EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000000783 (Gene tree)
Gene ID: 109510185
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3177 bases
Position: chrKV880528.1:4420241-4423417
Accession: 109510185
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000012744	SMN	PF06003.12	9.6e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000027052	-	1283	XM_019860328	ENSHCOP00000012744	239 (aa)	XP_019715887	UPI00094E8E14

Gene Model

Click here to download ENSHCOG00000000783's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000000783's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000000783	smndc1	100	75.314	ENSG00000119953	SMNDC1	100	75.314	Homo_sapiens
ENSHCOG00000000783	smndc1	100	84.100	ENSAPOG00000021772	smndc1	100	84.100	Acanthochromis_polyacanthus
ENSHCOG00000000783	smndc1	100	74.895	ENSAMEG00000005251	SMNDC1	100	74.895	Ailuropoda_melanoleuca
ENSHCOG00000000783	smndc1	100	84.937	ENSACIG00000004819	smndc1	100	84.937	Amphilophus_citrinellus
ENSHCOG00000000783	smndc1	100	84.100	ENSAOCG00000017869	smndc1	100	84.100	Amphiprion_ocellaris
ENSHCOG00000000783	smndc1	100	84.100	ENSAPEG00000007752	smndc1	100	84.100	Amphiprion_percula
ENSHCOG00000000783	smndc1	100	84.937	ENSATEG00000006830	smndc1	100	84.937	Anabas_testudineus
ENSHCOG00000000783	smndc1	83	73.367	ENSAPLG00000004322	SMNDC1	100	73.367	Anas_platyrhynchos
ENSHCOG00000000783	smndc1	100	74.477	ENSACAG00000005983	SMNDC1	100	74.477	Anolis_carolinensis
ENSHCOG00000000783	smndc1	100	74.895	ENSANAG00000032875	SMNDC1	100	74.895	Aotus_nancymaae
ENSHCOG00000000783	smndc1	100	84.519	ENSACLG00000016360	smndc1	100	84.519	Astatotilapia_calliptera
ENSHCOG00000000783	smndc1	100	77.824	ENSAMXG00000020310	smndc1	100	77.824	Astyanax_mexicanus
ENSHCOG00000000783	smndc1	100	74.895	ENSBTAG00000000551	SMNDC1	100	74.895	Bos_taurus
ENSHCOG00000000783	smndc1	100	74.895	ENSCJAG00000018624	SMNDC1	100	74.895	Callithrix_jacchus
ENSHCOG00000000783	smndc1	100	74.895	ENSCAFG00000010720	SMNDC1	100	74.895	Canis_familiaris
ENSHCOG00000000783	smndc1	100	74.895	ENSCAFG00020011913	SMNDC1	100	74.895	Canis_lupus_dingo
ENSHCOG00000000783	smndc1	100	74.895	ENSCHIG00000010604	SMNDC1	100	74.895	Capra_hircus
ENSHCOG00000000783	smndc1	100	74.477	ENSTSYG00000026454	SMNDC1	100	74.477	Carlito_syrichta
ENSHCOG00000000783	smndc1	100	61.826	ENSCAPG00000009132	SMNDC1	100	71.782	Cavia_aperea
ENSHCOG00000000783	smndc1	100	75.314	ENSCPOG00000031666	SMNDC1	100	75.314	Cavia_porcellus
ENSHCOG00000000783	smndc1	100	74.895	ENSCCAG00000021793	SMNDC1	100	74.895	Cebus_capucinus
ENSHCOG00000000783	smndc1	100	74.477	ENSCATG00000035910	SMNDC1	100	74.477	Cercocebus_atys
ENSHCOG00000000783	smndc1	100	74.895	ENSCLAG00000002838	SMNDC1	100	74.895	Chinchilla_lanigera
ENSHCOG00000000783	smndc1	100	74.895	ENSCSAG00000005169	SMNDC1	100	74.895	Chlorocebus_sabaeus
ENSHCOG00000000783	smndc1	81	70.103	ENSCHOG00000002936	SMNDC1	100	70.103	Choloepus_hoffmanni
ENSHCOG00000000783	smndc1	100	74.895	ENSCPBG00000012837	SMNDC1	100	74.895	Chrysemys_picta_bellii
