EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000001898 (Gene tree)
Gene ID
109521684
Gene Symbol
patl1
Alias
fa11d04|wu:fa11d04|zgc:158239
Full Name
PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
40354 bases
Position
chrKV880113.1:1956121-1996474
Accession
109521684
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000000987PAT1PF09770.91.4e-1211
ENSHCOP00000000993PAT1PF09770.94.8e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000012849-2945XM_019879691ENSHCOP00000000993823 (aa)XP_019735250UPI00094E3E8F
ENSHCOT00000012862-2836-ENSHCOP00000000987794 (aa)--
Gene Model
Click here to download ENSHCOG00000001898's gene model file
Pathways
Pathway IDPathway NameSource
hcq03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001898's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000001898patl15135.294ENSHCOG00000016754patl25435.768
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000001898patl18254.430ENSG00000166889PATL19265.000Homo_sapiens
ENSHCOG00000001898patl15335.698ENSG00000229474PATL29937.158Homo_sapiens
ENSHCOG00000001898patl18979.661ENSAPOG00000021290patl19981.638Acanthochromis_polyacanthus
ENSHCOG00000001898patl15135.613ENSAPOG00000022988patl25836.364Acanthochromis_polyacanthus
ENSHCOG00000001898patl18254.430ENSAMEG00000014215PATL19265.000Ailuropoda_melanoleuca
ENSHCOG00000001898patl15734.756ENSAMEG00000014997PATL27536.842Ailuropoda_melanoleuca
ENSHCOG00000001898patl19974.209ENSACIG00000005182patl19792.105Amphilophus_citrinellus
ENSHCOG00000001898patl19876.834ENSAOCG00000021993patl19577.721Amphiprion_ocellaris
ENSHCOG00000001898patl15333.929ENSAOCG00000023738patl25134.937Amphiprion_ocellaris
ENSHCOG00000001898patl110078.375ENSAPEG00000021391patl110080.336Amphiprion_percula
ENSHCOG00000001898patl15333.705ENSAPEG00000011299patl26134.684Amphiprion_percula
ENSHCOG00000001898patl110079.614ENSATEG00000002230patl110080.385Anabas_testudineus
ENSHCOG00000001898patl15934.292ENSATEG00000019567patl26036.020Anabas_testudineus
ENSHCOG00000001898patl15346.996ENSAPLG00000013394PATL19345.396Anas_platyrhynchos
ENSHCOG00000001898patl17955.128ENSACAG00000006607PATL18962.712Anolis_carolinensis
ENSHCOG00000001898patl15335.440ENSANAG00000022701PATL27237.284Aotus_nancymaae
ENSHCOG00000001898patl18254.430ENSANAG00000023078PATL19265.000Aotus_nancymaae
ENSHCOG00000001898patl110079.663ENSACLG00000005144patl110080.505Astatotilapia_calliptera
ENSHCOG00000001898patl15336.735ENSAMXG00000020293patl25736.341Astyanax_mexicanus
ENSHCOG00000001898patl19583.166ENSAMXG00000010731patl19985.714Astyanax_mexicanus
ENSHCOG00000001898patl18254.430ENSBTAG00000005913PATL19265.000Bos_taurus
ENSHCOG00000001898patl18254.430ENSCJAG00000016192PATL19265.000Callithrix_jacchus
ENSHCOG00000001898patl15334.234ENSCJAG00000002379PATL27236.675Callithrix_jacchus
ENSHCOG00000001898patl18254.430ENSCAFG00000007581PATL19265.000Canis_familiaris
ENSHCOG00000001898patl15036.650ENSCAFG00000013629PATL27237.406Canis_familiaris
ENSHCOG00000001898patl15036.893ENSCAFG00020022169PATL27237.157Canis_lupus_dingo
ENSHCOG00000001898patl18254.430ENSCAFG00020001648PATL19265.000Canis_lupus_dingo
ENSHCOG00000001898patl15436.712ENSCHIG00000026665PATL27338.095Capra_hircus
ENSHCOG00000001898patl18254.430ENSCHIG00000025913PATL19454.430Capra_hircus
ENSHCOG00000001898patl15335.294ENSTSYG00000032456PATL27236.160Carlito_syrichta
