EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000001401 (Gene tree)
Gene ID
109518495
Gene Symbol
rpa1
Alias
wu:fi14b08|zgc:55337|zgc:77092
Full Name
replication protein A1
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Minus strand
Length
23165 bases
Position
chrKV880049.1:2614496-2637660
Accession
109518495
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000000570tRNA_anti-codonPF01336.251.1e-1311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000013569-2655XM_019874352ENSHCOP00000000570611 (aa)XP_019729911UPI00094E0A82
Gene Model
Click here to download ENSHCOG00000001401's gene model file
Pathways
Pathway IDPathway NameSource
hcq03030DNA replicationKEGG
hcq03420Nucleotide excision repairKEGG
hcq03430Mismatch repairKEGG
hcq03440Homologous recombinationKEGG
hcq03460Fanconi anemia pathwayKEGG
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000001401rpa19942.414ENSHCOG00000000351RPA19842.020
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000001401rpa19973.203ENSAPOG00000011658rpa19973.203Acanthochromis_polyacanthus
ENSHCOG00000001401rpa19958.487ENSAPOG00000019409RPA19162.132Acanthochromis_polyacanthus
ENSHCOG00000001401rpa19661.745ENSAMEG00000007706RPA19561.720Ailuropoda_melanoleuca
ENSHCOG00000001401rpa19665.816ENSACIG00000007277rpa19965.816Amphilophus_citrinellus
ENSHCOG00000001401rpa19557.288ENSACIG00000012881RPA19957.949Amphilophus_citrinellus
ENSHCOG00000001401rpa19954.121ENSAOCG00000009003RPA19954.277Amphiprion_ocellaris
ENSHCOG00000001401rpa19974.837ENSAOCG00000023376rpa19974.754Amphiprion_ocellaris
ENSHCOG00000001401rpa19974.346ENSAPEG00000008634rpa19974.262Amphiprion_percula
ENSHCOG00000001401rpa19953.566ENSAPEG00000019132RPA19953.191Amphiprion_percula
ENSHCOG00000001401rpa19573.928ENSATEG00000022024rpa110073.504Anabas_testudineus
ENSHCOG00000001401rpa19955.247ENSATEG00000006443RPA19954.671Anabas_testudineus
ENSHCOG00000001401rpa19762.621ENSAPLG00000012442RPA19062.621Anas_platyrhynchos
ENSHCOG00000001401rpa19955.610ENSACAG00000014490RPA19955.772Anolis_carolinensis
ENSHCOG00000001401rpa19662.162ENSANAG00000023456RPA19861.655Aotus_nancymaae
ENSHCOG00000001401rpa19473.391ENSACLG00000006640rpa19973.391Astatotilapia_calliptera
ENSHCOG00000001401rpa19956.113ENSACLG00000005223RPA19956.495Astatotilapia_calliptera
ENSHCOG00000001401rpa19970.443ENSAMXG00000008418rpa19970.772Astyanax_mexicanus
ENSHCOG00000001401rpa19960.848ENSBTAG00000009711RPA19960.258Bos_taurus
ENSHCOG00000001401rpa18530.755WBGene00017546rpa-16532.028Caenorhabditis_elegans
ENSHCOG00000001401rpa19959.675ENSCJAG00000001848RPA19958.966Callithrix_jacchus
ENSHCOG00000001401rpa19960.884ENSCAFG00000019249RPA19960.720Canis_familiaris
ENSHCOG00000001401rpa19960.884ENSCAFG00020009847RPA19960.720Canis_lupus_dingo
ENSHCOG00000001401rpa19961.264ENSCHIG00000026308RPA19960.806Capra_hircus
ENSHCOG00000001401rpa19960.976ENSTSYG00000003482-9960.359Carlito_syrichta
ENSHCOG00000001401rpa19960.556ENSCPOG00000000035RPA19960.390Cavia_porcellus
ENSHCOG00000001401rpa19952.195ENSCCAG00000010981RPA19951.608Cebus_capucinus