ENSHCOG00000000783	smndc1	100	69.038	ENSCANG00000034620	-	100	69.038	Colobus_angolensis_palliatus
ENSHCOG00000000783	smndc1	100	74.895	ENSCANG00000031720	-	100	74.895	Colobus_angolensis_palliatus
ENSHCOG00000000783	smndc1	100	58.577	ENSCANG00000036994	-	100	58.577	Colobus_angolensis_palliatus
ENSHCOG00000000783	smndc1	100	74.477	ENSCGRG00001012973	Smndc1	100	74.477	Cricetulus_griseus_chok1gshd
ENSHCOG00000000783	smndc1	100	74.477	ENSCGRG00000012396	Smndc1	100	74.477	Cricetulus_griseus_crigri
ENSHCOG00000000783	smndc1	100	79.079	ENSCSEG00000015621	smndc1	100	79.079	Cynoglossus_semilaevis
ENSHCOG00000000783	smndc1	100	82.427	ENSCVAG00000020432	smndc1	100	82.427	Cyprinodon_variegatus
ENSHCOG00000000783	smndc1	100	77.824	ENSDARG00000056235	smndc1	100	77.824	Danio_rerio
ENSHCOG00000000783	smndc1	100	74.895	ENSDNOG00000016387	SMNDC1	83	74.895	Dasypus_novemcinctus
ENSHCOG00000000783	smndc1	100	74.895	ENSDORG00000023715	Smndc1	100	74.895	Dipodomys_ordii
ENSHCOG00000000783	smndc1	95	39.200	FBgn0039977	CG17454	98	40.800	Drosophila_melanogaster
ENSHCOG00000000783	smndc1	100	64.463	ENSEBUG00000010929	smndc1	100	64.463	Eptatretus_burgeri
ENSHCOG00000000783	smndc1	100	74.895	ENSEASG00005014930	SMNDC1	100	74.895	Equus_asinus_asinus
ENSHCOG00000000783	smndc1	100	74.895	ENSECAG00000029973	SMNDC1	100	74.895	Equus_caballus
ENSHCOG00000000783	smndc1	83	54.271	ENSEEUG00000013407	-	100	54.774	Erinaceus_europaeus
ENSHCOG00000000783	smndc1	100	80.335	ENSELUG00000000227	smndc1	100	80.335	Esox_lucius
ENSHCOG00000000783	smndc1	100	74.895	ENSFCAG00000027353	SMNDC1	100	74.895	Felis_catus
ENSHCOG00000000783	smndc1	100	74.895	ENSFALG00000002306	SMNDC1	100	74.895	Ficedula_albicollis
ENSHCOG00000000783	smndc1	100	75.732	ENSFDAG00000006468	SMNDC1	100	75.732	Fukomys_damarensis
ENSHCOG00000000783	smndc1	100	83.264	ENSFHEG00000020150	smndc1	100	83.264	Fundulus_heteroclitus
ENSHCOG00000000783	smndc1	100	79.079	ENSGMOG00000016585	smndc1	100	79.079	Gadus_morhua
ENSHCOG00000000783	smndc1	100	74.895	ENSGALG00000008561	SMNDC1	100	74.895	Gallus_gallus
ENSHCOG00000000783	smndc1	100	84.937	ENSGAFG00000011582	smndc1	100	84.937	Gambusia_affinis
ENSHCOG00000000783	smndc1	100	84.100	ENSGACG00000009468	smndc1	100	84.100	Gasterosteus_aculeatus
ENSHCOG00000000783	smndc1	100	74.895	ENSGAGG00000024547	SMNDC1	100	74.895	Gopherus_agassizii
ENSHCOG00000000783	smndc1	100	74.895	ENSGGOG00000010071	SMNDC1	100	74.895	Gorilla_gorilla
ENSHCOG00000000783	smndc1	100	84.519	ENSHBUG00000017596	smndc1	100	84.519	Haplochromis_burtoni
ENSHCOG00000000783	smndc1	100	54.694	ENSHGLG00000001157	-	100	54.472	Heterocephalus_glaber_female
ENSHCOG00000000783	smndc1	100	75.732	ENSHGLG00000013390	-	100	75.732	Heterocephalus_glaber_female
ENSHCOG00000000783	smndc1	100	60.000	ENSHGLG00100004278	-	100	59.274	Heterocephalus_glaber_male
ENSHCOG00000000783	smndc1	100	75.732	ENSHGLG00100004814	-	100	75.732	Heterocephalus_glaber_male
