EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000002740 (Gene tree)
Gene ID: 109517787
Gene Symbol: srsf6a
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 8028 bases
Position: chrKV880016.1:425270-433297
Accession: 109517787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018300	RRM_1	PF00076.22	2.6e-31	1	2
ENSHCOP00000018300	RRM_1	PF00076.22	2.6e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000011618	-	939	XM_019873140	ENSHCOP00000018300	312 (aa)	XP_019728699	-

Gene Model

Click here to download ENSHCOG00000002740's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG
hcq05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000002740's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000002740	srsf6a	74	58.120	ENSHCOG00000012540	srsf4	68	72.678
ENSHCOG00000002740	srsf6a	55	37.879	ENSHCOG00000012571	rbm14b	94	36.232
ENSHCOG00000002740	srsf6a	56	60.440	ENSHCOG00000017557	srsf5a	60	62.295
ENSHCOG00000002740	srsf6a	55	59.016	ENSHCOG00000005592	srsf5b	62	59.016
ENSHCOG00000002740	srsf6a	51	44.578	ENSHCOG00000018918	srsf1a	66	43.529
ENSHCOG00000002740	srsf6a	74	36.441	ENSHCOG00000008016	-	89	32.895

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000002740	srsf6a	57	83.152	ENSG00000124193	SRSF6	58	89.744	Homo_sapiens
ENSHCOG00000002740	srsf6a	57	64.865	ENSAMEG00000003710	SRSF6	53	65.761	Ailuropoda_melanoleuca
ENSHCOG00000002740	srsf6a	93	73.267	ENSACIG00000023658	-	88	74.306	Amphilophus_citrinellus
ENSHCOG00000002740	srsf6a	75	72.727	ENSACIG00000020091	-	95	76.378	Amphilophus_citrinellus
ENSHCOG00000002740	srsf6a	57	84.358	ENSAOCG00000004309	-	57	83.240	Amphiprion_ocellaris
ENSHCOG00000002740	srsf6a	94	73.620	ENSAPEG00000013086	-	88	55.814	Amphiprion_percula
ENSHCOG00000002740	srsf6a	59	80.000	ENSAPEG00000020746	-	65	79.891	Amphiprion_percula
ENSHCOG00000002740	srsf6a	57	81.461	ENSATEG00000007255	-	71	77.596	Anabas_testudineus
ENSHCOG00000002740	srsf6a	57	85.083	ENSACAG00000002061	SRSF6	52	85.083	Anolis_carolinensis
ENSHCOG00000002740	srsf6a	57	83.152	ENSANAG00000024080	SRSF6	58	89.744	Aotus_nancymaae
ENSHCOG00000002740	srsf6a	57	85.484	ENSAMXG00000003101	-	88	65.465	Astyanax_mexicanus
ENSHCOG00000002740	srsf6a	57	81.183	ENSAMXG00000042692	-	96	79.259	Astyanax_mexicanus
ENSHCOG00000002740	srsf6a	75	65.417	ENSBTAG00000008527	SRSF6	58	88.462	Bos_taurus
ENSHCOG00000002740	srsf6a	57	83.152	ENSCJAG00000048403	SRSF6	68	83.607	Callithrix_jacchus
ENSHCOG00000002740	srsf6a	57	82.065	ENSCAFG00000009289	SRSF6	58	88.462	Canis_familiaris
ENSHCOG00000002740	srsf6a	57	82.065	ENSCAFG00020013559	SRSF6	58	88.462	Canis_lupus_dingo
ENSHCOG00000002740	srsf6a	57	80.978	ENSCHIG00000009148	-	53	81.421	Capra_hircus