ENSHCOG00000001898patl18354.430ENSTSYG00000012748PATL18965.000Carlito_syrichta
ENSHCOG00000001898patl18258.025ENSCAPG00000013668PATL19455.696Cavia_aperea
ENSHCOG00000001898patl18258.025ENSCPOG00000006827PATL16255.696Cavia_porcellus
ENSHCOG00000001898patl18254.430ENSCCAG00000023759PATL19265.000Cebus_capucinus
ENSHCOG00000001898patl15135.550ENSCATG00000034794PATL29937.158Cercocebus_atys
ENSHCOG00000001898patl18254.430ENSCATG00000009629PATL19265.000Cercocebus_atys
ENSHCOG00000001898patl18156.338ENSCLAG00000003427PATL19456.338Chinchilla_lanigera
ENSHCOG00000001898patl17548.702ENSCSAG00000006095PATL19348.171Chlorocebus_sabaeus
ENSHCOG00000001898patl16158.586ENSCHOG00000001611PATL18159.794Choloepus_hoffmanni
ENSHCOG00000001898patl15338.106ENSCPBG00000006150PATL26039.268Chrysemys_picta_bellii
ENSHCOG00000001898patl18253.846ENSCANG00000039197PATL19264.407Colobus_angolensis_palliatus
ENSHCOG00000001898patl15335.484ENSCANG00000013856PATL27237.313Colobus_angolensis_palliatus
ENSHCOG00000001898patl15034.679ENSCGRG00001010801Patl27336.074Cricetulus_griseus_chok1gshd
ENSHCOG00000001898patl18253.165ENSCGRG00001024927Patl19165.000Cricetulus_griseus_chok1gshd
ENSHCOG00000001898patl15034.679ENSCGRG00000013007Patl27336.074Cricetulus_griseus_crigri
ENSHCOG00000001898patl18251.899ENSCGRG00000000461Patl19165.385Cricetulus_griseus_crigri
ENSHCOG00000001898patl15233.411ENSCSEG00000009438patl25733.838Cynoglossus_semilaevis
ENSHCOG00000001898patl110076.675ENSCSEG00000008261patl110077.512Cynoglossus_semilaevis
ENSHCOG00000001898patl18978.752ENSCVAG00000006664patl18687.805Cyprinodon_variegatus
ENSHCOG00000001898patl15132.927ENSCVAG00000016203patl26133.249Cyprinodon_variegatus
ENSHCOG00000001898patl110068.848ENSDARG00000017423patl110067.545Danio_rerio
ENSHCOG00000001898patl15036.364ENSDNOG00000036837PATL26736.973Dasypus_novemcinctus
ENSHCOG00000001898patl18153.521ENSDNOG00000038865PATL19946.520Dasypus_novemcinctus
ENSHCOG00000001898patl18255.696ENSDORG00000000237Patl19266.667Dipodomys_ordii
ENSHCOG00000001898patl18454.430ENSEASG00005007963PATL19465.000Equus_asinus_asinus
ENSHCOG00000001898patl15333.793ENSEASG00005017984PATL27035.176Equus_asinus_asinus
ENSHCOG00000001898patl15334.763ENSECAG00000013462PATL27135.910Equus_caballus
ENSHCOG00000001898patl18454.430ENSECAG00000011411PATL19465.000Equus_caballus
ENSHCOG00000001898patl16133.929ENSELUG00000023244patl25436.616Esox_lucius
ENSHCOG00000001898patl110070.758ENSELUG00000024249patl110070.446Esox_lucius
ENSHCOG00000001898patl15335.388ENSFCAG00000027170PATL27336.750Felis_catus
ENSHCOG00000001898patl18254.430ENSFCAG00000015573PATL19265.000Felis_catus
ENSHCOG00000001898patl16135.490ENSFALG00000009768PATL25537.656Ficedula_albicollis
ENSHCOG00000001898patl18450.304ENSFALG00000012150PATL19264.286Ficedula_albicollis
ENSHCOG00000001898patl18153.521ENSFDAG00000016128PATL19165.385Fukomys_damarensis
ENSHCOG00000001898patl19977.384ENSFHEG00000017790patl110077.262Fundulus_heteroclitus
ENSHCOG00000001898patl15234.396ENSGMOG00000005666patl210036.077Gadus_morhua
ENSHCOG00000001898patl15636.211ENSGALG00000002167PATL25037.408Gallus_gallus
ENSHCOG00000001898patl18050.549ENSGALG00000042641PATL19066.667Gallus_gallus
ENSHCOG00000001898patl15035.941ENSGAFG00000019344patl25536.456Gambusia_affinis
ENSHCOG00000001898patl110076.840ENSGAFG00000006508patl110075.601Gambusia_affinis