ENSHCOG00000001401rpa19958.756ENSCLAG00000015045-9958.442Chinchilla_lanigera
ENSHCOG00000001401rpa19961.827ENSCLAG00000005185-9961.489Chinchilla_lanigera
ENSHCOG00000001401rpa19952.941ENSCSAG00000013833RPA19953.171Chlorocebus_sabaeus
ENSHCOG00000001401rpa19560.237ENSCHOG00000013540-9959.727Choloepus_hoffmanni
ENSHCOG00000001401rpa17167.972ENSCHOG00000009454-9967.972Choloepus_hoffmanni
ENSHCOG00000001401rpa19959.967ENSCPBG00000020377RPA19960.808Chrysemys_picta_bellii
ENSHCOG00000001401rpa19941.667ENSCING00000023482-9941.100Ciona_intestinalis
ENSHCOG00000001401rpa19661.616ENSCANG00000030911RPA19761.616Colobus_angolensis_palliatus
ENSHCOG00000001401rpa19959.936ENSCGRG00001008197Rpa19959.646Cricetulus_griseus_chok1gshd
ENSHCOG00000001401rpa18261.434ENSCGRG00000000582Rpa19363.900Cricetulus_griseus_crigri
ENSHCOG00000001401rpa19953.045ENSCSEG00000012726RPA19952.921Cynoglossus_semilaevis
ENSHCOG00000001401rpa110071.916ENSCSEG00000013066rpa110071.916Cynoglossus_semilaevis
ENSHCOG00000001401rpa110073.864ENSCVAG00000019431rpa110074.026Cyprinodon_variegatus
ENSHCOG00000001401rpa19652.859ENSCVAG00000013446-8063.789Cyprinodon_variegatus
ENSHCOG00000001401rpa19969.394ENSDARG00000003938rpa19969.394Danio_rerio
ENSHCOG00000001401rpa19861.779ENSDNOG00000017218RPA19861.450Dasypus_novemcinctus
ENSHCOG00000001401rpa19960.784ENSDORG00000006199Rpa19960.656Dipodomys_ordii
ENSHCOG00000001401rpa19940.584FBgn0010173RpA-709940.000Drosophila_melanogaster
ENSHCOG00000001401rpa18275.789ENSETEG00000017608RPA18275.789Echinops_telfairi
ENSHCOG00000001401rpa19661.551ENSEASG00005009372RPA19961.207Equus_asinus_asinus
ENSHCOG00000001401rpa19960.813ENSECAG00000023886RPA19960.650Equus_caballus
ENSHCOG00000001401rpa16868.106ENSEEUG00000002186-6868.106Erinaceus_europaeus
ENSHCOG00000001401rpa19971.289ENSELUG00000021071rpa19971.289Esox_lucius
ENSHCOG00000001401rpa18859.150ENSELUG00000006136RPA19958.410Esox_lucius
ENSHCOG00000001401rpa19960.196ENSFCAG00000006306RPA19959.706Felis_catus
ENSHCOG00000001401rpa19959.641ENSFALG00000006575RPA19958.987Ficedula_albicollis
ENSHCOG00000001401rpa19962.418ENSFDAG00000007720RPA19962.075Fukomys_damarensis
ENSHCOG00000001401rpa110074.878ENSFHEG00000003580rpa110074.878Fundulus_heteroclitus
ENSHCOG00000001401rpa19967.980ENSGMOG00000010382rpa19968.144Gadus_morhua
ENSHCOG00000001401rpa19957.938ENSGALG00000003072RPA19957.610Gallus_gallus
ENSHCOG00000001401rpa110073.083ENSGAFG00000012916rpa110073.246Gambusia_affinis
ENSHCOG00000001401rpa19955.589ENSGAFG00000020953RPA18465.831Gambusia_affinis
ENSHCOG00000001401rpa110072.431ENSGACG00000010856rpa110072.104Gasterosteus_aculeatus
ENSHCOG00000001401rpa19959.641ENSGAGG00000013611RPA19959.508Gopherus_agassizii
ENSHCOG00000001401rpa19960.492ENSGGOG00000014186RPA19960.261Gorilla_gorilla
ENSHCOG00000001401rpa19975.490ENSHBUG00000017773rpa19975.490Haplochromis_burtoni
ENSHCOG00000001401rpa19552.048ENSHBUG00000009348RPA19851.877Haplochromis_burtoni
ENSHCOG00000001401rpa19962.013ENSHGLG00000008846RPA19961.750Heterocephalus_glaber_female
