EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000001170 (Gene tree)
Gene ID: -
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 1302 bases
Position: chrKV880483.1:2436328-2437629
Accession: 109507330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000017403	RRM_1	PF00076.22	6.5e-27	1	1
ENSHCOP00000017405	RRM_1	PF00076.22	1.1e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000013891	-	453	XM_019856671	ENSHCOP00000017405	150 (aa)	XP_019712230	-
ENSHCOT00000013889	-	363	-	ENSHCOP00000017403	120 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000001170's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001170's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000001170	cirbpa	68	37.500	ENSHCOG00000012571	rbm14b	90	33.784
ENSHCOG00000001170	cirbpa	65	44.304	ENSHCOG00000018058	-	65	46.575
ENSHCOG00000001170	cirbpa	65	43.590	ENSHCOG00000008598	-	59	44.000
ENSHCOG00000001170	cirbpa	82	37.000	ENSHCOG00000019356	rbm24a	65	43.421
ENSHCOG00000001170	cirbpa	62	38.667	ENSHCOG00000014147	-	69	38.667
ENSHCOG00000001170	cirbpa	65	38.667	ENSHCOG00000002490	elavl4	60	38.667
ENSHCOG00000001170	cirbpa	65	36.000	ENSHCOG00000020439	-	61	36.000
ENSHCOG00000001170	cirbpa	67	41.250	ENSHCOG00000007180	-	64	42.105
ENSHCOG00000001170	cirbpa	97	40.506	ENSHCOG00000000087	hnrnpd	51	40.506
ENSHCOG00000001170	cirbpa	68	42.683	ENSHCOG00000007174	HNRNPA0	83	42.683
ENSHCOG00000001170	cirbpa	73	37.500	ENSHCOG00000015894	elavl3	61	38.667
ENSHCOG00000001170	cirbpa	61	32.877	ENSHCOG00000010866	-	76	32.877
ENSHCOG00000001170	cirbpa	60	33.333	ENSHCOG00000019962	sf3b6	55	33.333
ENSHCOG00000001170	cirbpa	65	40.000	ENSHCOG00000005961	elavl2	58	40.000
ENSHCOG00000001170	cirbpa	66	40.506	ENSHCOG00000015341	hnrnpaba	51	40.506

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001170	cirbpa	69	72.289	ENSAMXG00000002894	cirbpa	51	71.605	Astyanax_mexicanus
ENSHCOG00000001170	cirbpa	79	89.474	ENSCVAG00000004853	cirbpa	51	84.783	Cyprinodon_variegatus
ENSHCOG00000001170	cirbpa	69	74.699	ENSELUG00000004675	-	55	74.074	Esox_lucius
ENSHCOG00000001170	cirbpa	69	75.904	ENSELUG00000019588	cirbpb	58	64.407	Esox_lucius
ENSHCOG00000001170	cirbpa	68	77.778	ENSGMOG00000012137	cirbpa	66	61.789	Gadus_morhua
ENSHCOG00000001170	cirbpa	100	63.462	ENSLBEG00000000292	cirbpa	50	81.481	Labrus_bergylta
ENSHCOG00000001170	cirbpa	69	83.133	ENSLBEG00000027731	-	66	82.716	Labrus_bergylta
ENSHCOG00000001170	cirbpa	58	82.857	ENSMMOG00000010696	cirbpa	84	82.857	Mola_mola
ENSHCOG00000001170	cirbpa	69	75.904	ENSPNAG00000019997	cirbpb	50	54.386	Pygocentrus_nattereri
ENSHCOG00000001170	cirbpa	83	71.000	ENSPNAG00000024569	cirbpa	56	71.000	Pygocentrus_nattereri
ENSHCOG00000001170	cirbpa	100	55.901	ENSSDUG00000016099	cirbpa	75	56.198	Seriola_dumerili
ENSHCOG00000001170	cirbpa	99	67.114	ENSSPAG00000023037	cirbpa	66	76.636	Stegastes_partitus
ENSHCOG00000001170	cirbpa	90	76.852	ENSTRUG00000010187	cirbpa	60	86.420	Takifugu_rubripes
ENSHCOG00000001170	cirbpa	79	90.526	ENSXCOG00000008262	cirbpa	92	89.041	Xiphophorus_couchianus