EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000001071 (Gene tree)
Gene ID: 109507380
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 5645 bases
Position: chrKV880483.1:2658046-2663690
Accession: 109507380
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000290	PRP38	PF03371.15	1.8e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000014022	-	2349	XM_019856762	ENSHCOP00000000290	456 (aa)	XP_019712321	UPI00094E2AAA

Gene Model

Click here to download ENSHCOG00000001071's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001071's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001071	-	100	84.052	ENSATEG00000014482	-	100	84.698	Anabas_testudineus
ENSHCOG00000001071	-	62	86.572	ENSAMXG00000039494	-	55	66.761	Astyanax_mexicanus
ENSHCOG00000001071	-	61	82.206	ENSBTAG00000047874	PRPF38B	78	63.362	Bos_taurus
ENSHCOG00000001071	-	59	46.296	WBGene00022434	Y108G3AL.2	63	53.333	Caenorhabditis_elegans
ENSHCOG00000001071	-	61	82.206	ENSCHIG00000024357	-	78	63.362	Capra_hircus
ENSHCOG00000001071	-	60	83.212	ENSCLAG00000005801	-	83	63.368	Chinchilla_lanigera
ENSHCOG00000001071	-	67	56.352	ENSCSAVG00000009443	-	70	73.684	Ciona_savignyi
ENSHCOG00000001071	-	100	83.369	ENSCSEG00000015030	-	100	80.994	Cynoglossus_semilaevis
ENSHCOG00000001071	-	99	64.961	ENSELUG00000010390	-	50	85.768	Esox_lucius
ENSHCOG00000001071	-	99	73.885	ENSGMOG00000012080	-	99	70.488	Gadus_morhua
ENSHCOG00000001071	-	99	60.886	ENSGALG00000001972	-	77	63.948	Gallus_gallus
ENSHCOG00000001071	-	100	79.310	ENSGAFG00000008943	-	100	79.355	Gambusia_affinis
ENSHCOG00000001071	-	99	65.605	ENSGAGG00000001563	-	83	62.947	Gopherus_agassizii
ENSHCOG00000001071	-	100	78.481	ENSKMAG00000005540	-	100	79.114	Kryptolebias_marmoratus
ENSHCOG00000001071	-	100	81.935	ENSMMOG00000011639	-	99	81.681	Mola_mola
ENSHCOG00000001071	-	65	79.085	ENSMODG00000002350	-	65	92.574	Monodelphis_domestica
ENSHCOG00000001071	-	100	85.806	ENSMALG00000019479	-	100	84.914	Monopterus_albus
ENSHCOG00000001071	-	100	83.120	ENSONIG00000010129	-	100	82.759	Oreochromis_niloticus
ENSHCOG00000001071	-	87	64.371	ENSOANG00000007343	-	53	85.903	Ornithorhynchus_anatinus
ENSHCOG00000001071	-	100	81.385	ENSORLG00000015621	-	95	93.293	Oryzias_latipes
ENSHCOG00000001071	-	100	81.385	ENSORLG00020016276	-	94	93.293	Oryzias_latipes_hni
ENSHCOG00000001071	-	100	81.169	ENSORLG00015016270	-	100	81.169	Oryzias_latipes_hsok
ENSHCOG00000001071	-	100	81.169	ENSOMEG00000022050	-	97	92.771	Oryzias_melastigma
ENSHCOG00000001071	-	58	83.774	ENSOARG00000018899	-	76	63.474	Ovis_aries
ENSHCOG00000001071	-	100	79.310	ENSPFOG00000004025	-	100	79.140	Poecilia_formosa
ENSHCOG00000001071	-	100	79.310	ENSPLAG00000019842	-	100	79.140	Poecilia_latipinna
ENSHCOG00000001071	-	100	79.095	ENSPMEG00000004807	-	97	78.925	Poecilia_mexicana
ENSHCOG00000001071	-	100	78.233	ENSPREG00000015599	-	89	91.463	Poecilia_reticulata
ENSHCOG00000001071	-	62	83.274	ENSPNAG00000017484	-	93	66.109	Pygocentrus_nattereri
ENSHCOG00000001071	-	86	73.000	ENSSFOG00015011251	-	81	92.308	Scleropages_formosus
ENSHCOG00000001071	-	100	82.051	ENSSLDG00000023487	-	89	93.902	Seriola_lalandi_dorsalis
ENSHCOG00000001071	-	100	80.994	ENSTRUG00000011765	-	100	80.994	Takifugu_rubripes
ENSHCOG00000001071	-	99	80.952	ENSTNIG00000015299	-	99	70.217	Tetraodon_nigroviridis
ENSHCOG00000001071	-	100	79.274	ENSXCOG00000008329	-	100	79.140	Xiphophorus_couchianus
ENSHCOG00000001071	-	100	79.060	ENSXMAG00000023831	-	100	78.925	Xiphophorus_maculatus