EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000000906 (Gene tree)
Gene ID: 109532430
Gene Symbol: polr2eb
Alias: RPABC1|RPB5|XAP4|hRPB25|hsRPB5
Full Name: RNA polymerase II subunit E
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 2427 bases
Position: chrKV880451.1:2968495-2970921
Accession: 109532430
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000146	RNA_pol_Rpb5_N	PF03871.14	1.1e-34	1	1
ENSHCOP00000017250	RNA_pol_Rpb5_N	PF03871.14	1.4e-34	1	1
ENSHCOP00000017250	RNA_pol_Rpb5_C	PF01191.19	9.2e-35	1	1
ENSHCOP00000000146	RNA_pol_Rpb5_C	PF01191.19	1.3e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000014261	-	937	XM_019897326	ENSHCOP00000017250	210 (aa)	XP_019752885	UPI00094E142D
ENSHCOT00000014263	-	552	-	ENSHCOP00000000146	183 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000000906's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03020	RNA polymerase	KEGG
hcq04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000000906's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000000906	polr2eb	53	99.107	ENSHCOG00000012099	-	88	99.107

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000000906	polr2eb	100	93.810	ENSG00000099817	POLR2E	100	93.810	Homo_sapiens
ENSHCOG00000000906	polr2eb	100	98.571	ENSAPOG00000002935	polr2eb	100	98.571	Acanthochromis_polyacanthus
ENSHCOG00000000906	polr2eb	100	94.286	ENSAMEG00000003159	POLR2E	100	94.286	Ailuropoda_melanoleuca
ENSHCOG00000000906	polr2eb	100	97.814	ENSACIG00000024371	polr2eb	100	97.814	Amphilophus_citrinellus
ENSHCOG00000000906	polr2eb	100	98.571	ENSAOCG00000018166	polr2eb	100	98.571	Amphiprion_ocellaris
ENSHCOG00000000906	polr2eb	100	98.571	ENSAPEG00000009000	polr2eb	100	98.571	Amphiprion_percula
ENSHCOG00000000906	polr2eb	100	98.571	ENSATEG00000023760	polr2eb	100	98.571	Anabas_testudineus
ENSHCOG00000000906	polr2eb	100	94.286	ENSANAG00000038488	POLR2E	100	94.286	Aotus_nancymaae
ENSHCOG00000000906	polr2eb	100	98.095	ENSACLG00000005254	polr2eb	100	98.095	Astatotilapia_calliptera
ENSHCOG00000000906	polr2eb	100	98.095	ENSAMXG00000018915	POLR2E	100	98.095	Astyanax_mexicanus
ENSHCOG00000000906	polr2eb	100	94.286	ENSBTAG00000020776	POLR2E	100	94.286	Bos_taurus
ENSHCOG00000000906	polr2eb	99	78.846	WBGene00019246	rpb-5	99	78.846	Caenorhabditis_elegans
ENSHCOG00000000906	polr2eb	67	90.000	ENSCJAG00000007666	-	77	90.000	Callithrix_jacchus
ENSHCOG00000000906	polr2eb	100	91.429	ENSCAFG00000019546	POLR2E	100	91.429	Canis_familiaris
ENSHCOG00000000906	polr2eb	100	94.286	ENSCAFG00020017111	POLR2E	100	94.286	Canis_lupus_dingo
ENSHCOG00000000906	polr2eb	100	94.286	ENSCHIG00000014151	POLR2E	100	94.286	Capra_hircus
ENSHCOG00000000906	polr2eb	100	77.209	ENSTSYG00000026377	POLR2E	100	77.209	Carlito_syrichta
ENSHCOG00000000906	polr2eb	91	93.750	ENSCAPG00000010843	POLR2E	93	93.750	Cavia_aperea
ENSHCOG00000000906	polr2eb	100	94.286	ENSCPOG00000001542	POLR2E	100	94.286	Cavia_porcellus
ENSHCOG00000000906	polr2eb	100	94.286	ENSCCAG00000025658	POLR2E	100	94.286	Cebus_capucinus
