EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000001215 (Gene tree)
Gene ID: 109521826
Gene Symbol: si:dkey-37o8.1
Alias: fi12b10|wu:fi12b10
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 2814 bases
Position: chrKV880119.1:122031-124844
Accession: 109521826
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000404	GTP_EFTU	PF00009.27	4e-51	1	1
ENSHCOP00000000404	GTP_EFTU_D2	PF03144.25	4.7e-10	1	1
ENSHCOP00000000404	GTP_EFTU_D3	PF03143.17	3.8e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000013828	-	1338	XM_019879892	ENSHCOP00000000404	445 (aa)	XP_019735451	-

Gene Model

Click here to download ENSHCOG00000001215's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000001215	si:dkey-37o8.1	98	68.243	ENSHCOG00000014718	eef1a1b	96	68.243
ENSHCOG00000001215	si:dkey-37o8.1	97	37.188	ENSHCOG00000007581	hbs1l	58	37.188
ENSHCOG00000001215	si:dkey-37o8.1	98	35.730	ENSHCOG00000016899	gspt1l	74	35.730
ENSHCOG00000001215	si:dkey-37o8.1	98	35.281	ENSHCOG00000015286	GSPT1	73	35.281
ENSHCOG00000001215	si:dkey-37o8.1	98	66.290	ENSHCOG00000008468	-	96	66.290
ENSHCOG00000001215	si:dkey-37o8.1	98	30.045	ENSHCOG00000014418	tufm	90	30.045
ENSHCOG00000001215	si:dkey-37o8.1	98	65.011	ENSHCOG00000008489	-	96	65.011