ENSHCOG00000000783	smndc1	100	79.079	ENSIPUG00000004217	smndc1	100	79.079	Ictalurus_punctatus
ENSHCOG00000000783	smndc1	100	74.477	ENSSTOG00000006088	SMNDC1	100	74.477	Ictidomys_tridecemlineatus
ENSHCOG00000000783	smndc1	100	74.895	ENSJJAG00000019974	Smndc1	100	74.895	Jaculus_jaculus
ENSHCOG00000000783	smndc1	100	84.100	ENSKMAG00000020134	smndc1	100	84.100	Kryptolebias_marmoratus
ENSHCOG00000000783	smndc1	100	85.356	ENSLBEG00000004598	smndc1	100	85.356	Labrus_bergylta
ENSHCOG00000000783	smndc1	100	73.640	ENSLACG00000007784	SMNDC1	100	73.640	Latimeria_chalumnae
ENSHCOG00000000783	smndc1	100	79.916	ENSLOCG00000012355	smndc1	100	79.916	Lepisosteus_oculatus
ENSHCOG00000000783	smndc1	100	74.477	ENSLAFG00000014353	SMNDC1	100	74.477	Loxodonta_africana
ENSHCOG00000000783	smndc1	100	63.598	ENSMFAG00000038381	-	100	63.598	Macaca_fascicularis
ENSHCOG00000000783	smndc1	100	74.895	ENSMFAG00000002433	-	100	74.895	Macaca_fascicularis
ENSHCOG00000000783	smndc1	100	63.598	ENSMMUG00000045875	-	100	63.598	Macaca_mulatta
ENSHCOG00000000783	smndc1	100	74.895	ENSMMUG00000007775	SMNDC1	100	74.895	Macaca_mulatta
ENSHCOG00000000783	smndc1	100	74.895	ENSMNEG00000042963	-	100	74.895	Macaca_nemestrina
ENSHCOG00000000783	smndc1	100	66.109	ENSMNEG00000033853	-	100	66.109	Macaca_nemestrina
ENSHCOG00000000783	smndc1	100	70.782	ENSMLEG00000040236	SMNDC1	100	70.417	Mandrillus_leucophaeus
ENSHCOG00000000783	smndc1	90	80.841	ENSMAMG00000018233	smndc1	87	80.841	Mastacembelus_armatus
ENSHCOG00000000783	smndc1	100	84.519	ENSMZEG00005027510	smndc1	100	84.519	Maylandia_zebra
ENSHCOG00000000783	smndc1	84	74.129	ENSMGAG00000010777	SMNDC1	84	74.129	Meleagris_gallopavo
ENSHCOG00000000783	smndc1	99	63.025	ENSMAUG00000005459	-	93	62.605	Mesocricetus_auratus
ENSHCOG00000000783	smndc1	100	74.895	ENSMAUG00000012243	-	100	74.895	Mesocricetus_auratus
ENSHCOG00000000783	smndc1	100	74.477	ENSMICG00000027336	-	100	74.477	Microcebus_murinus
ENSHCOG00000000783	smndc1	100	64.730	ENSMICG00000031640	-	100	64.730	Microcebus_murinus
ENSHCOG00000000783	smndc1	100	74.477	ENSMOCG00000002458	Smndc1	100	74.477	Microtus_ochrogaster
ENSHCOG00000000783	smndc1	100	83.682	ENSMMOG00000008856	smndc1	100	83.682	Mola_mola
ENSHCOG00000000783	smndc1	100	74.895	ENSMODG00000010542	SMNDC1	100	74.895	Monodelphis_domestica
ENSHCOG00000000783	smndc1	100	82.427	ENSMALG00000017598	smndc1	100	82.427	Monopterus_albus
ENSHCOG00000000783	smndc1	100	74.895	MGP_CAROLIEiJ_G0023072	Smndc1	100	74.895	Mus_caroli
ENSHCOG00000000783	smndc1	100	74.895	ENSMUSG00000025024	Smndc1	100	74.895	Mus_musculus
ENSHCOG00000000783	smndc1	100	74.477	MGP_PahariEiJ_G0014560	Smndc1	100	74.477	Mus_pahari
ENSHCOG00000000783	smndc1	100	74.895	MGP_SPRETEiJ_G0023993	Smndc1	100	74.895	Mus_spretus
ENSHCOG00000000783	smndc1	100	74.895	ENSMPUG00000002089	SMNDC1	100	74.895	Mustela_putorius_furo
ENSHCOG00000000783	smndc1	100	74.895	ENSMLUG00000016007	SMNDC1	100	74.895	Myotis_lucifugus
ENSHCOG00000000783	smndc1	100	74.895	ENSNGAG00000006833	Smndc1	100	74.895	Nannospalax_galili
