PF00076.22	2e-33	2	2
ENSHCOP00000006335	RRM_1	PF00076.22	2.1e-33	1	2
ENSHCOP00000006335	RRM_1	PF00076.22	2.1e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000003860	-	1835	XM_019858878	ENSHCOP00000021355	350 (aa)	XP_019714437	-
ENSHCOT00000003835	-	2087	XM_019858880	ENSHCOP00000006335	407 (aa)	XP_019714439	UPI00094E6AEC
ENSHCOT00000003846	-	2015	-	ENSHCOP00000021366	410 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000000266's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000000266's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000000266	msi2a	57	35.683	ENSHCOG00000019526	hnrnpa1b	86	35.484
ENSHCOG00000000266	msi2a	52	35.404	ENSHCOG00000007174	HNRNPA0	90	35.404
ENSHCOG00000000266	msi2a	50	47.701	ENSHCOG00000015341	hnrnpaba	71	45.876
ENSHCOG00000000266	msi2a	52	39.130	ENSHCOG00000000313	HNRNPA3	56	39.130
ENSHCOG00000000266	msi2a	52	37.791	ENSHCOG00000007180	-	99	35.685
ENSHCOG00000000266	msi2a	57	44.019	ENSHCOG00000000087	hnrnpd	68	46.809
ENSHCOG00000000266	msi2a	96	63.714	ENSHCOG00000012067	-	97	71.705
ENSHCOG00000000266	msi2a	94	79.577	ENSHCOG00000017241	-	98	71.571
ENSHCOG00000000266	msi2a	88	69.453	ENSHCOG00000012019	MSI1	94	68.167
ENSHCOG00000000266	msi2a	50	47.701	ENSHCOG00000009363	-	53	48.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000000266	msi2a	97	84.911	ENSG00000153944	MSI2	97	92.829	Homo_sapiens
ENSHCOG00000000266	msi2a	100	98.280	ENSAPOG00000001658	msi2a	100	99.588	Acanthochromis_polyacanthus
ENSHCOG00000000266	msi2a	91	85.358	ENSAMEG00000002697	MSI2	97	85.804	Ailuropoda_melanoleuca
ENSHCOG00000000266	msi2a	100	88.808	ENSACIG00000009475	msi2a	100	88.808	Amphilophus_citrinellus
ENSHCOG00000000266	msi2a	54	81.333	ENSAOCG00000014822	msi2a	69	81.333	Amphiprion_ocellaris
ENSHCOG00000000266	msi2a	97	97.337	ENSAPEG00000007706	msi2a	97	99.293	Amphiprion_percula
ENSHCOG00000000266	msi2a	91	84.375	ENSATEG00000003301	-	97	94.527	Anabas_testudineus
ENSHCOG00000000266	msi2a	100	98.280	ENSATEG00000010498	msi2a	100	99.588	Anabas_testudineus
ENSHCOG00000000266	msi2a	80	92.935	ENSACAG00000005452	MSI2	88	75.067	Anolis_carolinensis
ENSHCOG00000000266	msi2a	97	84.911	ENSANAG00000037827	MSI2	97	92.829	Aotus_nancymaae
ENSHCOG00000000266	msi2a	100	98.280	ENSACLG00000007752	msi2a	100	99.177	Astatotilapia_calliptera
ENSHCOG00000000266	msi2a	100	87.990	ENSAMXG00000032796	msi2a	97	96.016	Astyanax_mexicanus
ENSHCOG00000000266	msi2a	100	87.715	ENSAMXG00000010474	msi2b	94	96.396	Astyanax_mexicanus
ENSHCOG00000000266	msi2a	91	84.858	ENSBTAG00000004406	MSI2	94	93.913	Bos_taurus
ENSHCOG00000000266	msi2a	67	58.233	WBGene00003423	msi-1	76	58.233	Caenorhabditis_elegans
ENSHCOG00000000266	msi2a	97	84.911	ENSCJAG00000013998	MSI2	97	92.829	Callithrix_jacchus