ENSHCOG00000001898patl19965.452ENSGACG00000016448patl19969.929Gasterosteus_aculeatus
ENSHCOG00000001898patl18256.962ENSGAGG00000004461PATL19266.667Gopherus_agassizii
ENSHCOG00000001898patl18254.430ENSGGOG00000004335PATL19265.000Gorilla_gorilla
ENSHCOG00000001898patl15335.321ENSGGOG00000025923PATL27237.129Gorilla_gorilla
ENSHCOG00000001898patl110079.663ENSHBUG00000005365patl110080.746Haplochromis_burtoni
ENSHCOG00000001898patl18255.696ENSHGLG00000018173PATL19266.667Heterocephalus_glaber_female
ENSHCOG00000001898patl17953.968ENSHGLG00100003453PATL19260.417Heterocephalus_glaber_male
ENSHCOG00000001898patl15335.586ENSSTOG00000033848PATL27237.284Ictidomys_tridecemlineatus
ENSHCOG00000001898patl18156.522ENSSTOG00000013764PATL19170.000Ictidomys_tridecemlineatus
ENSHCOG00000001898patl18154.930ENSJJAG00000010135Patl19167.308Jaculus_jaculus
ENSHCOG00000001898patl15135.109ENSKMAG00000021275patl25435.354Kryptolebias_marmoratus
ENSHCOG00000001898patl110078.486ENSKMAG00000020848patl110078.391Kryptolebias_marmoratus
ENSHCOG00000001898patl110081.916ENSLBEG00000023617patl110082.156Labrus_bergylta
ENSHCOG00000001898patl17569.811ENSLACG00000004640PATL18973.469Latimeria_chalumnae
ENSHCOG00000001898patl17531.442ENSLACG00000005291-5336.740Latimeria_chalumnae
ENSHCOG00000001898patl110060.071ENSLOCG00000000717patl110060.308Lepisosteus_oculatus
ENSHCOG00000001898patl18254.430ENSLAFG00000015161PATL19265.000Loxodonta_africana
ENSHCOG00000001898patl15335.927ENSMFAG00000003565PATL27237.778Macaca_fascicularis
ENSHCOG00000001898patl18254.430ENSMFAG00000040851PATL19265.000Macaca_fascicularis
ENSHCOG00000001898patl18254.430ENSMMUG00000017287PATL19265.000Macaca_mulatta
ENSHCOG00000001898patl15135.550ENSMNEG00000034510PATL27237.778Macaca_nemestrina
ENSHCOG00000001898patl18254.430ENSMNEG00000038692PATL19265.000Macaca_nemestrina
ENSHCOG00000001898patl18254.430ENSMLEG00000030044PATL19265.000Mandrillus_leucophaeus
ENSHCOG00000001898patl15335.550ENSMLEG00000042248PATL27237.376Mandrillus_leucophaeus
ENSHCOG00000001898patl110079.760ENSMAMG00000003950patl110079.880Mastacembelus_armatus
ENSHCOG00000001898patl15134.305ENSMAMG00000013327patl26036.111Mastacembelus_armatus
ENSHCOG00000001898patl110079.783ENSMZEG00005013404patl110080.505Maylandia_zebra
ENSHCOG00000001898patl17450.575ENSMGAG00000003406PATL18967.857Meleagris_gallopavo
ENSHCOG00000001898patl15734.244ENSMAUG00000001008Patl27436.476Mesocricetus_auratus
ENSHCOG00000001898patl17544.671ENSMAUG00000012059Patl18542.410Mesocricetus_auratus
ENSHCOG00000001898patl18254.430ENSMICG00000004172PATL18965.000Microcebus_murinus
ENSHCOG00000001898patl18253.165ENSMOCG00000010087Patl19453.165Microtus_ochrogaster
ENSHCOG00000001898patl18080.139ENSMMOG00000013711patl19780.174Mola_mola
ENSHCOG00000001898patl18066.667ENSMODG00000020201PATL19266.667Monodelphis_domestica
ENSHCOG00000001898patl15335.604ENSMODG00000017690PATL27036.983Monodelphis_domestica
ENSHCOG00000001898patl19870.732ENSMALG00000018706patl110071.923Monopterus_albus
ENSHCOG00000001898patl18454.430MGP_CAROLIEiJ_G0022739Patl19465.000Mus_caroli
ENSHCOG00000001898patl18254.430ENSMUSG00000046139Patl19265.000Mus_musculus
ENSHCOG00000001898patl18254.430MGP_PahariEiJ_G0014233Patl19265.000Mus_pahari
ENSHCOG00000001898patl18254.430MGP_SPRETEiJ_G0023652Patl19265.000Mus_spretus
ENSHCOG00000001898patl18254.430ENSMPUG00000014607PATL19265.000Mustela_putorius_furo
