EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000001596 (Gene tree)
Gene ID: 109508241
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 4667 bases
Position: chrKV879793.1:2315654-2320320
Accession: 109508241
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000000723	zf-U1	PF06220.12	9.3e-23	1	1
ENSHCOP00000000730	zf-U1	PF06220.12	9.3e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000013294	-	849	XM_019858123	ENSHCOP00000000723	147 (aa)	XP_019713682	UPI00094ECA3C
ENSHCOT00000013290	-	843	XM_019858132	ENSHCOP00000000730	147 (aa)	XP_019713691	UPI00094ECA3C

Gene Model

Click here to download ENSHCOG00000001596's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001596's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001596	snrpc	100	96.622	ENSAPOG00000013907	snrpc	100	96.622	Acanthochromis_polyacanthus
ENSHCOG00000001596	snrpc	100	96.622	ENSAOCG00000021151	snrpc	100	96.622	Amphiprion_ocellaris
ENSHCOG00000001596	snrpc	100	96.622	ENSAPEG00000023221	snrpc	100	96.622	Amphiprion_percula
ENSHCOG00000001596	snrpc	100	96.622	ENSATEG00000025133	snrpc	100	96.622	Anabas_testudineus
ENSHCOG00000001596	snrpc	57	96.429	ENSACLG00000000843	snrpc	100	87.248	Astatotilapia_calliptera
ENSHCOG00000001596	snrpc	100	83.893	ENSCSEG00000016845	snrpc	100	95.973	Cynoglossus_semilaevis
ENSHCOG00000001596	snrpc	100	80.272	ENSCVAG00000014297	snrpc	100	80.272	Cyprinodon_variegatus
ENSHCOG00000001596	snrpc	57	96.429	ENSFHEG00000016667	snrpc	58	100.000	Fundulus_heteroclitus
ENSHCOG00000001596	snrpc	99	95.172	ENSGMOG00000000090	snrpc	100	95.172	Gadus_morhua
ENSHCOG00000001596	snrpc	100	80.272	ENSGAFG00000016115	snrpc	100	80.272	Gambusia_affinis
ENSHCOG00000001596	snrpc	99	85.616	ENSGACG00000004899	snrpc	98	91.781	Gasterosteus_aculeatus
ENSHCOG00000001596	snrpc	57	96.429	ENSHBUG00000011637	snrpc	100	87.248	Haplochromis_burtoni
ENSHCOG00000001596	snrpc	100	85.135	ENSKMAG00000016356	snrpc	100	91.216	Kryptolebias_marmoratus
ENSHCOG00000001596	snrpc	100	95.973	ENSLBEG00000023881	snrpc	100	95.973	Labrus_bergylta
ENSHCOG00000001596	snrpc	100	85.811	ENSMAMG00000003857	snrpc	100	91.892	Mastacembelus_armatus
ENSHCOG00000001596	snrpc	57	96.429	ENSMZEG00005002199	snrpc	100	87.248	Maylandia_zebra
ENSHCOG00000001596	snrpc	98	79.861	ENSMMOG00000013149	snrpc	100	79.861	Mola_mola
ENSHCOG00000001596	snrpc	100	95.918	ENSMALG00000001197	snrpc	100	95.918	Monopterus_albus
ENSHCOG00000001596	snrpc	57	96.429	ENSONIG00000014757	snrpc	100	87.248	Oreochromis_niloticus
ENSHCOG00000001596	snrpc	57	96.429	ENSOMEG00000012014	snrpc	86	87.919	Oryzias_melastigma
ENSHCOG00000001596	snrpc	99	83.448	ENSPMGG00000022162	snrpc	100	79.167	Periophthalmus_magnuspinnatus
ENSHCOG00000001596	snrpc	100	80.272	ENSPFOG00000015174	snrpc	100	80.272	Poecilia_formosa
ENSHCOG00000001596	snrpc	100	80.272	ENSPLAG00000012311	snrpc	100	80.272	Poecilia_latipinna
ENSHCOG00000001596	snrpc	100	80.272	ENSPMEG00000010274	snrpc	100	80.272	Poecilia_mexicana
ENSHCOG00000001596	snrpc	100	96.622	ENSSMAG00000008029	snrpc	100	96.622	Scophthalmus_maximus
ENSHCOG00000001596	snrpc	100	96.622	ENSSDUG00000018895	snrpc	81	96.622	Seriola_dumerili
ENSHCOG00000001596	snrpc	100	96.622	ENSSLDG00000005034	snrpc	100	96.622	Seriola_lalandi_dorsalis
ENSHCOG00000001596	snrpc	100	96.622	ENSSPAG00000000914	snrpc	100	96.622	Stegastes_partitus
ENSHCOG00000001596	snrpc	100	90.476	ENSTRUG00000021651	snrpc	100	90.476	Takifugu_rubripes
ENSHCOG00000001596	snrpc	98	74.306	ENSXCOG00000015871	-	100	76.389	Xiphophorus_couchianus
ENSHCOG00000001596	snrpc	100	80.272	ENSXMAG00000017935	snrpc	100	80.272	Xiphophorus_maculatus