ENSHCOG00000000266	msi2a	91	84.590	ENSCAFG00020025620	MSI2	79	84.244	Canis_lupus_dingo
ENSHCOG00000000266	msi2a	97	84.024	ENSCHIG00000016580	MSI2	97	91.235	Capra_hircus
ENSHCOG00000000266	msi2a	91	79.452	ENSCPOG00000034042	MSI2	96	86.829	Cavia_porcellus
ENSHCOG00000000266	msi2a	97	84.911	ENSCCAG00000033927	MSI2	97	92.829	Cebus_capucinus
ENSHCOG00000000266	msi2a	93	85.321	ENSCATG00000040879	MSI2	97	92.430	Cercocebus_atys
ENSHCOG00000000266	msi2a	97	85.088	ENSCLAG00000014325	MSI2	97	85.503	Chinchilla_lanigera
ENSHCOG00000000266	msi2a	97	84.911	ENSCSAG00000005633	MSI2	97	92.829	Chlorocebus_sabaeus
ENSHCOG00000000266	msi2a	70	82.000	ENSCHOG00000008660	MSI2	83	82.000	Choloepus_hoffmanni
ENSHCOG00000000266	msi2a	85	93.596	ENSCPBG00000009942	MSI2	89	93.923	Chrysemys_picta_bellii
ENSHCOG00000000266	msi2a	87	48.899	ENSCING00000018579	-	90	47.414	Ciona_intestinalis
ENSHCOG00000000266	msi2a	57	67.290	ENSCSAVG00000010397	-	67	67.943	Ciona_savignyi
ENSHCOG00000000266	msi2a	96	81.702	ENSCANG00000036414	MSI2	91	93.274	Colobus_angolensis_palliatus
ENSHCOG00000000266	msi2a	97	84.366	ENSCGRG00001013330	Msi2	97	92.430	Cricetulus_griseus_chok1gshd
ENSHCOG00000000266	msi2a	91	85.093	ENSCGRG00000003141	Msi2	97	85.535	Cricetulus_griseus_crigri
ENSHCOG00000000266	msi2a	54	77.049	ENSCSEG00000013549	msi2a	100	77.049	Cynoglossus_semilaevis
ENSHCOG00000000266	msi2a	97	73.964	ENSCSEG00000003266	-	97	81.275	Cynoglossus_semilaevis
ENSHCOG00000000266	msi2a	59	87.692	ENSCSEG00000013557	msi2a	79	87.692	Cynoglossus_semilaevis
ENSHCOG00000000266	msi2a	97	97.337	ENSCVAG00000017075	msi2a	97	99.293	Cyprinodon_variegatus
ENSHCOG00000000266	msi2a	100	92.402	ENSDARG00000032614	msi2b	100	96.354	Danio_rerio
ENSHCOG00000000266	msi2a	100	85.012	ENSDARG00000033901	msi2a	100	83.784	Danio_rerio
ENSHCOG00000000266	msi2a	91	84.228	ENSDNOG00000014501	MSI2	97	93.365	Dasypus_novemcinctus
ENSHCOG00000000266	msi2a	76	70.048	ENSDORG00000005394	Msi2	79	84.615	Dipodomys_ordii
ENSHCOG00000000266	msi2a	93	55.162	FBgn0260943	Rbp6	88	65.278	Drosophila_melanogaster
ENSHCOG00000000266	msi2a	63	72.368	ENSETEG00000012450	-	64	72.368	Echinops_telfairi
ENSHCOG00000000266	msi2a	87	63.259	ENSEBUG00000006732	msi2a	75	79.048	Eptatretus_burgeri
ENSHCOG00000000266	msi2a	90	84.950	ENSEASG00005002965	MSI2	95	77.259	Equus_asinus_asinus
ENSHCOG00000000266	msi2a	96	85.588	ENSECAG00000011435	MSI2	97	83.237	Equus_caballus
ENSHCOG00000000266	msi2a	82	71.218	ENSEEUG00000007810	MSI2	94	76.190	Erinaceus_europaeus
ENSHCOG00000000266	msi2a	100	86.957	ENSELUG00000001361	msi2b	100	85.749	Esox_lucius
ENSHCOG00000000266	msi2a	97	89.594	ENSELUG00000011747	msi2a	97	91.235	Esox_lucius
ENSHCOG00000000266	msi2a	97	84.911	ENSFCAG00000041686	MSI2	97	92.829	Felis_catus