ENSHCOG00000000783	smndc1	100	84.100	ENSNBRG00000017089	smndc1	100	84.100	Neolamprologus_brichardi
ENSHCOG00000000783	smndc1	100	74.895	ENSNLEG00000015471	SMNDC1	100	74.895	Nomascus_leucogenys
ENSHCOG00000000783	smndc1	70	58.084	ENSMEUG00000010120	-	98	52.764	Notamacropus_eugenii
ENSHCOG00000000783	smndc1	100	75.314	ENSOPRG00000015348	SMNDC1	100	75.314	Ochotona_princeps
ENSHCOG00000000783	smndc1	100	54.393	ENSODEG00000007594	-	100	52.720	Octodon_degus
ENSHCOG00000000783	smndc1	100	84.100	ENSONIG00000000434	smndc1	100	84.100	Oreochromis_niloticus
ENSHCOG00000000783	smndc1	100	74.895	ENSOANG00000001598	SMNDC1	100	74.895	Ornithorhynchus_anatinus
ENSHCOG00000000783	smndc1	100	56.067	ENSOCUG00000012274	-	100	58.159	Oryctolagus_cuniculus
ENSHCOG00000000783	smndc1	100	74.895	ENSOCUG00000008145	-	100	74.895	Oryctolagus_cuniculus
ENSHCOG00000000783	smndc1	100	77.824	ENSORLG00000005934	smndc1	95	77.824	Oryzias_latipes
ENSHCOG00000000783	smndc1	100	77.824	ENSORLG00020008796	smndc1	95	77.824	Oryzias_latipes_hni
ENSHCOG00000000783	smndc1	100	77.406	ENSORLG00015013666	smndc1	100	77.406	Oryzias_latipes_hsok
ENSHCOG00000000783	smndc1	100	76.987	ENSOMEG00000007590	smndc1	100	76.987	Oryzias_melastigma
ENSHCOG00000000783	smndc1	100	74.895	ENSOGAG00000000571	SMNDC1	100	74.895	Otolemur_garnettii
ENSHCOG00000000783	smndc1	100	74.895	ENSOARG00000009500	SMNDC1	100	74.895	Ovis_aries
ENSHCOG00000000783	smndc1	100	74.895	ENSPPAG00000027815	SMNDC1	100	74.895	Pan_paniscus
ENSHCOG00000000783	smndc1	100	74.895	ENSPPRG00000013749	SMNDC1	100	74.895	Panthera_pardus
ENSHCOG00000000783	smndc1	100	74.895	ENSPTIG00000011451	SMNDC1	100	74.895	Panthera_tigris_altaica
ENSHCOG00000000783	smndc1	100	74.895	ENSPTRG00000002937	SMNDC1	100	74.895	Pan_troglodytes
ENSHCOG00000000783	smndc1	100	70.711	ENSPANG00000031346	-	100	70.711	Papio_anubis
ENSHCOG00000000783	smndc1	100	74.895	ENSPANG00000020805	-	100	74.895	Papio_anubis
ENSHCOG00000000783	smndc1	100	79.916	ENSPKIG00000017164	smndc1	100	79.916	Paramormyrops_kingsleyae
ENSHCOG00000000783	smndc1	100	75.314	ENSPSIG00000012257	SMNDC1	100	75.314	Pelodiscus_sinensis
ENSHCOG00000000783	smndc1	100	79.498	ENSPMGG00000015651	smndc1	100	79.498	Periophthalmus_magnuspinnatus
ENSHCOG00000000783	smndc1	100	74.895	ENSPEMG00000022058	Smndc1	100	74.895	Peromyscus_maniculatus_bairdii
ENSHCOG00000000783	smndc1	100	63.115	ENSPMAG00000007705	smndc1	100	63.485	Petromyzon_marinus
ENSHCOG00000000783	smndc1	95	56.388	ENSPCIG00000009693	-	98	56.388	Phascolarctos_cinereus
ENSHCOG00000000783	smndc1	100	74.895	ENSPCIG00000018419	SMNDC1	100	74.895	Phascolarctos_cinereus
ENSHCOG00000000783	smndc1	100	84.100	ENSPFOG00000017113	smndc1	100	84.100	Poecilia_formosa
ENSHCOG00000000783	smndc1	100	84.100	ENSPLAG00000010372	smndc1	100	84.100	Poecilia_latipinna
ENSHCOG00000000783	smndc1	100	84.937	ENSPMEG00000012288	smndc1	100	84.937	Poecilia_mexicana
ENSHCOG00000000783	smndc1	100	82.845	ENSPREG00000012279	smndc1	100	82.845	Poecilia_reticulata