ENSHCOG00000001898patl18254.430ENSMLUG00000011169PATL19165.000Myotis_lucifugus
ENSHCOG00000001898patl18255.128ENSNGAG00000003682Patl19165.000Nannospalax_galili
ENSHCOG00000001898patl16689.091ENSNBRG00000015372patl19350.668Neolamprologus_brichardi
ENSHCOG00000001898patl15034.988ENSNBRG00000011745patl25736.111Neolamprologus_brichardi
ENSHCOG00000001898patl18354.430ENSNLEG00000013081PATL19365.000Nomascus_leucogenys
ENSHCOG00000001898patl15335.698ENSNLEG00000005673PATL27337.531Nomascus_leucogenys
ENSHCOG00000001898patl16057.692ENSMEUG00000009391PATL17357.325Notamacropus_eugenii
ENSHCOG00000001898patl16453.906ENSOPRG00000007963PATL17852.513Ochotona_princeps
ENSHCOG00000001898patl15348.804ENSODEG00000001792PATL17054.777Octodon_degus
ENSHCOG00000001898patl17231.904ENSONIG00000011519patl25336.020Oreochromis_niloticus
ENSHCOG00000001898patl110078.890ENSONIG00000004170patl110080.723Oreochromis_niloticus
ENSHCOG00000001898patl15334.773ENSOCUG00000006339PATL27436.962Oryctolagus_cuniculus
ENSHCOG00000001898patl18254.430ENSOCUG00000002156PATL19265.000Oryctolagus_cuniculus
ENSHCOG00000001898patl18089.831ENSORLG00015022240patl18494.444Oryzias_latipes_hsok
ENSHCOG00000001898patl15135.194ENSOMEG00000021628patl25635.443Oryzias_melastigma
ENSHCOG00000001898patl18254.430ENSOGAG00000004351PATL19265.000Otolemur_garnettii
ENSHCOG00000001898patl15335.321ENSOGAG00000004709PATL27236.181Otolemur_garnettii
ENSHCOG00000001898patl18153.521ENSOARG00000012005PATL19053.521Ovis_aries
ENSHCOG00000001898patl15435.435ENSOARG00000003762PATL27136.990Ovis_aries
ENSHCOG00000001898patl15335.616ENSPPAG00000007221PATL27137.129Pan_paniscus
ENSHCOG00000001898patl18254.430ENSPPAG00000034275PATL19265.000Pan_paniscus
ENSHCOG00000001898patl18153.521ENSPPRG00000020639PATL19165.385Panthera_pardus
ENSHCOG00000001898patl15334.932ENSPPRG00000004279PATL27336.250Panthera_pardus
ENSHCOG00000001898patl15335.160ENSPTIG00000018964PATL27336.500Panthera_tigris_altaica
ENSHCOG00000001898patl18254.430ENSPTIG00000019298PATL19265.000Panthera_tigris_altaica
ENSHCOG00000001898patl15335.698ENSPTRG00000041536PATL27137.129Pan_troglodytes
ENSHCOG00000001898patl18254.430ENSPTRG00000003697PATL19265.000Pan_troglodytes
ENSHCOG00000001898patl15135.550ENSPANG00000018026PATL27237.778Papio_anubis
ENSHCOG00000001898patl18254.430ENSPANG00000035620PATL19265.000Papio_anubis
ENSHCOG00000001898patl110069.053ENSPKIG00000016224patl110068.447Paramormyrops_kingsleyae
ENSHCOG00000001898patl15037.500ENSPKIG00000016887patl25537.500Paramormyrops_kingsleyae
ENSHCOG00000001898patl18555.696ENSPSIG00000016206PATL19065.000Pelodiscus_sinensis
ENSHCOG00000001898patl15233.333ENSPSIG00000017690PATL29634.447Pelodiscus_sinensis
ENSHCOG00000001898patl15633.475ENSPMGG00000014550patl26234.848Periophthalmus_magnuspinnatus
ENSHCOG00000001898patl110073.729ENSPMGG00000002644patl110074.396Periophthalmus_magnuspinnatus
ENSHCOG00000001898patl18253.165ENSPEMG00000014215Patl19165.000Peromyscus_maniculatus_bairdii
ENSHCOG00000001898patl15434.755ENSPCIG00000018256PATL27637.186Phascolarctos_cinereus
ENSHCOG00000001898patl18255.696ENSPCIG00000010852PATL19266.667Phascolarctos_cinereus
ENSHCOG00000001898patl110075.485ENSPFOG00000007768patl110075.485Poecilia_formosa
ENSHCOG00000001898patl16633.333ENSPFOG00000007305patl25436.203Poecilia_formosa
ENSHCOG00000001898patl16633.147ENSPLAG00000020713patl25436.203Poecilia_latipinna
