EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000001089 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4778 bases
Position: chrKV879870.1:1677674-1682451
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000302	SM-ATX	PF14438.6	6.1e-09	1	1
ENSHCOP00000000302	LSM14	PF12701.7	7.6e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000013998	-	300	-	ENSHCOP00000000302	99 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000001089's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001089's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000001089	-	85	89.286	ENSHCOG00000009227	-	83	89.286
ENSHCOG00000001089	-	84	76.190	ENSHCOG00000004862	-	77	76.190

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001089	-	81	98.750	ENSG00000257103	LSM14A	79	97.531	Homo_sapiens
ENSHCOG00000001089	-	86	87.209	ENSAPEG00000012119	lsm14aa	79	89.024	Amphiprion_percula
ENSHCOG00000001089	-	79	79.487	ENSANAG00000031175	-	77	79.487	Aotus_nancymaae
ENSHCOG00000001089	-	81	98.750	ENSANAG00000019299	-	78	98.750	Aotus_nancymaae
ENSHCOG00000001089	-	92	89.011	ENSACLG00000018221	-	89	89.011	Astatotilapia_calliptera
ENSHCOG00000001089	-	81	98.750	ENSCJAG00000010360	LSM14A	78	98.750	Callithrix_jacchus
ENSHCOG00000001089	-	80	83.544	ENSCCAG00000037290	-	72	83.544	Cebus_capucinus
ENSHCOG00000001089	-	81	96.250	ENSCCAG00000028536	-	80	96.250	Cebus_capucinus
ENSHCOG00000001089	-	81	88.750	ENSCCAG00000038098	-	79	88.750	Cebus_capucinus
ENSHCOG00000001089	-	83	91.463	ENSCSEG00000021457	lsm14aa	82	89.286	Cynoglossus_semilaevis
ENSHCOG00000001089	-	86	93.023	ENSDARG00000006600	lsm14aa	96	95.122	Danio_rerio
ENSHCOG00000001089	-	82	97.531	ENSGAGG00000016098	-	74	97.531	Gopherus_agassizii
ENSHCOG00000001089	-	81	98.750	ENSHGLG00100000160	-	63	98.750	Heterocephalus_glaber_male
ENSHCOG00000001089	-	82	95.062	ENSHGLG00100017085	-	81	95.062	Heterocephalus_glaber_male
ENSHCOG00000001089	-	86	91.860	ENSLBEG00000010487	lsm14aa	72	92.771	Labrus_bergylta
ENSHCOG00000001089	-	87	96.512	ENSMZEG00005005945	-	61	96.512	Maylandia_zebra
ENSHCOG00000001089	-	83	90.244	ENSMMOG00000016341	-	93	90.244	Mola_mola
ENSHCOG00000001089	-	81	91.250	ENSNLEG00000034705	-	66	90.123	Nomascus_leucogenys
ENSHCOG00000001089	-	87	96.512	ENSORLG00000028980	-	72	96.512	Oryzias_latipes
ENSHCOG00000001089	-	87	96.512	ENSORLG00020019931	-	72	96.512	Oryzias_latipes_hni
ENSHCOG00000001089	-	79	59.524	ENSORLG00015018292	-	77	59.524	Oryzias_latipes_hsok
ENSHCOG00000001089	-	82	96.296	ENSOMEG00000016637	-	50	96.296	Oryzias_melastigma
ENSHCOG00000001089	-	81	97.500	ENSPTRG00000040949	-	82	97.500	Pan_troglodytes
ENSHCOG00000001089	-	81	95.000	ENSPMGG00000007198	-	75	95.000	Periophthalmus_magnuspinnatus
ENSHCOG00000001089	-	89	91.011	ENSPMGG00000000220	lsm14aa	98	79.412	Periophthalmus_magnuspinnatus
ENSHCOG00000001089	-	71	98.571	ENSPCOG00000016240	-	74	98.571	Propithecus_coquereli
ENSHCOG00000001089	-	80	87.342	ENSSBOG00000021178	-	55	87.342	Saimiri_boliviensis_boliviensis
ENSHCOG00000001089	-	81	98.750	ENSSBOG00000020141	-	78	98.750	Saimiri_boliviensis_boliviensis
ENSHCOG00000001089	-	81	82.500	ENSSBOG00000023312	-	78	82.500	Saimiri_boliviensis_boliviensis
ENSHCOG00000001089	-	78	90.909	ENSTRUG00000024267	-	53	90.909	Takifugu_rubripes
ENSHCOG00000001089	-	81	98.750	ENSUAMG00000017314	LSM14A	71	97.531	Ursus_americanus
ENSHCOG00000001089	-	82	74.074	ENSUMAG00000004345	-	84	74.074	Ursus_maritimus