ENSHCOG00000000266	msi2a	91	85.358	ENSFDAG00000016118	MSI2	97	85.804	Fukomys_damarensis
ENSHCOG00000000266	msi2a	100	98.526	ENSFHEG00000000084	msi2a	100	98.526	Fundulus_heteroclitus
ENSHCOG00000000266	msi2a	52	96.154	ENSGMOG00000007596	-	100	96.154	Gadus_morhua
ENSHCOG00000000266	msi2a	97	84.211	ENSGALG00000005567	MSI2	97	84.615	Gallus_gallus
ENSHCOG00000000266	msi2a	82	94.231	ENSGAFG00000006974	msi2a	90	99.338	Gambusia_affinis
ENSHCOG00000000266	msi2a	91	88.679	ENSGAGG00000016542	MSI2	97	82.095	Gopherus_agassizii
ENSHCOG00000000266	msi2a	96	81.702	ENSGGOG00000013182	MSI2	91	93.274	Gorilla_gorilla
ENSHCOG00000000266	msi2a	100	98.280	ENSHBUG00000020800	msi2a	100	99.177	Haplochromis_burtoni
ENSHCOG00000000266	msi2a	97	76.023	ENSHGLG00000012444	MSI2	97	76.331	Heterocephalus_glaber_female
ENSHCOG00000000266	msi2a	73	79.803	ENSHGLG00100003744	MSI2	96	80.402	Heterocephalus_glaber_male
ENSHCOG00000000266	msi2a	100	86.978	ENSIPUG00000003732	msi2b	95	95.618	Ictalurus_punctatus
ENSHCOG00000000266	msi2a	100	90.172	ENSIPUG00000021097	msi2a	100	94.650	Ictalurus_punctatus
ENSHCOG00000000266	msi2a	91	79.452	ENSSTOG00000007884	MSI2	96	86.829	Ictidomys_tridecemlineatus
ENSHCOG00000000266	msi2a	73	72.414	ENSJJAG00000006292	-	95	72.414	Jaculus_jaculus
ENSHCOG00000000266	msi2a	100	93.366	ENSKMAG00000009494	msi2a	100	93.366	Kryptolebias_marmoratus
ENSHCOG00000000266	msi2a	95	73.481	ENSLBEG00000026223	-	100	72.376	Labrus_bergylta
ENSHCOG00000000266	msi2a	100	98.280	ENSLBEG00000007061	msi2a	100	98.280	Labrus_bergylta
ENSHCOG00000000266	msi2a	100	88.452	ENSLOCG00000004675	msi2b	100	87.224	Lepisosteus_oculatus
ENSHCOG00000000266	msi2a	96	81.702	ENSMFAG00000003775	MSI2	91	93.274	Macaca_fascicularis
ENSHCOG00000000266	msi2a	96	81.702	ENSMMUG00000002069	MSI2	91	93.274	Macaca_mulatta
ENSHCOG00000000266	msi2a	97	84.911	ENSMNEG00000045275	MSI2	97	92.829	Macaca_nemestrina
ENSHCOG00000000266	msi2a	96	81.702	ENSMLEG00000033888	MSI2	91	93.274	Mandrillus_leucophaeus
ENSHCOG00000000266	msi2a	100	98.039	ENSMAMG00000010503	msi2a	100	99.588	Mastacembelus_armatus
ENSHCOG00000000266	msi2a	100	83.816	ENSMAMG00000002488	-	99	93.377	Mastacembelus_armatus
ENSHCOG00000000266	msi2a	100	98.280	ENSMZEG00005007676	msi2a	100	98.280	Maylandia_zebra
ENSHCOG00000000266	msi2a	97	84.548	ENSMAUG00000003862	Msi2	97	84.956	Mesocricetus_auratus
ENSHCOG00000000266	msi2a	97	84.911	ENSMICG00000013598	-	97	92.829	Microcebus_murinus
ENSHCOG00000000266	msi2a	97	68.437	ENSMICG00000032913	-	96	75.362	Microcebus_murinus
ENSHCOG00000000266	msi2a	97	84.795	ENSMOCG00000005820	Msi2	97	85.207	Microtus_ochrogaster
ENSHCOG00000000266	msi2a	96	86.464	ENSMMOG00000008348	msi2a	85	98.643	Mola_mola
ENSHCOG00000000266	msi2a	73	79.310	ENSMODG00000014790	MSI2	96	79.899	Monodelphis_domestica