ENSHCOG00000001401rpa19957.843ENSHGLG00100000799-9958.023Heterocephalus_glaber_male
ENSHCOG00000001401rpa19952.932ENSHGLG00100002005-9952.520Heterocephalus_glaber_male
ENSHCOG00000001401rpa19962.013ENSHGLG00100017755-9961.750Heterocephalus_glaber_male
ENSHCOG00000001401rpa19970.473ENSIPUG00000004400rpa19969.821Ictalurus_punctatus
ENSHCOG00000001401rpa19161.082ENSSTOG00000022475RPA19560.839Ictidomys_tridecemlineatus
ENSHCOG00000001401rpa19562.795ENSJJAG00000000876Rpa19861.538Jaculus_jaculus
ENSHCOG00000001401rpa19957.236ENSKMAG00000000234RPA19956.863Kryptolebias_marmoratus
ENSHCOG00000001401rpa110073.430ENSKMAG00000005605rpa110073.779Kryptolebias_marmoratus
ENSHCOG00000001401rpa19975.777ENSLBEG00000021604rpa19975.450Labrus_bergylta
ENSHCOG00000001401rpa19957.746ENSLBEG00000002281RPA18361.556Labrus_bergylta
ENSHCOG00000001401rpa18156.513ENSLACG00000007210RPA19259.211Latimeria_chalumnae
ENSHCOG00000001401rpa19969.067ENSLOCG00000006397rpa19968.637Lepisosteus_oculatus
ENSHCOG00000001401rpa19960.577ENSLAFG00000015354RPA19960.256Loxodonta_africana
ENSHCOG00000001401rpa18060.040ENSMFAG00000036138-9860.279Macaca_fascicularis
ENSHCOG00000001401rpa19662.395ENSMMUG00000011604-9762.584Macaca_mulatta
ENSHCOG00000001401rpa19956.311ENSMMUG00000002442-9955.700Macaca_mulatta
ENSHCOG00000001401rpa18861.635ENSMNEG00000029837-9961.635Macaca_nemestrina
ENSHCOG00000001401rpa19561.695ENSMNEG00000031632-9861.889Macaca_nemestrina
ENSHCOG00000001401rpa19659.832ENSMLEG00000038768-9860.033Mandrillus_leucophaeus
ENSHCOG00000001401rpa110075.204ENSMAMG00000017993rpa110075.204Mastacembelus_armatus
ENSHCOG00000001401rpa19953.453ENSMAMG00000020097RPA19362.613Mastacembelus_armatus
ENSHCOG00000001401rpa19975.163ENSMZEG00005007551rpa19975.163Maylandia_zebra
ENSHCOG00000001401rpa19956.113ENSMZEG00005024731RPA19956.495Maylandia_zebra
ENSHCOG00000001401rpa19957.447ENSMGAG00000005315RPA19956.956Meleagris_gallopavo
ENSHCOG00000001401rpa19662.040ENSMAUG00000010474Rpa19861.706Mesocricetus_auratus
ENSHCOG00000001401rpa19960.778ENSMICG00000012867RPA19960.292Microcebus_murinus
ENSHCOG00000001401rpa19958.814ENSMOCG00000013019Rpa19958.497Microtus_ochrogaster
ENSHCOG00000001401rpa110072.757ENSMMOG00000014292rpa110074.705Mola_mola
ENSHCOG00000001401rpa19856.833ENSMMOG00000010868RPA19663.221Mola_mola
ENSHCOG00000001401rpa19960.323ENSMODG00000010549RPA19959.935Monodelphis_domestica
ENSHCOG00000001401rpa110075.041ENSMALG00000011453rpa110074.675Monopterus_albus
ENSHCOG00000001401rpa19962.870ENSMALG00000001208RPA18261.915Monopterus_albus
ENSHCOG00000001401rpa19959.135MGP_CAROLIEiJ_G0016734Rpa19959.314Mus_caroli
ENSHCOG00000001401rpa19958.637ENSMUSG00000000751Rpa19958.481Mus_musculus
ENSHCOG00000001401rpa19960.577MGP_PahariEiJ_G0017871Rpa19960.454Mus_pahari
ENSHCOG00000001401rpa19958.544MGP_SPRETEiJ_G0017577Rpa19958.387Mus_spretus
ENSHCOG00000001401rpa19960.292ENSMPUG00000013119RPA19959.675Mustela_putorius_furo
ENSHCOG00000001401rpa19661.603ENSMLUG00000006113RPA19561.102Myotis_lucifugus
ENSHCOG00000001401rpa19661.628ENSNGAG00000004522Rpa19461.065Nannospalax_galili
