EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000002546 (Gene tree)
Gene ID: 109508186
Gene Symbol: -
Alias: -
Full Name: RNA binding protein with serine rich domain 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3794 bases
Position: chrKV879793.1:600011-603804
Accession: 109508186
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000001571	RRM_1	PF00076.22	6.3e-17	1	1
ENSHCOP00000001572	RRM_1	PF00076.22	6.4e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000011876	-	1786	XM_019858069	ENSHCOP00000001572	257 (aa)	XP_019713628	UPI00094E8A80
ENSHCOT00000011875	-	1081	-	ENSHCOP00000001571	257 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000002546's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000002546's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000002546	-	82	65.066	ENSAMXG00000006330	-	82	63.319	Astyanax_mexicanus
ENSHCOG00000002546	-	53	73.333	ENSCATG00000042361	-	69	72.028	Cercocebus_atys
ENSHCOG00000002546	-	96	60.219	ENSCSAG00000005219	-	81	58.921	Chlorocebus_sabaeus
ENSHCOG00000002546	-	82	71.041	ENSGACG00000005641	-	82	74.661	Gasterosteus_aculeatus
ENSHCOG00000002546	-	84	63.182	ENSSTOG00000013200	RNPS1	83	63.182	Ictidomys_tridecemlineatus
ENSHCOG00000002546	-	84	56.652	ENSJJAG00000019234	-	68	55.794	Jaculus_jaculus
ENSHCOG00000002546	-	51	71.756	ENSJJAG00000000532	-	62	72.441	Jaculus_jaculus
ENSHCOG00000002546	-	53	72.794	ENSMMUG00000041726	-	84	54.393	Macaca_mulatta
ENSHCOG00000002546	-	53	72.794	ENSMNEG00000024827	-	84	54.812	Macaca_nemestrina
ENSHCOG00000002546	-	72	52.657	ENSMLEG00000040232	-	81	53.140	Mandrillus_leucophaeus
ENSHCOG00000002546	-	51	67.669	ENSMOCG00000000276	-	69	51.000	Microtus_ochrogaster
ENSHCOG00000002546	-	50	74.219	ENSNLEG00000009243	RNPS1	88	56.621	Nomascus_leucogenys
ENSHCOG00000002546	-	61	52.229	ENSODEG00000002513	-	53	48.361	Octodon_degus
ENSHCOG00000002546	-	58	68.919	ENSPTIG00000015643	RNPS1	63	77.311	Panthera_tigris_altaica
ENSHCOG00000002546	-	58	68.243	ENSPCIG00000016114	-	61	74.400	Phascolarctos_cinereus
ENSHCOG00000002546	-	82	63.755	ENSPNAG00000025479	RNPS1	82	64.192	Pygocentrus_nattereri
ENSHCOG00000002546	-	52	69.173	ENSRNOG00000027239	AABR07037800.1	71	55.814	Rattus_norvegicus
ENSHCOG00000002546	-	57	55.479	ENSSFOG00015019341	-	73	62.500	Scleropages_formosus
ENSHCOG00000002546	-	50	78.125	ENSTBEG00000009098	RNPS1	88	58.750	Tupaia_belangeri