EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000000378 (Gene tree)
Gene ID
109518865
Gene Symbol
-
Alias
-
Full Name
poly(U)-binding-splicing factor PUF60-like
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Minus strand
Length
4082 bases
Position
chrKV880057.1:361623-365704
Accession
109518865
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000010465RRM_1PF00076.222.3e-4112
ENSHCOP00000010465RRM_1PF00076.222.3e-4122
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000026205-2173XM_019874980ENSHCOP00000010465479 (aa)XP_019730539UPI00094EC954
Gene Model
Click here to download ENSHCOG00000000378's gene model file
Pathways
Pathway IDPathway NameSource
hcq03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000000378's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000000378-9963.091ENSHCOG00000015541puf60b9866.095
ENSHCOG00000000378-7740.000ENSHCOG00000014668-6540.541
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000000378-9964.850ENSG00000179950PUF609866.601Homo_sapiens
ENSHCOG00000000378-9966.478ENSAPOG00000001713puf60b9668.775Acanthochromis_polyacanthus
ENSHCOG00000000378-9965.085ENSAMEG00000006406PUF609166.865Ailuropoda_melanoleuca
ENSHCOG00000000378-9964.706ENSACIG00000003263-9867.194Amphilophus_citrinellus
ENSHCOG00000000378-9966.163ENSACIG00000021705puf60b9867.255Amphilophus_citrinellus
ENSHCOG00000000378-9966.541ENSAOCG00000005395puf60b9868.775Amphiprion_ocellaris
ENSHCOG00000000378-9970.019ENSAOCG00000015558-9673.108Amphiprion_ocellaris
ENSHCOG00000000378-9967.248ENSAPEG00000001836-9869.777Amphiprion_percula
ENSHCOG00000000378-9962.642ENSAPEG00000011923puf60b9664.752Amphiprion_percula
ENSHCOG00000000378-9966.667ENSATEG00000001730puf60b9667.843Anabas_testudineus
ENSHCOG00000000378-9973.563ENSATEG00000006303-9674.451Anabas_testudineus
ENSHCOG00000000378-9965.414ENSAPLG00000010150PUF609767.387Anas_platyrhynchos
ENSHCOG00000000378-9964.860ENSACAG00000001645PUF609466.797Anolis_carolinensis
ENSHCOG00000000378-9965.038ENSANAG00000018626PUF609866.798Aotus_nancymaae
ENSHCOG00000000378-9966.163ENSACLG00000004462puf60b9867.255Astatotilapia_calliptera
ENSHCOG00000000378-9965.779ENSAMXG00000041030puf60b9867.921Astyanax_mexicanus
ENSHCOG00000000378-9966.729ENSAMXG00000036570puf60a9866.541Astyanax_mexicanus
ENSHCOG00000000378-9965.226ENSBTAG00000037493PUF609766.798Bos_taurus
ENSHCOG00000000378-8846.939WBGene00004389rnp-68146.104Caenorhabditis_elegans
ENSHCOG00000000378-9964.850ENSCJAG00000021485PUF609666.601Callithrix_jacchus
ENSHCOG00000000378-9964.850ENSCAFG00000001400PUF609166.601Canis_familiaris
ENSHCOG00000000378-9965.038ENSCAFG00020018754PUF609666.798Canis_lupus_dingo
ENSHCOG00000000378-9965.226ENSCHIG00000001618PUF608466.798Capra_hircus
ENSHCOG00000000378-9965.038ENSTSYG00000011912PUF609866.798Carlito_syrichta
ENSHCOG00000000378-9961.007ENSCPOG00000014613PUF609162.573Cavia_porcellus
ENSHCOG00000000378-9964.850ENSCCAG00000007744PUF609666.667Cebus_capucinus
ENSHCOG00000000378-9964.850ENSCATG00000035405PUF609666.601Cercocebus_atys