ENSHCOG00000001401rpa19854.050ENSNBRG00000009672RPA19753.530Neolamprologus_brichardi
ENSHCOG00000001401rpa19573.666ENSNBRG00000020595rpa19973.150Neolamprologus_brichardi
ENSHCOG00000001401rpa19961.564ENSNLEG00000017149RPA19961.426Nomascus_leucogenys
ENSHCOG00000001401rpa19655.818ENSMEUG00000006714RPA19754.882Notamacropus_eugenii
ENSHCOG00000001401rpa19562.312ENSODEG00000009038RPA19661.307Octodon_degus
ENSHCOG00000001401rpa19975.447ENSONIG00000013135rpa19975.122Oreochromis_niloticus
ENSHCOG00000001401rpa19860.920ENSOANG00000010880RPA19960.231Ornithorhynchus_anatinus
ENSHCOG00000001401rpa19959.815ENSOCUG00000001504RPA19958.942Oryctolagus_cuniculus
ENSHCOG00000001401rpa19972.623ENSORLG00000004856rpa19972.459Oryzias_latipes
ENSHCOG00000001401rpa19953.456ENSORLG00000003368RPA19952.074Oryzias_latipes
ENSHCOG00000001401rpa19952.640ENSORLG00020015284RPA18462.955Oryzias_latipes_hni
ENSHCOG00000001401rpa19972.787ENSORLG00020008980rpa19972.623Oryzias_latipes_hni
ENSHCOG00000001401rpa19972.787ENSORLG00015013982rpa19972.623Oryzias_latipes_hsok
ENSHCOG00000001401rpa16761.594ENSORLG00015005867-9561.594Oryzias_latipes_hsok
ENSHCOG00000001401rpa19953.991ENSORLG00015020383RPA19953.365Oryzias_latipes_hsok
ENSHCOG00000001401rpa19970.656ENSOMEG00000004704rpa19970.164Oryzias_melastigma
ENSHCOG00000001401rpa19455.749ENSOMEG00000011040RPA19955.556Oryzias_melastigma
ENSHCOG00000001401rpa17571.271ENSOGAG00000029379-9871.271Otolemur_garnettii
ENSHCOG00000001401rpa19960.737ENSOGAG00000005581-9960.356Otolemur_garnettii
ENSHCOG00000001401rpa19961.039ENSOARG00000014479RPA19960.582Ovis_aries
ENSHCOG00000001401rpa19961.564ENSPPAG00000039680RPA19961.750Pan_paniscus
ENSHCOG00000001401rpa19960.359ENSPPRG00000011807RPA19959.380Panthera_pardus
ENSHCOG00000001401rpa19960.359ENSPTIG00000007898RPA19959.380Panthera_tigris_altaica
ENSHCOG00000001401rpa19961.726ENSPTRG00000008539RPA19961.912Pan_troglodytes
ENSHCOG00000001401rpa19961.338ENSPANG00000024592RPA19961.526Papio_anubis
ENSHCOG00000001401rpa19966.069ENSPKIG00000008053rpa19865.267Paramormyrops_kingsleyae
ENSHCOG00000001401rpa19661.149ENSPSIG00000015617RPA19860.406Pelodiscus_sinensis
ENSHCOG00000001401rpa19954.045ENSPMGG00000000543RPA19957.118Periophthalmus_magnuspinnatus
ENSHCOG00000001401rpa19972.295ENSPMGG00000011589rpa19972.295Periophthalmus_magnuspinnatus
ENSHCOG00000001401rpa19960.417ENSPEMG00000021061Rpa19959.967Peromyscus_maniculatus_bairdii
ENSHCOG00000001401rpa19960.492ENSPCIG00000019049RPA19960.488Phascolarctos_cinereus
ENSHCOG00000001401rpa110074.551ENSPFOG00000003987rpa110074.715Poecilia_formosa
ENSHCOG00000001401rpa110074.388ENSPLAG00000004984rpa110074.551Poecilia_latipinna
ENSHCOG00000001401rpa19455.751ENSPLAG00000008844-9655.128Poecilia_latipinna
ENSHCOG00000001401rpa19456.006ENSPMEG00000003627-9654.808Poecilia_mexicana
ENSHCOG00000001401rpa110074.551ENSPMEG00000020602rpa110074.715Poecilia_mexicana
ENSHCOG00000001401rpa19367.368ENSPREG00000010174rpa19567.250Poecilia_reticulata
ENSHCOG00000001401rpa19955.224ENSPREG00000010119RPA18266.970Poecilia_reticulata