ENSHCOG00000001898patl110076.145ENSPLAG00000018465patl110075.783Poecilia_latipinna
ENSHCOG00000001898patl110076.506ENSPMEG00000006555patl110075.422Poecilia_mexicana
ENSHCOG00000001898patl16633.333ENSPMEG00000018942patl25436.203Poecilia_mexicana
ENSHCOG00000001898patl19074.198ENSPREG00000003874patl19573.423Poecilia_reticulata
ENSHCOG00000001898patl18254.430ENSPPYG00000003230PATL19265.000Pongo_abelii
ENSHCOG00000001898patl18254.430ENSPCOG00000020770PATL19265.000Propithecus_coquereli
ENSHCOG00000001898patl15037.260ENSPCOG00000000295PATL29938.378Propithecus_coquereli
ENSHCOG00000001898patl17547.149ENSPVAG00000015239PATL19946.615Pteropus_vampyrus
ENSHCOG00000001898patl18690.994ENSPNYG00000018936patl110067.840Pundamilia_nyererei
ENSHCOG00000001898patl15136.066ENSPNAG00000002315patl25736.842Pygocentrus_nattereri
ENSHCOG00000001898patl110069.602ENSPNAG00000017907patl110070.384Pygocentrus_nattereri
ENSHCOG00000001898patl18254.430ENSRNOG00000021052Patl19265.000Rattus_norvegicus
ENSHCOG00000001898patl18254.430ENSRBIG00000032263PATL19265.000Rhinopithecus_bieti
ENSHCOG00000001898patl18254.430ENSRROG00000032861PATL19265.000Rhinopithecus_roxellana
ENSHCOG00000001898patl18254.430ENSSBOG00000025195PATL19265.000Saimiri_boliviensis_boliviensis
ENSHCOG00000001898patl18066.667ENSSHAG00000004309PATL19266.667Sarcophilus_harrisii
ENSHCOG00000001898patl110068.811ENSSFOG00015009614patl110068.644Scleropages_formosus
ENSHCOG00000001898patl110077.911ENSSMAG00000009482patl110080.312Scophthalmus_maximus
ENSHCOG00000001898patl15134.928ENSSMAG00000017262patl26335.369Scophthalmus_maximus
ENSHCOG00000001898patl110079.929ENSSDUG00000005362patl110080.166Seriola_dumerili
ENSHCOG00000001898patl15135.849ENSSDUG00000022927patl25436.616Seriola_dumerili
ENSHCOG00000001898patl110079.548ENSSLDG00000019146patl110079.786Seriola_lalandi_dorsalis
ENSHCOG00000001898patl15135.782ENSSLDG00000017922patl25936.272Seriola_lalandi_dorsalis
ENSHCOG00000001898patl15949.524ENSSARG00000009600PATL16848.289Sorex_araneus
ENSHCOG00000001898patl17970.000ENSSPUG00000009453PATL19170.000Sphenodon_punctatus
ENSHCOG00000001898patl19976.248ENSSPAG00000003187patl19976.098Stegastes_partitus
ENSHCOG00000001898patl15134.053ENSSPAG00000004784patl26134.257Stegastes_partitus
ENSHCOG00000001898patl18254.430ENSSSCG00000013124PATL19265.000Sus_scrofa
ENSHCOG00000001898patl18064.286ENSTGUG00000006222PATL19364.286Taeniopygia_guttata
ENSHCOG00000001898patl110067.981ENSTRUG00000000709patl110066.947Takifugu_rubripes
ENSHCOG00000001898patl17249.296ENSTBEG00000000796PATL18259.615Tupaia_belangeri
ENSHCOG00000001898patl16853.205ENSTTRG00000009389PATL18352.866Tursiops_truncatus
ENSHCOG00000001898patl15534.368ENSUAMG00000018533PATL27136.228Ursus_americanus
ENSHCOG00000001898patl17960.000ENSUMAG00000018634PATL19180.556Ursus_maritimus
ENSHCOG00000001898patl15534.658ENSUMAG00000007738PATL27136.228Ursus_maritimus
ENSHCOG00000001898patl18253.165ENSVVUG00000016668PATL19163.333Vulpes_vulpes
ENSHCOG00000001898patl15535.982ENSVVUG00000011576PATL27237.811Vulpes_vulpes
ENSHCOG00000001898patl16989.831ENSXCOG00000010808patl19991.071Xiphophorus_couchianus
ENSHCOG00000001898patl110075.841ENSXMAG00000013834patl110075.210Xiphophorus_maculatus
ENSHCOG00000001898patl15235.308ENSXMAG00000018464patl25436.203Xiphophorus_maculatus

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