ENSHCOG00000000378-9965.038ENSCLAG00000009154PUF609066.798Chinchilla_lanigera
ENSHCOG00000000378-9964.850ENSCSAG00000008878PUF609866.601Chlorocebus_sabaeus
ENSHCOG00000000378-9965.038ENSCPBG00000005595PUF609567.191Chrysemys_picta_bellii
ENSHCOG00000000378-6451.312ENSCING00000002156-8853.097Ciona_intestinalis
ENSHCOG00000000378-9446.817ENSCING00000008436-9547.095Ciona_intestinalis
ENSHCOG00000000378-9446.072ENSCSAVG00000004765-9746.154Ciona_savignyi
ENSHCOG00000000378-7963.265ENSCSAVG00000001385-9947.481Ciona_savignyi
ENSHCOG00000000378-7271.768ENSCANG00000041843PUF608872.554Colobus_angolensis_palliatus
ENSHCOG00000000378-9965.226ENSCGRG00001017442Puf609066.277Cricetulus_griseus_chok1gshd
ENSHCOG00000000378-9965.226ENSCGRG00000003717Puf609066.277Cricetulus_griseus_crigri
ENSHCOG00000000378-9967.179ENSCSEG00000014845-8769.505Cynoglossus_semilaevis
ENSHCOG00000000378-9966.478ENSCSEG00000019887puf60b9067.647Cynoglossus_semilaevis
ENSHCOG00000000378-9965.595ENSCVAG00000009386puf60b9866.863Cyprinodon_variegatus
ENSHCOG00000000378-8571.772ENSCVAG00000001560-9674.393Cyprinodon_variegatus
ENSHCOG00000000378-9965.602ENSDARG00000001241puf60b9681.008Danio_rerio
ENSHCOG00000000378-9966.604ENSDARG00000032175puf60a9684.305Danio_rerio
ENSHCOG00000000378-9752.199ENSDNOG00000043278PUF609053.438Dasypus_novemcinctus
ENSHCOG00000000378-9965.038ENSDORG00000004585Puf609266.798Dipodomys_ordii
ENSHCOG00000000378-7361.355FBgn0028577hfp7354.455Drosophila_melanogaster
ENSHCOG00000000378-9951.795ENSEBUG00000014291puf60b8153.534Eptatretus_burgeri
ENSHCOG00000000378-9459.756ENSEBUG00000005470-8859.796Eptatretus_burgeri
ENSHCOG00000000378-9965.038ENSEASG00005009695PUF609666.798Equus_asinus_asinus
ENSHCOG00000000378-10064.564ENSECAG00000024681PUF609466.798Equus_caballus
ENSHCOG00000000378-9967.790ENSELUG00000018443-9867.913Esox_lucius
ENSHCOG00000000378-9965.736ENSELUG00000006507puf60b9864.432Esox_lucius
ENSHCOG00000000378-9965.226ENSFCAG00000001045PUF609866.798Felis_catus
ENSHCOG00000000378-9957.331ENSFALG00000001136PUF609659.332Ficedula_albicollis
ENSHCOG00000000378-9965.038ENSFDAG00000017177PUF609066.798Fukomys_damarensis
ENSHCOG00000000378-9270.935ENSFHEG00000021687PUF6010073.695Fundulus_heteroclitus
ENSHCOG00000000378-9966.163ENSFHEG00000020046puf60b9867.451Fundulus_heteroclitus
ENSHCOG00000000378-9954.323ENSGMOG00000006392puf60b9754.971Gadus_morhua
ENSHCOG00000000378-6872.753ENSGALG00000039901PUF609275.074Gallus_gallus
ENSHCOG00000000378-9973.108ENSGAFG00000004334-9974.409Gambusia_affinis
ENSHCOG00000000378-9966.163ENSGAFG00000021040puf60b9867.451Gambusia_affinis
ENSHCOG00000000378-9966.863ENSGACG00000001484-9870.186Gasterosteus_aculeatus
ENSHCOG00000000378-9955.179ENSGACG00000004717puf60b9655.882Gasterosteus_aculeatus
ENSHCOG00000000378-9965.038ENSGAGG00000013289PUF608966.472Gopherus_agassizii
ENSHCOG00000000378-9964.850ENSGGOG00000004646PUF609666.601Gorilla_gorilla
ENSHCOG00000000378-9966.163ENSHBUG00000015118puf60b9867.255Haplochromis_burtoni