ENSHCOG00000001401rpa19961.712ENSPCOG00000001799RPA19961.463Propithecus_coquereli
ENSHCOG00000001401rpa19960.323ENSPVAG00000002149RPA19960.032Pteropus_vampyrus
ENSHCOG00000001401rpa19975.490ENSPNYG00000016316rpa19975.490Pundamilia_nyererei
ENSHCOG00000001401rpa19955.956ENSPNYG00000024165RPA19956.338Pundamilia_nyererei
ENSHCOG00000001401rpa19962.975ENSPNAG00000008599rpa19664.261Pygocentrus_nattereri
ENSHCOG00000001401rpa19665.700ENSRNOG00000003123Rpa19960.454Rattus_norvegicus
ENSHCOG00000001401rpa19961.364ENSRBIG00000036587RPA19961.039Rhinopithecus_bieti
ENSHCOG00000001401rpa19957.050ENSRROG00000043278RPA19956.726Rhinopithecus_roxellana
ENSHCOG00000001401rpa19731.967YAR007CRFA19731.691Saccharomyces_cerevisiae
ENSHCOG00000001401rpa19161.947ENSSBOG00000030233RPA19661.189Saimiri_boliviensis_boliviensis
ENSHCOG00000001401rpa19661.448ENSSHAG00000007969RPA19561.214Sarcophilus_harrisii
ENSHCOG00000001401rpa19971.522ENSSFOG00015005362rpa19270.164Scleropages_formosus
ENSHCOG00000001401rpa19954.351ENSSMAG00000019746RPA18365.604Scophthalmus_maximus
ENSHCOG00000001401rpa110075.530ENSSDUG00000011949rpa110075.530Seriola_dumerili
ENSHCOG00000001401rpa19953.116ENSSDUG00000016358RPA19263.946Seriola_dumerili
ENSHCOG00000001401rpa110075.530ENSSLDG00000011806rpa110075.530Seriola_lalandi_dorsalis
ENSHCOG00000001401rpa19952.786ENSSLDG00000020784RPA19163.657Seriola_lalandi_dorsalis
ENSHCOG00000001401rpa19649.917ENSSARG00000007506RPA19749.069Sorex_araneus
ENSHCOG00000001401rpa19759.160ENSSPUG00000007223RPA19858.992Sphenodon_punctatus
ENSHCOG00000001401rpa19857.072ENSSPAG00000011165RPA19954.886Stegastes_partitus
ENSHCOG00000001401rpa110074.715ENSSPAG00000009903rpa110074.715Stegastes_partitus
ENSHCOG00000001401rpa19960.098ENSSSCG00000017822RPA19862.000Sus_scrofa
ENSHCOG00000001401rpa19959.672ENSTGUG00000005775RPA19959.344Taeniopygia_guttata
ENSHCOG00000001401rpa19957.280ENSTRUG00000000405RPA19163.739Takifugu_rubripes
ENSHCOG00000001401rpa19974.262ENSTRUG00000003616rpa19973.934Takifugu_rubripes
ENSHCOG00000001401rpa110076.059ENSTNIG00000016199rpa19976.221Tetraodon_nigroviridis
ENSHCOG00000001401rpa17168.433ENSTBEG00000002709RPA17368.433Tupaia_belangeri
ENSHCOG00000001401rpa19960.064ENSTTRG00000001169RPA19960.096Tursiops_truncatus
ENSHCOG00000001401rpa18665.385ENSUAMG00000015676RPA19565.385Ursus_americanus
ENSHCOG00000001401rpa19960.458ENSUMAG00000009328RPA19960.784Ursus_maritimus
ENSHCOG00000001401rpa19959.740ENSVPAG00000009443RPA19959.420Vicugna_pacos
ENSHCOG00000001401rpa19961.175ENSVVUG00000021715RPA19960.848Vulpes_vulpes
ENSHCOG00000001401rpa19963.149ENSXETG00000013538rpa19963.934Xenopus_tropicalis
ENSHCOG00000001401rpa19557.633ENSXCOG00000009899-7966.059Xiphophorus_couchianus
ENSHCOG00000001401rpa19371.902ENSXCOG00000010068rpa19472.077Xiphophorus_couchianus
ENSHCOG00000001401rpa110072.757ENSXMAG00000004102rpa110073.730Xiphophorus_maculatus
ENSHCOG00000001401rpa19266.059ENSXMAG00000010333RPA17966.059Xiphophorus_maculatus

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