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001215	si:dkey-37o8.1	99	79.018	ENSAPOG00000016459	si:dkey-37o8.1	98	79.018	Acanthochromis_polyacanthus
ENSHCOG00000001215	si:dkey-37o8.1	99	77.978	ENSACIG00000020985	si:dkey-37o8.1	83	77.978	Amphilophus_citrinellus
ENSHCOG00000001215	si:dkey-37o8.1	100	79.379	ENSAOCG00000002663	si:dkey-37o8.1	99	79.379	Amphiprion_ocellaris
ENSHCOG00000001215	si:dkey-37o8.1	99	79.911	ENSAPEG00000012670	si:dkey-37o8.1	98	79.911	Amphiprion_percula
ENSHCOG00000001215	si:dkey-37o8.1	93	82.701	ENSATEG00000002217	si:dkey-37o8.1	99	82.701	Anabas_testudineus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.044	ENSACLG00000003519	si:dkey-37o8.1	99	80.044	Astatotilapia_calliptera
ENSHCOG00000001215	si:dkey-37o8.1	98	76.975	ENSAMXG00000002728	si:dkey-37o8.1	97	76.975	Astyanax_mexicanus
ENSHCOG00000001215	si:dkey-37o8.1	98	69.318	ENSCPBG00000020570	-	87	69.318	Chrysemys_picta_bellii
ENSHCOG00000001215	si:dkey-37o8.1	98	78.202	ENSCSEG00000019807	si:dkey-37o8.1	97	77.556	Cynoglossus_semilaevis
ENSHCOG00000001215	si:dkey-37o8.1	99	80.804	ENSCVAG00000009828	si:dkey-37o8.1	98	80.804	Cyprinodon_variegatus
ENSHCOG00000001215	si:dkey-37o8.1	98	74.944	ENSDARG00000071727	si:dkey-37o8.1	92	74.944	Danio_rerio
ENSHCOG00000001215	si:dkey-37o8.1	99	75.893	ENSELUG00000007495	si:dkey-37o8.1	98	75.893	Esox_lucius
ENSHCOG00000001215	si:dkey-37o8.1	100	80.710	ENSFHEG00000017452	si:dkey-37o8.1	99	80.710	Fundulus_heteroclitus
ENSHCOG00000001215	si:dkey-37o8.1	98	78.555	ENSGMOG00000006122	si:dkey-37o8.1	98	78.555	Gadus_morhua
ENSHCOG00000001215	si:dkey-37o8.1	99	75.561	ENSGAFG00000000367	si:dkey-37o8.1	99	75.561	Gambusia_affinis
ENSHCOG00000001215	si:dkey-37o8.1	99	79.333	ENSGACG00000004505	si:dkey-37o8.1	98	79.333	Gasterosteus_aculeatus
ENSHCOG00000001215	si:dkey-37o8.1	98	69.545	ENSGAGG00000007724	-	93	77.885	Gopherus_agassizii
ENSHCOG00000001215	si:dkey-37o8.1	100	79.823	ENSHBUG00000015515	si:dkey-37o8.1	99	79.823	Haplochromis_burtoni
ENSHCOG00000001215	si:dkey-37o8.1	98	75.395	ENSIPUG00000004067	si:dkey-37o8.1	97	75.395	Ictalurus_punctatus
ENSHCOG00000001215	si:dkey-37o8.1	99	79.333	ENSKMAG00000015910	si:dkey-37o8.1	98	79.333	Kryptolebias_marmoratus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.931	ENSLBEG00000021334	si:dkey-37o8.1	90	80.931	Labrus_bergylta
ENSHCOG00000001215	si:dkey-37o8.1	98	70.495	ENSLACG00000003948	si:dkey-37o8.1	97	70.495	Latimeria_chalumnae
ENSHCOG00000001215	si:dkey-37o8.1	98	73.589	ENSLOCG00000011245	si:dkey-37o8.1	97	73.589	Lepisosteus_oculatus
ENSHCOG00000001215	si:dkey-37o8.1	98	70.495	ENSMAMG00000009907	si:dkey-37o8.1	93	70.495	Mastacembelus_armatus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.044	ENSMZEG00005018358	si:dkey-37o8.1	99	80.044	Maylandia_zebra
ENSHCOG00000001215	si:dkey-37o8.1	99	78.842	ENSMMOG00000004111	si:dkey-37o8.1	98	78.842	Mola_mola
ENSHCOG00000001215	si:dkey-37o8.1	97	73.288	ENSMALG00000017152	si:dkey-37o8.1	99	73.288	Monopterus_albus
ENSHCOG00000001215	si:dkey-37o8.1	100	79.823	ENSNBRG00000013552	si:dkey-37o8.1	99	79.823	Neolamprologus_brichardi
ENSHCOG00000001215	si:dkey-37o8.1	98	80.587	ENSONIG00000006165	si:dkey-37o8.1	97	80.587	Oreochromis_niloticus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.266	ENSORLG00000019066	si:dkey-37o8.1	99	80.266	Oryzias_latipes
ENSHCOG00000001215	si:dkey-37o8.1	100	80.266	ENSORLG00020008094	si:dkey-37o8.1	99	80.266	Oryzias_latipes_hni
ENSHCOG00000001215	si:dkey-37o8.1	100	80.488	ENSORLG00015008410	si:dkey-37o8.1	99	80.488	Oryzias_latipes_hsok
ENSHCOG00000001215	si:dkey-37o8.1	100	80.931	ENSOMEG00000001868	si:dkey-37o8.1	99	80.931	Oryzias_melastigma
ENSHCOG00000001215	si:dkey-37o8.1	98	75.847	ENSPKIG00000017246	si:dkey-37o8.1	97	75.847	Paramormyrops_kingsleyae
ENSHCOG00000001215	si:dkey-37o8.1	56	62.738	ENSPSIG00000008080	-	93	62.738	Pelodiscus_sinensis
ENSHCOG00000001215	si:dkey-37o8.1	100	79.823	ENSPFOG00000013173	si:dkey-37o8.1	99	79.823	Poecilia_formosa
ENSHCOG00000001215	si:dkey-37o8.1	100	78.714	ENSPLAG00000010405	si:dkey-37o8.1	99	78.714	Poecilia_latipinna
ENSHCOG00000001215	si:dkey-37o8.1	100	80.266	ENSPMEG00000015233	si:dkey-37o8.1	99	80.266	Poecilia_mexicana
ENSHCOG00000001215	si:dkey-37o8.1	99	79.464	ENSPREG00000006280	si:dkey-37o8.1	99	79.464	Poecilia_reticulata
ENSHCOG00000001215	si:dkey-37o8.1	100	79.379	ENSPNYG00000002059	si:dkey-37o8.1	99	79.379	Pundamilia_nyererei
ENSHCOG00000001215	si:dkey-37o8.1	98	76.524	ENSPNAG00000009990	si:dkey-37o8.1	97	76.524	Pygocentrus_nattereri
ENSHCOG00000001215	si:dkey-37o8.1	98	74.492	ENSSFOG00015019070	si:dkey-37o8.1	97	74.492	Scleropages_formosus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.710	ENSSMAG00000016143	si:dkey-37o8.1	99	80.710	Scophthalmus_maximus
ENSHCOG00000001215	si:dkey-37o8.1	99	81.514	ENSSDUG00000009163	si:dkey-37o8.1	98	81.514	Seriola_dumerili
ENSHCOG00000001215	si:dkey-37o8.1	99	81.292	ENSSLDG00000023761	si:dkey-37o8.1	98	81.292	Seriola_lalandi_dorsalis
ENSHCOG00000001215	si:dkey-37o8.1	98	67.720	ENSSPUG00000007467	-	95	68.192	Sphenodon_punctatus
ENSHCOG00000001215	si:dkey-37o8.1	99	80.804	ENSSPAG00000013856	si:dkey-37o8.1	98	80.804	Stegastes_partitus
ENSHCOG00000001215	si:dkey-37o8.1	99	79.778	ENSTRUG00000009006	si:dkey-37o8.1	100	79.778	Takifugu_rubripes
ENSHCOG00000001215	si:dkey-37o8.1	98	80.180	ENSTNIG00000017138	si:dkey-37o8.1	96	80.180	Tetraodon_nigroviridis
ENSHCOG00000001215	si:dkey-37o8.1	97	71.298	ENSXETG00000017744	42Sp50	95	71.298	Xenopus_tropicalis
ENSHCOG00000001215	si:dkey-37o8.1	99	80.134	ENSXCOG00000012296	si:dkey-37o8.1	97	84.615	Xiphophorus_couchianus
ENSHCOG00000001215	si:dkey-37o8.1	100	80.266	ENSXMAG00000001998	si:dkey-37o8.1	99	80.266	Xiphophorus_maculatus