ENSHCOG00000000266	msi2a	100	98.693	ENSMALG00000000071	msi2a	100	99.588	Monopterus_albus
ENSHCOG00000000266	msi2a	97	84.795	MGP_CAROLIEiJ_G0016948	Msi2	100	95.575	Mus_caroli
ENSHCOG00000000266	msi2a	97	84.795	ENSMUSG00000069769	Msi2	100	95.575	Mus_musculus
ENSHCOG00000000266	msi2a	97	84.795	MGP_PahariEiJ_G0018079	Msi2	100	95.575	Mus_pahari
ENSHCOG00000000266	msi2a	97	84.795	MGP_SPRETEiJ_G0017795	Msi2	100	95.575	Mus_spretus
ENSHCOG00000000266	msi2a	91	85.174	ENSMPUG00000015377	MSI2	94	93.913	Mustela_putorius_furo
ENSHCOG00000000266	msi2a	91	84.858	ENSMLUG00000007865	MSI2	94	93.478	Myotis_lucifugus
ENSHCOG00000000266	msi2a	97	84.795	ENSNGAG00000017807	Msi2	97	85.207	Nannospalax_galili
ENSHCOG00000000266	msi2a	100	93.612	ENSNBRG00000014596	msi2a	100	93.612	Neolamprologus_brichardi
ENSHCOG00000000266	msi2a	91	84.691	ENSNLEG00000008059	MSI2	95	92.823	Nomascus_leucogenys
ENSHCOG00000000266	msi2a	63	83.553	ENSOPRG00000000872	-	64	83.553	Ochotona_princeps
ENSHCOG00000000266	msi2a	97	85.088	ENSODEG00000011974	MSI2	97	85.503	Octodon_degus
ENSHCOG00000000266	msi2a	54	99.338	ENSONIG00000001972	msi2a	84	99.338	Oreochromis_niloticus
ENSHCOG00000000266	msi2a	94	88.448	ENSOANG00000005667	MSI2	99	77.541	Ornithorhynchus_anatinus
ENSHCOG00000000266	msi2a	91	85.174	ENSOCUG00000010440	MSI2	94	93.913	Oryctolagus_cuniculus
ENSHCOG00000000266	msi2a	100	93.857	ENSORLG00000009671	msi2a	99	99.588	Oryzias_latipes
ENSHCOG00000000266	msi2a	100	98.526	ENSORLG00020021556	msi2a	100	99.588	Oryzias_latipes_hni
ENSHCOG00000000266	msi2a	100	93.857	ENSORLG00015004592	msi2a	99	99.588	Oryzias_latipes_hsok
ENSHCOG00000000266	msi2a	100	93.857	ENSOMEG00000000146	msi2a	100	99.588	Oryzias_melastigma
ENSHCOG00000000266	msi2a	91	81.703	ENSOGAG00000005621	MSI2	97	89.130	Otolemur_garnettii
ENSHCOG00000000266	msi2a	91	85.312	ENSPPAG00000037697	MSI2	91	93.274	Pan_paniscus
ENSHCOG00000000266	msi2a	91	85.174	ENSPPRG00000001848	MSI2	91	93.913	Panthera_pardus
ENSHCOG00000000266	msi2a	68	75.105	ENSPTIG00000021873	-	90	75.105	Panthera_tigris_altaica
ENSHCOG00000000266	msi2a	91	84.691	ENSPTIG00000021678	MSI2	93	85.149	Panthera_tigris_altaica
ENSHCOG00000000266	msi2a	96	81.702	ENSPTRG00000009437	MSI2	91	93.274	Pan_troglodytes
ENSHCOG00000000266	msi2a	97	84.911	ENSPANG00000022319	MSI2	97	92.829	Papio_anubis
ENSHCOG00000000266	msi2a	95	83.784	ENSPKIG00000007038	-	96	92.593	Paramormyrops_kingsleyae
ENSHCOG00000000266	msi2a	91	94.318	ENSPSIG00000008618	MSI2	100	80.471	Pelodiscus_sinensis
ENSHCOG00000000266	msi2a	97	86.686	ENSPMGG00000005888	msi2a	97	93.227	Periophthalmus_magnuspinnatus
ENSHCOG00000000266	msi2a	96	84.789	ENSPCIG00000006063	MSI2	97	83.815	Phascolarctos_cinereus
ENSHCOG00000000266	msi2a	53	98.095	ENSPFOG00000019337	MSI2	92	98.095	Poecilia_formosa