ENSHCOG00000000906	polr2eb	100	94.286	ENSCATG00000008926	POLR2E	100	94.286	Cercocebus_atys
ENSHCOG00000000906	polr2eb	98	71.707	ENSCLAG00000009238	-	100	71.707	Chinchilla_lanigera
ENSHCOG00000000906	polr2eb	100	93.810	ENSCLAG00000014874	-	100	93.810	Chinchilla_lanigera
ENSHCOG00000000906	polr2eb	100	94.286	ENSCSAG00000012336	POLR2E	100	94.286	Chlorocebus_sabaeus
ENSHCOG00000000906	polr2eb	100	94.762	ENSCPBG00000009702	POLR2E	100	94.762	Chrysemys_picta_bellii
ENSHCOG00000000906	polr2eb	100	85.238	ENSCING00000024933	-	99	85.238	Ciona_intestinalis
ENSHCOG00000000906	polr2eb	100	94.286	ENSCANG00000025560	POLR2E	100	94.286	Colobus_angolensis_palliatus
ENSHCOG00000000906	polr2eb	100	94.286	ENSCGRG00001022927	Polr2e	100	94.286	Cricetulus_griseus_chok1gshd
ENSHCOG00000000906	polr2eb	100	87.907	ENSCGRG00000016441	Polr2e	100	87.907	Cricetulus_griseus_crigri
ENSHCOG00000000906	polr2eb	100	97.143	ENSCSEG00000007107	polr2eb	100	96.721	Cynoglossus_semilaevis
ENSHCOG00000000906	polr2eb	100	98.571	ENSCVAG00000019940	polr2eb	100	98.571	Cyprinodon_variegatus
ENSHCOG00000000906	polr2eb	100	97.619	ENSDARG00000026183	polr2eb	100	97.619	Danio_rerio
ENSHCOG00000000906	polr2eb	90	93.684	ENSDNOG00000044994	POLR2E	84	93.684	Dasypus_novemcinctus
ENSHCOG00000000906	polr2eb	100	94.286	ENSDORG00000001154	Polr2e	100	94.286	Dipodomys_ordii
ENSHCOG00000000906	polr2eb	99	85.167	FBgn0033571	Rpb5	99	85.167	Drosophila_melanogaster
ENSHCOG00000000906	polr2eb	75	91.720	ENSEBUG00000010159	-	76	91.720	Eptatretus_burgeri
ENSHCOG00000000906	polr2eb	69	88.276	ENSEASG00005021615	POLR2E	61	88.276	Equus_asinus_asinus
ENSHCOG00000000906	polr2eb	100	93.443	ENSECAG00000011124	POLR2E	100	93.443	Equus_caballus
ENSHCOG00000000906	polr2eb	100	96.667	ENSELUG00000005815	POLR2E	100	96.667	Esox_lucius
ENSHCOG00000000906	polr2eb	100	95.714	ENSELUG00000020646	polr2e	100	95.714	Esox_lucius
ENSHCOG00000000906	polr2eb	100	93.810	ENSFCAG00000007318	POLR2E	100	93.810	Felis_catus
ENSHCOG00000000906	polr2eb	91	94.271	ENSFALG00000013986	POLR2E	99	94.271	Ficedula_albicollis
ENSHCOG00000000906	polr2eb	100	94.286	ENSFDAG00000014539	POLR2E	100	94.286	Fukomys_damarensis
ENSHCOG00000000906	polr2eb	100	98.571	ENSFHEG00000022398	polr2eb	100	98.571	Fundulus_heteroclitus
ENSHCOG00000000906	polr2eb	100	97.143	ENSGMOG00000007615	polr2eb	100	97.143	Gadus_morhua
ENSHCOG00000000906	polr2eb	100	94.762	ENSGALG00000002591	POLR2E	100	94.762	Gallus_gallus
ENSHCOG00000000906	polr2eb	100	98.095	ENSGAFG00000005087	polr2eb	100	98.095	Gambusia_affinis
ENSHCOG00000000906	polr2eb	100	97.143	ENSGACG00000013247	polr2eb	100	97.143	Gasterosteus_aculeatus
ENSHCOG00000000906	polr2eb	100	94.762	ENSGAGG00000008356	POLR2E	100	94.762	Gopherus_agassizii
ENSHCOG00000000906	polr2eb	100	94.286	ENSGGOG00000011267	POLR2E	100	94.286	Gorilla_gorilla
ENSHCOG00000000906	polr2eb	68	94.366	ENSHBUG00000011099	polr2eb	100	94.366	Haplochromis_burtoni