ENSHCOG00000000378-9970.455ENSHBUG00000009634-9673.360Haplochromis_burtoni
ENSHCOG00000000378-9965.038ENSHGLG00000006111PUF609066.798Heterocephalus_glaber_female
ENSHCOG00000000378-9965.038ENSHGLG00100012362PUF609066.798Heterocephalus_glaber_male
ENSHCOG00000000378-9965.677ENSIPUG00000004660puf60b9866.859Ictalurus_punctatus
ENSHCOG00000000378-9966.478ENSIPUG00000002453puf60a9869.094Ictalurus_punctatus
ENSHCOG00000000378-9965.038ENSSTOG00000025037PUF609166.798Ictidomys_tridecemlineatus
ENSHCOG00000000378-9965.226ENSJJAG00000001076Puf609066.798Jaculus_jaculus
ENSHCOG00000000378-9968.511ENSKMAG00000010106-9770.459Kryptolebias_marmoratus
ENSHCOG00000000378-9966.163ENSKMAG00000016745puf60b9867.451Kryptolebias_marmoratus
ENSHCOG00000000378-9967.532ENSLBEG00000012505puf60b9967.780Labrus_bergylta
ENSHCOG00000000378-5573.810ENSLACG00000005456PUF608073.810Latimeria_chalumnae
ENSHCOG00000000378-9967.797ENSLOCG00000010106puf60b9669.020Lepisosteus_oculatus
ENSHCOG00000000378-9964.098ENSLAFG00000022929PUF609166.012Loxodonta_africana
ENSHCOG00000000378-9964.850ENSMFAG00000043373PUF609666.601Macaca_fascicularis
ENSHCOG00000000378-9964.850ENSMMUG00000013558PUF609666.601Macaca_mulatta
ENSHCOG00000000378-9964.850ENSMNEG00000031099PUF609666.601Macaca_nemestrina
ENSHCOG00000000378-9964.850ENSMLEG00000040009PUF609866.601Mandrillus_leucophaeus
ENSHCOG00000000378-9966.478ENSMAMG00000010394puf60b9866.923Mastacembelus_armatus
ENSHCOG00000000378-9973.231ENSMAMG00000019476-9674.502Mastacembelus_armatus
ENSHCOG00000000378-9966.163ENSMZEG00005018515puf60b9867.255Maylandia_zebra
ENSHCOG00000000378-9970.265ENSMZEG00005019425-9673.161Maylandia_zebra
ENSHCOG00000000378-9965.414ENSMGAG00000013070PUF609275.148Meleagris_gallopavo
ENSHCOG00000000378-7172.312ENSMAUG00000014267-8674.221Mesocricetus_auratus
ENSHCOG00000000378-9256.148ENSMAUG00000018549-9556.442Mesocricetus_auratus
ENSHCOG00000000378-9965.038ENSMICG00000012226PUF609666.798Microcebus_murinus
ENSHCOG00000000378-9965.226ENSMOCG00000018780Puf609166.798Microtus_ochrogaster
ENSHCOG00000000378-9964.844ENSMMOG00000018059-9974.092Mola_mola
ENSHCOG00000000378-9966.541ENSMMOG00000004217puf60b9867.647Mola_mola
ENSHCOG00000000378-9965.038ENSMODG00000009161PUF609266.798Monodelphis_domestica
ENSHCOG00000000378-9963.584ENSMALG00000006797puf60b9664.859Monopterus_albus
ENSHCOG00000000378-9973.614ENSMALG00000000200-9675.100Monopterus_albus
ENSHCOG00000000378-9965.414MGP_CAROLIEiJ_G0019910Puf609066.994Mus_caroli
ENSHCOG00000000378-9965.414ENSMUSG00000002524Puf609066.994Mus_musculus
ENSHCOG00000000378-9965.414MGP_PahariEiJ_G0019920Puf609066.994Mus_pahari
ENSHCOG00000000378-9965.414MGP_SPRETEiJ_G0020812Puf609066.994Mus_spretus
ENSHCOG00000000378-9965.038ENSMPUG00000008137PUF609066.798Mustela_putorius_furo
ENSHCOG00000000378-9961.770ENSMLUG00000013032-9663.583Myotis_lucifugus
ENSHCOG00000000378-9965.472ENSMLUG00000000238-9167.061Myotis_lucifugus
ENSHCOG00000000378-9965.226ENSNGAG00000000712Puf609866.798Nannospalax_galili