ENSHCOG00000000266	msi2a	54	99.265	ENSPLAG00000000436	msi2a	72	99.265	Poecilia_latipinna
ENSHCOG00000000266	msi2a	54	88.235	ENSPMEG00000013247	msi2a	75	88.235	Poecilia_mexicana
ENSHCOG00000000266	msi2a	100	98.280	ENSPREG00000000881	msi2a	100	98.280	Poecilia_reticulata
ENSHCOG00000000266	msi2a	91	79.839	ENSPPYG00000008244	-	96	89.441	Pongo_abelii
ENSHCOG00000000266	msi2a	74	84.615	ENSPCAG00000010552	MSI2	95	84.615	Procavia_capensis
ENSHCOG00000000266	msi2a	91	76.898	ENSPVAG00000017053	MSI2	97	83.333	Pteropus_vampyrus
ENSHCOG00000000266	msi2a	100	98.280	ENSPNYG00000018393	msi2a	100	99.177	Pundamilia_nyererei
ENSHCOG00000000266	msi2a	100	87.500	ENSPNAG00000000844	msi2b	97	90.040	Pygocentrus_nattereri
ENSHCOG00000000266	msi2a	100	88.452	ENSPNAG00000014957	msi2a	97	95.618	Pygocentrus_nattereri
ENSHCOG00000000266	msi2a	91	83.681	ENSRNOG00000025338	Msi2	97	93.035	Rattus_norvegicus
ENSHCOG00000000266	msi2a	91	85.312	ENSSBOG00000026425	MSI2	91	93.274	Saimiri_boliviensis_boliviensis
ENSHCOG00000000266	msi2a	91	85.312	ENSSHAG00000008672	MSI2	97	85.759	Sarcophilus_harrisii
ENSHCOG00000000266	msi2a	91	82.019	ENSSFOG00015021687	-	97	92.793	Scleropages_formosus
ENSHCOG00000000266	msi2a	100	68.852	ENSSFOG00015012168	msi2b	100	68.298	Scleropages_formosus
ENSHCOG00000000266	msi2a	100	98.526	ENSSMAG00000018484	msi2a	100	99.588	Scophthalmus_maximus
ENSHCOG00000000266	msi2a	97	80.178	ENSSDUG00000021968	-	99	93.377	Seriola_dumerili
ENSHCOG00000000266	msi2a	100	98.280	ENSSDUG00000014507	msi2a	100	99.588	Seriola_dumerili
ENSHCOG00000000266	msi2a	100	98.280	ENSSLDG00000017172	msi2a	99	99.588	Seriola_lalandi_dorsalis
ENSHCOG00000000266	msi2a	54	91.772	ENSSPUG00000000913	-	94	91.772	Sphenodon_punctatus
ENSHCOG00000000266	msi2a	100	98.280	ENSSPAG00000017793	msi2a	100	98.280	Stegastes_partitus
ENSHCOG00000000266	msi2a	97	84.911	ENSSSCG00000038505	MSI2	97	92.829	Sus_scrofa
ENSHCOG00000000266	msi2a	73	79.803	ENSTGUG00000008452	MSI2	96	80.402	Taeniopygia_guttata
ENSHCOG00000000266	msi2a	97	97.208	ENSTRUG00000021248	msi2a	96	96.725	Takifugu_rubripes
ENSHCOG00000000266	msi2a	69	77.686	ENSTBEG00000001241	MSI2	73	77.686	Tupaia_belangeri
ENSHCOG00000000266	msi2a	91	75.000	ENSTTRG00000002189	MSI2	91	94.737	Tursiops_truncatus
ENSHCOG00000000266	msi2a	91	85.174	ENSUAMG00000000700	MSI2	96	94.144	Ursus_americanus
ENSHCOG00000000266	msi2a	89	78.092	ENSUMAG00000000505	MSI2	95	93.264	Ursus_maritimus
ENSHCOG00000000266	msi2a	52	81.319	ENSVPAG00000006837	-	62	81.319	Vicugna_pacos
ENSHCOG00000000266	msi2a	97	85.088	ENSVVUG00000011783	MSI2	98	91.964	Vulpes_vulpes
ENSHCOG00000000266	msi2a	100	92.629	ENSXCOG00000006113	msi2a	100	92.629	Xiphophorus_couchianus
ENSHCOG00000000266	msi2a	100	98.526	ENSXMAG00000000608	msi2a	100	98.526	Xiphophorus_maculatus