EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000002664 (Gene tree)
Gene ID: 109513727
Gene Symbol: casc3
Alias: -
Full Name: CASC3%2C exon junction complex subunit
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 6317 bases
Position: chrKV879869.1:1223011-1229327
Accession: 109513727
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018263	Btz	PF09405.10	2.6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000011709	-	3892	XM_019866347	ENSHCOP00000018263	707 (aa)	XP_019721906	UPI00094F3535

Gene Model

Click here to download ENSHCOG00000002664's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000002664's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000002664	casc3	94	60.000	ENSAPOG00000008467	casc3	100	63.380	Acanthochromis_polyacanthus
ENSHCOG00000002664	casc3	95	61.321	ENSAOCG00000016676	casc3	100	63.742	Amphiprion_ocellaris
ENSHCOG00000002664	casc3	95	61.653	ENSAPEG00000006787	casc3	100	64.202	Amphiprion_percula
ENSHCOG00000002664	casc3	95	62.584	ENSATEG00000017196	casc3	100	63.578	Anabas_testudineus
ENSHCOG00000002664	casc3	62	56.132	ENSANAG00000031954	-	97	58.019	Aotus_nancymaae
ENSHCOG00000002664	casc3	73	50.376	ENSANAG00000034820	-	81	51.880	Aotus_nancymaae
ENSHCOG00000002664	casc3	94	62.842	ENSACLG00000016198	casc3	100	64.185	Astatotilapia_calliptera
ENSHCOG00000002664	casc3	99	55.339	ENSAMXG00000032452	casc3	98	53.916	Astyanax_mexicanus
ENSHCOG00000002664	casc3	76	48.136	ENSCAFG00020018882	CASC3	90	47.902	Canis_lupus_dingo
ENSHCOG00000002664	casc3	99	41.851	ENSCCAG00000033620	CASC3	98	42.353	Cebus_capucinus
ENSHCOG00000002664	casc3	99	42.416	ENSCPBG00000004750	CASC3	53	46.429	Chrysemys_picta_bellii
ENSHCOG00000002664	casc3	100	57.179	ENSCSEG00000010047	casc3	100	58.105	Cynoglossus_semilaevis
ENSHCOG00000002664	casc3	95	59.944	ENSCVAG00000014935	casc3	100	62.665	Cyprinodon_variegatus
ENSHCOG00000002664	casc3	99	55.097	ENSDARG00000029911	casc3	98	55.959	Danio_rerio
ENSHCOG00000002664	casc3	99	41.956	ENSETEG00000013720	CASC3	98	42.632	Echinops_telfairi
ENSHCOG00000002664	casc3	71	41.429	ENSEBUG00000010654	casc3	63	42.466	Eptatretus_burgeri
ENSHCOG00000002664	casc3	76	48.814	ENSEASG00005002909	CASC3	90	48.601	Equus_asinus_asinus
ENSHCOG00000002664	casc3	100	53.942	ENSELUG00000015093	casc3	100	53.518	Esox_lucius
ENSHCOG00000002664	casc3	94	40.915	ENSFDAG00000020696	CASC3	98	41.864	Fukomys_damarensis
ENSHCOG00000002664	casc3	94	60.248	ENSFHEG00000015793	casc3	100	62.924	Fundulus_heteroclitus
ENSHCOG00000002664	casc3	93	60.137	ENSGAFG00000017148	casc3	86	61.349	Gambusia_affinis
ENSHCOG00000002664	casc3	60	65.772	ENSGAGG00000008432	CASC3	86	51.152	Gopherus_agassizii
ENSHCOG00000002664	casc3	94	62.978	ENSHBUG00000013155	casc3	100	64.313	Haplochromis_burtoni
ENSHCOG00000002664	casc3	99	54.509	ENSIPUG00000002679	casc3	98	56.011	Ictalurus_punctatus