ENSHCOG00000000378-9970.778ENSNBRG00000017223-9673.307Neolamprologus_brichardi
ENSHCOG00000000378-7274.124ENSNBRG00000013047puf60b9864.626Neolamprologus_brichardi
ENSHCOG00000000378-9964.850ENSNLEG00000002156PUF609666.601Nomascus_leucogenys
ENSHCOG00000000378-7980.139ENSOPRG00000002147PUF607182.246Ochotona_princeps
ENSHCOG00000000378-9449.592ENSODEG00000015513-9550.103Octodon_degus
ENSHCOG00000000378-7473.011ENSODEG00000014024-8675.375Octodon_degus
ENSHCOG00000000378-9970.455ENSONIG00000014030-9673.161Oreochromis_niloticus
ENSHCOG00000000378-9966.102ENSONIG00000006247puf60b9667.255Oreochromis_niloticus
ENSHCOG00000000378-9658.502ENSOANG00000006962PUF609560.510Ornithorhynchus_anatinus
ENSHCOG00000000378-9969.943ENSORLG00000028655-9771.287Oryzias_latipes
ENSHCOG00000000378-9966.541ENSORLG00000012279puf60b9868.577Oryzias_latipes
ENSHCOG00000000378-9966.541ENSORLG00020007333puf609868.577Oryzias_latipes_hni
ENSHCOG00000000378-9970.532ENSORLG00020018144-9572.056Oryzias_latipes_hni
ENSHCOG00000000378-9966.290ENSORLG00015007718puf60b9868.307Oryzias_latipes_hsok
ENSHCOG00000000378-9970.532ENSORLG00015016833-9572.056Oryzias_latipes_hsok
ENSHCOG00000000378-9970.667ENSOMEG00000022185-9572.400Oryzias_melastigma
ENSHCOG00000000378-9966.341ENSOMEG00000001643puf60b9969.102Oryzias_melastigma
ENSHCOG00000000378-9965.038ENSOGAG00000006259PUF609166.798Otolemur_garnettii
ENSHCOG00000000378-9963.429ENSOARG00000016235PUF609666.467Ovis_aries
ENSHCOG00000000378-9964.850ENSPPAG00000029933PUF609666.601Pan_paniscus
ENSHCOG00000000378-9965.226ENSPPRG00000003257PUF609866.798Panthera_pardus
ENSHCOG00000000378-9964.353ENSPTIG00000009795PUF609665.490Panthera_tigris_altaica
ENSHCOG00000000378-9964.850ENSPTRG00000043963-9666.601Pan_troglodytes
ENSHCOG00000000378-9964.850ENSPTRG00000020670PUF609666.601Pan_troglodytes
ENSHCOG00000000378-9964.850ENSPANG00000021936PUF609666.601Papio_anubis
ENSHCOG00000000378-9967.235ENSPKIG00000012204puf60b9869.505Paramormyrops_kingsleyae
ENSHCOG00000000378-9967.477ENSPKIG00000004295puf60a9778.354Paramormyrops_kingsleyae
ENSHCOG00000000378-9965.038ENSPSIG00000004679PUF609666.472Pelodiscus_sinensis
ENSHCOG00000000378-9965.543ENSPMGG00000013444puf60b9866.667Periophthalmus_magnuspinnatus
ENSHCOG00000000378-9965.226ENSPEMG00000008820Puf609066.798Peromyscus_maniculatus_bairdii
ENSHCOG00000000378-9965.038ENSPCIG00000020270PUF609666.798Phascolarctos_cinereus
ENSHCOG00000000378-9966.102ENSPFOG00000019217puf60b9665.422Poecilia_formosa
ENSHCOG00000000378-9971.567ENSPFOG00000011118-9573.185Poecilia_formosa
ENSHCOG00000000378-9966.163ENSPLAG00000010754puf60b9867.451Poecilia_latipinna
ENSHCOG00000000378-9971.567ENSPLAG00000017025-8872.984Poecilia_latipinna
ENSHCOG00000000378-9966.163ENSPMEG00000000838puf60b9867.451Poecilia_mexicana
ENSHCOG00000000378-9971.760ENSPMEG00000009767-8873.387Poecilia_mexicana
ENSHCOG00000000378-9966.342ENSPREG00000005440puf60b9868.880Poecilia_reticulata
ENSHCOG00000000378-7269.921ENSPPYG00000018951-8470.652Pongo_abelii
