EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000001951 (Gene tree)
Gene ID: 109517174
Gene Symbol: setd1ba
Alias: im:7156157|si:dkey-237o15.4
Full Name: SET domain containing 1B
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 14274 bases
Position: chrKV880000.1:7408-21681
Accession: 109517174
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000001040	RRM_1	PF00076.22	8.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000012769	-	5457	XM_019872165	ENSHCOP00000001040	1818 (aa)	XP_019727724	-

Gene Model

Click here to download ENSHCOG00000001951's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq00310	Lysine degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000001951's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000001951	setd1ba	60	62.857	ENSHCOG00000003119	setd1a	67	61.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000001951	setd1ba	56	82.111	ENSAPOG00000014731	setd1ba	100	78.107	Acanthochromis_polyacanthus
ENSHCOG00000001951	setd1ba	99	70.153	ENSACIG00000016453	setd1ba	100	71.795	Amphilophus_citrinellus
ENSHCOG00000001951	setd1ba	96	75.944	ENSAOCG00000012148	setd1ba	99	77.444	Amphiprion_ocellaris
ENSHCOG00000001951	setd1ba	99	74.986	ENSAPEG00000010762	setd1ba	99	75.851	Amphiprion_percula
ENSHCOG00000001951	setd1ba	90	78.406	ENSATEG00000021563	setd1ba	100	80.000	Anabas_testudineus
ENSHCOG00000001951	setd1ba	86	56.528	ENSAPLG00000005217	SETD1B	85	56.528	Anas_platyrhynchos
ENSHCOG00000001951	setd1ba	50	71.045	ENSCHIG00000013406	SETD1B	86	57.561	Capra_hircus
ENSHCOG00000001951	setd1ba	57	75.801	ENSTSYG00000033777	SETD1B	58	54.514	Carlito_syrichta
ENSHCOG00000001951	setd1ba	52	78.107	ENSCLAG00000013200	SETD1B	70	78.507	Chinchilla_lanigera
ENSHCOG00000001951	setd1ba	78	52.993	ENSCPBG00000026067	SETD1B	89	55.660	Chrysemys_picta_bellii
ENSHCOG00000001951	setd1ba	67	66.426	ENSCANG00000023445	SETD1B	75	64.912	Colobus_angolensis_palliatus
ENSHCOG00000001951	setd1ba	56	82.903	ENSCGRG00000018075	Setd1b	69	79.104	Cricetulus_griseus_crigri
ENSHCOG00000001951	setd1ba	58	71.753	ENSELUG00000022712	-	72	67.568	Esox_lucius
ENSHCOG00000001951	setd1ba	52	79.104	ENSFALG00000009136	SETD1B	90	56.023	Ficedula_albicollis
ENSHCOG00000001951	setd1ba	53	87.462	ENSGMOG00000009831	setd1ba	59	87.462	Gadus_morhua
ENSHCOG00000001951	setd1ba	54	78.824	ENSGALG00000004324	SETD1B	85	55.042	Gallus_gallus
ENSHCOG00000001951	setd1ba	88	76.519	ENSGAFG00000008712	setd1ba	99	70.665	Gambusia_affinis
ENSHCOG00000001951	setd1ba	87	75.851	ENSGACG00000017002	setd1ba	94	75.851	Gasterosteus_aculeatus
ENSHCOG00000001951	setd1ba	61	49.007	ENSGAGG00000025013	SETD1B	85	56.696	Gopherus_agassizii
ENSHCOG00000001951	setd1ba	50	66.242	ENSSTOG00000005369	SETD1A	64	65.831	Ictidomys_tridecemlineatus
ENSHCOG00000001951	setd1ba	55	75.349	ENSKMAG00000007804	setd1ba	99	72.159	Kryptolebias_marmoratus