ENSHCOG00000000906	polr2eb	100	94.286	ENSHGLG00000013330	POLR2E	100	94.286	Heterocephalus_glaber_female
ENSHCOG00000000906	polr2eb	100	94.286	ENSHGLG00100011014	POLR2E	100	94.286	Heterocephalus_glaber_male
ENSHCOG00000000906	polr2eb	100	98.571	ENSIPUG00000019801	polr2e	100	98.571	Ictalurus_punctatus
ENSHCOG00000000906	polr2eb	100	94.286	ENSSTOG00000002853	POLR2E	100	94.286	Ictidomys_tridecemlineatus
ENSHCOG00000000906	polr2eb	100	87.432	ENSJJAG00000003145	-	100	87.432	Jaculus_jaculus
ENSHCOG00000000906	polr2eb	100	94.286	ENSJJAG00000016595	-	100	94.286	Jaculus_jaculus
ENSHCOG00000000906	polr2eb	77	77.019	ENSJJAG00000015812	-	100	77.019	Jaculus_jaculus
ENSHCOG00000000906	polr2eb	100	98.571	ENSKMAG00000005954	polr2eb	100	98.571	Kryptolebias_marmoratus
ENSHCOG00000000906	polr2eb	100	98.571	ENSLBEG00000024802	polr2eb	100	98.571	Labrus_bergylta
ENSHCOG00000000906	polr2eb	100	96.190	ENSLACG00000013686	POLR2E	100	96.190	Latimeria_chalumnae
ENSHCOG00000000906	polr2eb	77	97.531	ENSLOCG00000004599	POLR2E	100	97.531	Lepisosteus_oculatus
ENSHCOG00000000906	polr2eb	100	75.472	ENSLAFG00000025587	POLR2E	100	75.472	Loxodonta_africana
ENSHCOG00000000906	polr2eb	100	94.286	ENSMFAG00000002884	POLR2E	100	94.286	Macaca_fascicularis
ENSHCOG00000000906	polr2eb	100	94.286	ENSMMUG00000013927	POLR2E	100	94.286	Macaca_mulatta
ENSHCOG00000000906	polr2eb	100	94.286	ENSMNEG00000034046	-	100	94.286	Macaca_nemestrina
ENSHCOG00000000906	polr2eb	100	63.033	ENSMNEG00000033452	-	100	63.033	Macaca_nemestrina
ENSHCOG00000000906	polr2eb	92	77.720	ENSMLEG00000012405	POLR2E	94	77.720	Mandrillus_leucophaeus
ENSHCOG00000000906	polr2eb	100	98.571	ENSMAMG00000018703	polr2eb	100	98.571	Mastacembelus_armatus
ENSHCOG00000000906	polr2eb	100	97.814	ENSMZEG00005010796	polr2eb	100	97.814	Maylandia_zebra
ENSHCOG00000000906	polr2eb	100	93.839	ENSMGAG00000003769	POLR2E	100	93.839	Meleagris_gallopavo
ENSHCOG00000000906	polr2eb	92	93.264	ENSMAUG00000010125	-	100	93.717	Mesocricetus_auratus
ENSHCOG00000000906	polr2eb	100	64.286	ENSMAUG00000011003	-	100	64.286	Mesocricetus_auratus
ENSHCOG00000000906	polr2eb	100	94.286	ENSMICG00000013063	POLR2E	100	94.286	Microcebus_murinus
ENSHCOG00000000906	polr2eb	100	94.286	ENSMOCG00000013414	Polr2e	100	94.286	Microtus_ochrogaster
ENSHCOG00000000906	polr2eb	100	96.721	ENSMMOG00000001161	polr2eb	100	96.721	Mola_mola
ENSHCOG00000000906	polr2eb	91	87.958	ENSMMOG00000001167	polr2eb	88	87.958	Mola_mola
ENSHCOG00000000906	polr2eb	100	94.762	ENSMODG00000005494	POLR2E	100	94.762	Monodelphis_domestica
ENSHCOG00000000906	polr2eb	100	97.619	ENSMALG00000021888	polr2eb	100	97.619	Monopterus_albus
ENSHCOG00000000906	polr2eb	100	94.286	MGP_CAROLIEiJ_G0015561	Polr2e	100	94.286	Mus_caroli
ENSHCOG00000000906	polr2eb	100	94.286	ENSMUSG00000004667	Polr2e	100	94.286	Mus_musculus
ENSHCOG00000000906	polr2eb	100	94.286	MGP_PahariEiJ_G0030974	Polr2e	100	94.286	Mus_pahari
ENSHCOG00000000906	polr2eb	100	94.286	MGP_SPRETEiJ_G0016379	Polr2e	100	94.286	Mus_spretus