ENSHCOG00000000378-7271.768ENSPCAG00000014837PUF608872.826Procavia_capensis
ENSHCOG00000000378-9964.850ENSPCOG00000027981PUF609666.798Propithecus_coquereli
ENSHCOG00000000378-9978.824ENSPVAG00000016167PUF607984.768Pteropus_vampyrus
ENSHCOG00000000378-9970.265ENSPNYG00000004273-9673.161Pundamilia_nyererei
ENSHCOG00000000378-9966.163ENSPNYG00000002556puf60b9867.255Pundamilia_nyererei
ENSHCOG00000000378-9965.753ENSPNAG00000019415puf60b8767.623Pygocentrus_nattereri
ENSHCOG00000000378-10064.366ENSPNAG00000019909puf60a9767.589Pygocentrus_nattereri
ENSHCOG00000000378-9965.414ENSRNOG00000009960Puf609066.994Rattus_norvegicus
ENSHCOG00000000378-9964.850ENSRBIG00000035274PUF609666.601Rhinopithecus_bieti
ENSHCOG00000000378-9964.850ENSRROG00000029360PUF609666.601Rhinopithecus_roxellana
ENSHCOG00000000378-9965.714ENSSBOG00000027089PUF609567.530Saimiri_boliviensis_boliviensis
ENSHCOG00000000378-8765.546ENSSHAG00000006668PUF608767.550Sarcophilus_harrisii
ENSHCOG00000000378-9963.978ENSSFOG00015019371puf60a9868.966Scleropages_formosus
ENSHCOG00000000378-9969.038ENSSFOG00015019619puf60b9970.825Scleropages_formosus
ENSHCOG00000000378-8079.585ENSSMAG00000016381puf60b7281.522Scophthalmus_maximus
ENSHCOG00000000378-9966.341ENSSDUG00000009935puf60b9969.520Seriola_dumerili
ENSHCOG00000000378-9670.955ENSSDUG00000007048-9373.975Seriola_dumerili
ENSHCOG00000000378-9970.363ENSSLDG00000007366-9871.769Seriola_lalandi_dorsalis
ENSHCOG00000000378-9966.667ENSSLDG00000024011puf60b9866.031Seriola_lalandi_dorsalis
ENSHCOG00000000378-6762.857ENSSPUG00000013518PUF609064.955Sphenodon_punctatus
ENSHCOG00000000378-9963.904ENSSPAG00000012144puf60b9866.031Stegastes_partitus
ENSHCOG00000000378-9971.347ENSSPAG00000020285-9874.603Stegastes_partitus
ENSHCOG00000000378-9965.038ENSSSCG00000038800PUF6010062.260Sus_scrofa
ENSHCOG00000000378-9963.894ENSTGUG00000012797-9765.347Taeniopygia_guttata
ENSHCOG00000000378-9966.667ENSTRUG00000005420puf60b9866.731Takifugu_rubripes
ENSHCOG00000000378-9970.646ENSTRUG00000008843-9872.154Takifugu_rubripes
ENSHCOG00000000378-9972.016ENSTNIG00000003069-9774.490Tetraodon_nigroviridis
ENSHCOG00000000378-9966.667ENSTNIG00000013675puf60b9768.577Tetraodon_nigroviridis
ENSHCOG00000000378-7153.509ENSTBEG00000001899-10054.438Tupaia_belangeri
ENSHCOG00000000378-5572.391ENSTBEG00000002751-9972.391Tupaia_belangeri
ENSHCOG00000000378-9964.030ENSTTRG00000017088PUF609866.732Tursiops_truncatus
ENSHCOG00000000378-9965.038ENSUAMG00000024917PUF609666.798Ursus_americanus
ENSHCOG00000000378-9965.458ENSUMAG00000000272PUF609167.331Ursus_maritimus
ENSHCOG00000000378-9965.038ENSVVUG00000022527PUF609866.798Vulpes_vulpes
ENSHCOG00000000378-9964.474ENSXETG00000012469puf609666.405Xenopus_tropicalis
ENSHCOG00000000378-9964.394ENSXCOG00000012355puf60b9865.422Xiphophorus_couchianus
ENSHCOG00000000378-9966.163ENSXMAG00000001862puf60b9867.451Xiphophorus_maculatus
ENSHCOG00000000378-9969.922ENSXMAG00000010507-9671.079Xiphophorus_maculatus

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