ENSHCOG00000001951	setd1ba	99	72.316	ENSLBEG00000020113	setd1ba	55	76.779	Labrus_bergylta
ENSHCOG00000001951	setd1ba	70	77.204	ENSLAFG00000026518	SETD1B	84	58.305	Loxodonta_africana
ENSHCOG00000001951	setd1ba	59	66.559	ENSMLEG00000030176	SETD1A	64	66.458	Mandrillus_leucophaeus
ENSHCOG00000001951	setd1ba	99	76.234	ENSMAMG00000011027	setd1ba	100	77.509	Mastacembelus_armatus
ENSHCOG00000001951	setd1ba	64	52.707	ENSMGAG00000004421	SETD1B	68	78.592	Meleagris_gallopavo
ENSHCOG00000001951	setd1ba	99	75.351	ENSMMOG00000008190	setd1ba	99	76.183	Mola_mola
ENSHCOG00000001951	setd1ba	99	76.075	ENSMALG00000005362	setd1ba	100	76.572	Monopterus_albus
ENSHCOG00000001951	setd1ba	99	73.027	ENSNBRG00000002915	setd1ba	99	74.811	Neolamprologus_brichardi
ENSHCOG00000001951	setd1ba	69	76.901	ENSODEG00000010155	SETD1B	89	76.901	Octodon_degus
ENSHCOG00000001951	setd1ba	67	77.515	ENSOCUG00000017708	SETD1B	69	77.910	Oryctolagus_cuniculus
ENSHCOG00000001951	setd1ba	99	72.826	ENSORLG00000008435	setd1ba	100	73.341	Oryzias_latipes
ENSHCOG00000001951	setd1ba	99	72.589	ENSORLG00020017079	setd1ba	100	73.330	Oryzias_latipes_hni
ENSHCOG00000001951	setd1ba	65	72.431	ENSORLG00015004156	setd1ba	99	72.654	Oryzias_latipes_hsok
ENSHCOG00000001951	setd1ba	99	72.099	ENSOMEG00000002270	setd1ba	100	72.423	Oryzias_melastigma
ENSHCOG00000001951	setd1ba	65	77.616	ENSPPRG00000021041	SETD1B	72	77.616	Panthera_pardus
ENSHCOG00000001951	setd1ba	88	77.243	ENSPMGG00000011527	setd1ba	92	77.243	Periophthalmus_magnuspinnatus
ENSHCOG00000001951	setd1ba	55	74.339	ENSPFOG00000019768	setd1ba	100	72.576	Poecilia_formosa
ENSHCOG00000001951	setd1ba	99	74.716	ENSPNYG00000009484	setd1ba	99	75.135	Pundamilia_nyererei
ENSHCOG00000001951	setd1ba	53	70.710	ENSRNOG00000001337	Setd1b	67	71.045	Rattus_norvegicus
ENSHCOG00000001951	setd1ba	62	78.402	ENSSBOG00000033322	SETD1B	68	78.806	Saimiri_boliviensis_boliviensis
ENSHCOG00000001951	setd1ba	58	88.312	ENSSFOG00015004814	SETD1B	93	71.622	Scleropages_formosus
ENSHCOG00000001951	setd1ba	99	71.781	ENSSMAG00000001244	setd1ba	99	72.708	Scophthalmus_maximus
ENSHCOG00000001951	setd1ba	55	82.681	ENSSLDG00000015543	setd1ba	99	78.309	Seriola_lalandi_dorsalis
ENSHCOG00000001951	setd1ba	67	53.556	ENSSPUG00000011847	SETD1B	88	55.483	Sphenodon_punctatus
ENSHCOG00000001951	setd1ba	99	77.646	ENSSPAG00000015470	setd1ba	100	78.888	Stegastes_partitus
ENSHCOG00000001951	setd1ba	67	78.529	ENSSSCG00000009806	SETD1B	90	61.062	Sus_scrofa
ENSHCOG00000001951	setd1ba	52	79.403	ENSTGUG00000006093	-	85	56.184	Taeniopygia_guttata
ENSHCOG00000001951	setd1ba	99	72.419	ENSTNIG00000009090	setd1ba	100	72.338	Tetraodon_nigroviridis
ENSHCOG00000001951	setd1ba	67	77.616	ENSUAMG00000008729	SETD1B	64	77.616	Ursus_americanus
ENSHCOG00000001951	setd1ba	66	54.436	ENSXETG00000003760	setd1b	84	56.693	Xenopus_tropicalis