ENSHCOG00000000906	polr2eb	100	93.333	ENSMPUG00000008953	POLR2E	100	93.333	Mustela_putorius_furo
ENSHCOG00000000906	polr2eb	100	94.286	ENSMLUG00000013193	POLR2E	100	94.286	Myotis_lucifugus
ENSHCOG00000000906	polr2eb	66	88.406	ENSMLUG00000006376	-	100	77.778	Myotis_lucifugus
ENSHCOG00000000906	polr2eb	100	94.286	ENSNGAG00000001147	Polr2e	100	94.286	Nannospalax_galili
ENSHCOG00000000906	polr2eb	85	71.508	ENSNGAG00000017344	-	96	71.508	Nannospalax_galili
ENSHCOG00000000906	polr2eb	100	97.814	ENSNBRG00000022772	polr2eb	100	97.814	Neolamprologus_brichardi
ENSHCOG00000000906	polr2eb	100	90.521	ENSNLEG00000001207	-	100	90.521	Nomascus_leucogenys
ENSHCOG00000000906	polr2eb	100	71.905	ENSNLEG00000031364	-	100	71.905	Nomascus_leucogenys
ENSHCOG00000000906	polr2eb	100	82.857	ENSOPRG00000008331	POLR2E	100	82.857	Ochotona_princeps
ENSHCOG00000000906	polr2eb	89	83.333	ENSODEG00000007985	-	100	83.333	Octodon_degus
ENSHCOG00000000906	polr2eb	100	94.286	ENSODEG00000013230	-	100	94.286	Octodon_degus
ENSHCOG00000000906	polr2eb	100	70.312	ENSODEG00000011490	-	100	70.312	Octodon_degus
ENSHCOG00000000906	polr2eb	100	97.619	ENSONIG00000002519	polr2eb	100	97.619	Oreochromis_niloticus
ENSHCOG00000000906	polr2eb	100	98.095	ENSORLG00000015346	polr2eb	100	98.095	Oryzias_latipes
ENSHCOG00000000906	polr2eb	100	98.095	ENSORLG00020020700	polr2e	100	98.095	Oryzias_latipes_hni
ENSHCOG00000000906	polr2eb	100	98.095	ENSORLG00015016842	polr2e	100	98.095	Oryzias_latipes_hsok
ENSHCOG00000000906	polr2eb	100	98.571	ENSOMEG00000002709	polr2eb	100	98.571	Oryzias_melastigma
ENSHCOG00000000906	polr2eb	100	94.286	ENSOGAG00000012311	POLR2E	100	94.286	Otolemur_garnettii
ENSHCOG00000000906	polr2eb	100	94.286	ENSOARG00000010994	POLR2E	100	94.286	Ovis_aries
ENSHCOG00000000906	polr2eb	91	93.717	ENSPPAG00000003145	POLR2E	100	93.717	Pan_paniscus
ENSHCOG00000000906	polr2eb	100	93.810	ENSPPRG00000000777	POLR2E	100	93.810	Panthera_pardus
ENSHCOG00000000906	polr2eb	90	83.636	ENSPTIG00000012237	POLR2E	98	88.158	Panthera_tigris_altaica
ENSHCOG00000000906	polr2eb	100	94.286	ENSPTRG00000010183	POLR2E	100	94.286	Pan_troglodytes
ENSHCOG00000000906	polr2eb	100	94.286	ENSPANG00000018011	POLR2E	100	94.286	Papio_anubis
ENSHCOG00000000906	polr2eb	100	97.143	ENSPKIG00000024123	POLR2E	100	97.143	Paramormyrops_kingsleyae
ENSHCOG00000000906	polr2eb	100	97.143	ENSPKIG00000009607	POLR2E	100	97.143	Paramormyrops_kingsleyae
ENSHCOG00000000906	polr2eb	98	90.732	ENSPSIG00000002870	POLR2E	99	90.732	Pelodiscus_sinensis
ENSHCOG00000000906	polr2eb	100	98.361	ENSPMGG00000014354	polr2eb	100	98.361	Periophthalmus_magnuspinnatus
ENSHCOG00000000906	polr2eb	100	94.286	ENSPEMG00000023261	Polr2e	100	94.286	Peromyscus_maniculatus_bairdii
ENSHCOG00000000906	polr2eb	90	94.180	ENSPCIG00000007312	POLR2E	75	94.180	Phascolarctos_cinereus
ENSHCOG00000000906	polr2eb	100	98.095	ENSPFOG00000005734	polr2eb	100	98.095	Poecilia_formosa
ENSHCOG00000000906	polr2eb	100	98.095	ENSPLAG00000014496	polr2eb	100	98.095	Poecilia_latipinna