ENSHCOG00000002664	casc3	92	61.404	ENSKMAG00000019507	casc3	99	61.879	Kryptolebias_marmoratus
ENSHCOG00000002664	casc3	79	61.111	ENSLBEG00000005435	casc3	100	59.410	Labrus_bergylta
ENSHCOG00000002664	casc3	99	48.485	ENSLOCG00000013518	casc3	98	46.811	Lepisosteus_oculatus
ENSHCOG00000002664	casc3	77	48.684	ENSMFAG00000041496	CASC3	92	48.814	Macaca_fascicularis
ENSHCOG00000002664	casc3	94	60.512	ENSMAMG00000005235	casc3	100	61.125	Mastacembelus_armatus
ENSHCOG00000002664	casc3	94	62.842	ENSMZEG00005003815	casc3	100	64.185	Maylandia_zebra
ENSHCOG00000002664	casc3	82	42.229	ENSMGAG00000013247	CASC3	99	42.213	Meleagris_gallopavo
ENSHCOG00000002664	casc3	100	60.052	ENSMMOG00000014339	casc3	100	60.948	Mola_mola
ENSHCOG00000002664	casc3	57	93.684	ENSMALG00000019771	casc3	78	80.488	Monopterus_albus
ENSHCOG00000002664	casc3	70	44.395	ENSMEUG00000015662	CASC3	77	47.436	Notamacropus_eugenii
ENSHCOG00000002664	casc3	76	36.581	ENSOPRG00000007240	-	74	37.739	Ochotona_princeps
ENSHCOG00000002664	casc3	94	62.753	ENSONIG00000009337	casc3	100	63.974	Oreochromis_niloticus
ENSHCOG00000002664	casc3	94	60.820	ENSORLG00000023125	casc3	100	62.533	Oryzias_latipes
ENSHCOG00000002664	casc3	99	50.323	ENSPKIG00000023186	casc3	97	49.802	Paramormyrops_kingsleyae
ENSHCOG00000002664	casc3	93	60.567	ENSPFOG00000017632	casc3	100	60.996	Poecilia_formosa
ENSHCOG00000002664	casc3	94	60.929	ENSPLAG00000005268	casc3	100	62.982	Poecilia_latipinna
ENSHCOG00000002664	casc3	65	53.333	ENSPMEG00000010299	casc3	85	65.152	Poecilia_mexicana
ENSHCOG00000002664	casc3	78	62.768	ENSPREG00000011856	casc3	93	65.152	Poecilia_reticulata
ENSHCOG00000002664	casc3	94	62.978	ENSPNYG00000011962	casc3	100	64.313	Pundamilia_nyererei
ENSHCOG00000002664	casc3	93	54.720	ENSPNAG00000015928	casc3	98	55.007	Pygocentrus_nattereri
ENSHCOG00000002664	casc3	79	47.649	ENSRNOG00000009716	Casc3	91	49.488	Rattus_norvegicus
ENSHCOG00000002664	casc3	92	57.763	ENSSMAG00000016096	casc3	100	60.100	Scophthalmus_maximus
ENSHCOG00000002664	casc3	95	61.238	ENSSDUG00000016893	casc3	95	62.853	Seriola_dumerili
ENSHCOG00000002664	casc3	76	67.372	ENSSLDG00000020308	casc3	98	70.695	Seriola_lalandi_dorsalis
ENSHCOG00000002664	casc3	50	59.524	ENSSARG00000010378	CASC3	63	64.789	Sorex_araneus
ENSHCOG00000002664	casc3	73	41.105	ENSTGUG00000002300	CASC3	99	42.487	Taeniopygia_guttata
ENSHCOG00000002664	casc3	96	60.982	ENSTRUG00000000673	casc3	100	61.307	Takifugu_rubripes
ENSHCOG00000002664	casc3	95	57.483	ENSTNIG00000003208	casc3	100	58.000	Tetraodon_nigroviridis
ENSHCOG00000002664	casc3	62	57.143	ENSTBEG00000017459	CASC3	62	59.113	Tupaia_belangeri
ENSHCOG00000002664	casc3	76	48.475	ENSUAMG00000015116	CASC3	90	48.252	Ursus_americanus
ENSHCOG00000002664	casc3	58	61.538	ENSUMAG00000017697	CASC3	85	64.336	Ursus_maritimus
ENSHCOG00000002664	casc3	95	60.509	ENSXMAG00000013937	casc3	100	62.788	Xiphophorus_maculatus