ENSHCOG00000000783	smndc1	100	74.895	ENSPPYG00000002643	SMNDC1	100	74.895	Pongo_abelii
ENSHCOG00000000783	smndc1	81	70.619	ENSPCAG00000016183	SMNDC1	100	70.619	Procavia_capensis
ENSHCOG00000000783	smndc1	100	74.477	ENSPCOG00000024343	SMNDC1	100	74.477	Propithecus_coquereli
ENSHCOG00000000783	smndc1	77	89.583	ENSPVAG00000004368	SMNDC1	100	60.669	Pteropus_vampyrus
ENSHCOG00000000783	smndc1	83	82.915	ENSPNYG00000024093	smndc1	86	82.915	Pundamilia_nyererei
ENSHCOG00000000783	smndc1	100	75.732	ENSPNAG00000025285	smndc1	100	75.732	Pygocentrus_nattereri
ENSHCOG00000000783	smndc1	100	74.895	ENSRNOG00000014833	Smndc1	100	74.895	Rattus_norvegicus
ENSHCOG00000000783	smndc1	100	74.477	ENSRBIG00000000224	-	100	74.477	Rhinopithecus_bieti
ENSHCOG00000000783	smndc1	100	61.506	ENSRBIG00000032452	-	100	61.506	Rhinopithecus_bieti
ENSHCOG00000000783	smndc1	100	74.895	ENSRROG00000044992	-	100	74.895	Rhinopithecus_roxellana
ENSHCOG00000000783	smndc1	100	61.506	ENSRROG00000039125	-	100	61.506	Rhinopithecus_roxellana
ENSHCOG00000000783	smndc1	100	74.895	ENSSBOG00000026789	SMNDC1	100	74.895	Saimiri_boliviensis_boliviensis
ENSHCOG00000000783	smndc1	100	74.895	ENSSHAG00000015189	SMNDC1	100	74.895	Sarcophilus_harrisii
ENSHCOG00000000783	smndc1	100	78.243	ENSSFOG00015008311	smndc1	100	78.243	Scleropages_formosus
ENSHCOG00000000783	smndc1	100	84.937	ENSSMAG00000020118	smndc1	100	84.937	Scophthalmus_maximus
ENSHCOG00000000783	smndc1	100	84.519	ENSSDUG00000015330	smndc1	100	84.519	Seriola_dumerili
ENSHCOG00000000783	smndc1	100	84.100	ENSSLDG00000017325	smndc1	100	84.100	Seriola_lalandi_dorsalis
ENSHCOG00000000783	smndc1	100	74.895	ENSSARG00000006063	SMNDC1	100	74.895	Sorex_araneus
ENSHCOG00000000783	smndc1	100	74.059	ENSSPUG00000004574	SMNDC1	100	74.059	Sphenodon_punctatus
ENSHCOG00000000783	smndc1	100	83.682	ENSSPAG00000000338	smndc1	100	83.682	Stegastes_partitus
ENSHCOG00000000783	smndc1	100	75.314	ENSSSCG00000030507	SMNDC1	100	75.314	Sus_scrofa
ENSHCOG00000000783	smndc1	100	74.895	ENSTGUG00000010599	SMNDC1	100	74.895	Taeniopygia_guttata
ENSHCOG00000000783	smndc1	100	81.172	ENSTRUG00000023281	smndc1	100	81.172	Takifugu_rubripes
ENSHCOG00000000783	smndc1	100	80.335	ENSTNIG00000013331	smndc1	100	80.335	Tetraodon_nigroviridis
ENSHCOG00000000783	smndc1	100	74.895	ENSTBEG00000014337	SMNDC1	100	74.895	Tupaia_belangeri
ENSHCOG00000000783	smndc1	100	74.895	ENSUAMG00000008142	SMNDC1	100	74.895	Ursus_americanus
ENSHCOG00000000783	smndc1	100	74.895	ENSUMAG00000023722	SMNDC1	100	74.895	Ursus_maritimus
ENSHCOG00000000783	smndc1	83	73.367	ENSVPAG00000003402	SMNDC1	100	73.367	Vicugna_pacos
ENSHCOG00000000783	smndc1	100	74.895	ENSVVUG00000007820	SMNDC1	100	74.895	Vulpes_vulpes
ENSHCOG00000000783	smndc1	57	63.235	ENSXETG00000015415	SMNDC1	96	63.235	Xenopus_tropicalis
ENSHCOG00000000783	smndc1	100	84.100	ENSXCOG00000009159	smndc1	100	84.100	Xiphophorus_couchianus
ENSHCOG00000000783	smndc1	100	84.519	ENSXMAG00000012755	smndc1	100	84.519	Xiphophorus_maculatus