ENSHCOG00000000906	polr2eb	100	98.095	ENSPMEG00000008053	polr2eb	100	98.095	Poecilia_mexicana
ENSHCOG00000000906	polr2eb	100	98.095	ENSPREG00000006489	polr2eb	100	98.095	Poecilia_reticulata
ENSHCOG00000000906	polr2eb	100	86.730	ENSPPYG00000009305	POLR2E	100	86.730	Pongo_abelii
ENSHCOG00000000906	polr2eb	53	92.793	ENSPCAG00000016605	POLR2E	100	92.793	Procavia_capensis
ENSHCOG00000000906	polr2eb	100	94.286	ENSPCOG00000014491	POLR2E	100	94.286	Propithecus_coquereli
ENSHCOG00000000906	polr2eb	75	100.000	ENSPVAG00000007718	-	65	100.000	Pteropus_vampyrus
ENSHCOG00000000906	polr2eb	90	97.895	ENSPNYG00000019797	polr2eb	96	97.895	Pundamilia_nyererei
ENSHCOG00000000906	polr2eb	100	97.619	ENSPNAG00000026263	POLR2E	100	97.619	Pygocentrus_nattereri
ENSHCOG00000000906	polr2eb	100	94.286	ENSRNOG00000013545	Polr2e	100	94.286	Rattus_norvegicus
ENSHCOG00000000906	polr2eb	100	69.194	ENSRBIG00000027259	-	100	69.194	Rhinopithecus_bieti
ENSHCOG00000000906	polr2eb	100	94.286	ENSRBIG00000028726	-	100	94.286	Rhinopithecus_bieti
ENSHCOG00000000906	polr2eb	100	94.286	ENSRROG00000043763	POLR2E	100	94.286	Rhinopithecus_roxellana
ENSHCOG00000000906	polr2eb	99	44.495	YBR154C	RPB5	98	44.495	Saccharomyces_cerevisiae
ENSHCOG00000000906	polr2eb	100	94.286	ENSSBOG00000027241	POLR2E	100	94.286	Saimiri_boliviensis_boliviensis
ENSHCOG00000000906	polr2eb	100	94.762	ENSSHAG00000010690	POLR2E	100	94.762	Sarcophilus_harrisii
ENSHCOG00000000906	polr2eb	100	98.571	ENSSFOG00015006073	polr2e	100	98.571	Scleropages_formosus
ENSHCOG00000000906	polr2eb	100	98.571	ENSSMAG00000012782	polr2eb	100	98.571	Scophthalmus_maximus
ENSHCOG00000000906	polr2eb	100	98.571	ENSSDUG00000003352	polr2eb	100	98.571	Seriola_dumerili
ENSHCOG00000000906	polr2eb	100	98.571	ENSSLDG00000004965	polr2eb	100	98.571	Seriola_lalandi_dorsalis
ENSHCOG00000000906	polr2eb	100	94.762	ENSSPUG00000006114	POLR2E	100	94.762	Sphenodon_punctatus
ENSHCOG00000000906	polr2eb	100	98.571	ENSSPAG00000017556	polr2eb	100	98.571	Stegastes_partitus
ENSHCOG00000000906	polr2eb	100	94.286	ENSSSCG00000021472	POLR2E	100	94.286	Sus_scrofa
ENSHCOG00000000906	polr2eb	75	82.609	ENSTGUG00000000922	POLR2E	99	85.714	Taeniopygia_guttata
ENSHCOG00000000906	polr2eb	100	98.361	ENSTRUG00000018238	polr2eb	100	98.361	Takifugu_rubripes
ENSHCOG00000000906	polr2eb	100	98.571	ENSTNIG00000013187	polr2eb	100	98.571	Tetraodon_nigroviridis
ENSHCOG00000000906	polr2eb	100	93.810	ENSTTRG00000001484	POLR2E	100	93.810	Tursiops_truncatus
ENSHCOG00000000906	polr2eb	100	92.896	ENSUAMG00000009166	POLR2E	100	92.896	Ursus_americanus
ENSHCOG00000000906	polr2eb	100	94.286	ENSVVUG00000022818	POLR2E	54	94.286	Vulpes_vulpes
ENSHCOG00000000906	polr2eb	100	95.714	ENSXETG00000003291	polr2e	100	95.714	Xenopus_tropicalis
ENSHCOG00000000906	polr2eb	100	97.814	ENSXCOG00000009197	polr2eb	100	97.814	Xiphophorus_couchianus
ENSHCOG00000000906	polr2eb	100	98.095	ENSXMAG00000026495	polr2eb	100	98.095	Xiphophorus_maculatus