ENSHCOG00000002740	srsf6a	57	82.065	ENSCHIG00000015890	-	58	88.462	Capra_hircus
ENSHCOG00000002740	srsf6a	51	84.242	ENSCPOG00000011761	SRSF6	58	89.744	Cavia_porcellus
ENSHCOG00000002740	srsf6a	57	83.152	ENSCCAG00000026018	-	58	89.744	Cebus_capucinus
ENSHCOG00000002740	srsf6a	57	73.016	ENSCCAG00000018540	-	60	72.826	Cebus_capucinus
ENSHCOG00000002740	srsf6a	57	83.152	ENSCATG00000030794	SRSF6	58	89.744	Cercocebus_atys
ENSHCOG00000002740	srsf6a	57	83.152	ENSCLAG00000010247	SRSF6	58	89.744	Chinchilla_lanigera
ENSHCOG00000002740	srsf6a	57	83.152	ENSCSAG00000014022	SRSF6	53	83.607	Chlorocebus_sabaeus
ENSHCOG00000002740	srsf6a	57	83.422	ENSCPBG00000018200	SRSF6	87	68.874	Chrysemys_picta_bellii
ENSHCOG00000002740	srsf6a	57	82.065	ENSCANG00000037774	-	53	82.514	Colobus_angolensis_palliatus
ENSHCOG00000002740	srsf6a	57	82.065	ENSCGRG00001022339	Srsf6	58	87.179	Cricetulus_griseus_chok1gshd
ENSHCOG00000002740	srsf6a	57	81.818	ENSDARG00000016783	srsf6b	82	89.744	Danio_rerio
ENSHCOG00000002740	srsf6a	57	83.152	ENSDNOG00000008410	SRSF6	53	83.607	Dasypus_novemcinctus
ENSHCOG00000002740	srsf6a	57	83.152	ENSDORG00000028378	Srsf6	58	89.744	Dipodomys_ordii
ENSHCOG00000002740	srsf6a	57	80.328	ENSETEG00000006221	SRSF6	83	64.360	Echinops_telfairi
ENSHCOG00000002740	srsf6a	57	82.065	ENSEASG00005023429	SRSF6	53	82.514	Equus_asinus_asinus
ENSHCOG00000002740	srsf6a	57	82.065	ENSECAG00000023932	SRSF6	56	82.514	Equus_caballus
ENSHCOG00000002740	srsf6a	100	66.458	ENSELUG00000013506	SRSF6	92	68.836	Esox_lucius
ENSHCOG00000002740	srsf6a	57	84.127	ENSELUG00000024182	SRSF6	90	81.301	Esox_lucius
ENSHCOG00000002740	srsf6a	57	82.065	ENSFCAG00000032814	SRSF6	53	82.514	Felis_catus
ENSHCOG00000002740	srsf6a	94	77.636	ENSFHEG00000023065	srsf6a	91	78.033	Fundulus_heteroclitus
ENSHCOG00000002740	srsf6a	74	81.421	ENSGMOG00000014458	srsf6a	92	57.895	Gadus_morhua
ENSHCOG00000002740	srsf6a	56	77.011	ENSGMOG00000006105	srsf6a	62	75.287	Gadus_morhua
ENSHCOG00000002740	srsf6a	57	83.957	ENSGALG00000000990	SRSF6	100	61.538	Gallus_gallus
ENSHCOG00000002740	srsf6a	94	67.147	ENSGACG00000006084	srsf6a	63	85.405	Gasterosteus_aculeatus
ENSHCOG00000002740	srsf6a	57	83.422	ENSGAGG00000003238	SRSF6	87	68.874	Gopherus_agassizii
ENSHCOG00000002740	srsf6a	57	83.152	ENSGGOG00000009808	SRSF6	58	89.744	Gorilla_gorilla
ENSHCOG00000002740	srsf6a	68	77.729	ENSHBUG00000006386	-	94	67.347	Haplochromis_burtoni
ENSHCOG00000002740	srsf6a	57	83.152	ENSHGLG00000007348	SRSF6	58	89.744	Heterocephalus_glaber_female
ENSHCOG00000002740	srsf6a	60	68.947	ENSHGLG00000007701	-	91	53.287	Heterocephalus_glaber_female
ENSHCOG00000002740	srsf6a	55	84.795	ENSIPUG00000016856	SRSF6	88	62.333	Ictalurus_punctatus
ENSHCOG00000002740	srsf6a	57	86.592	ENSIPUG00000004776	-	63	86.592	Ictalurus_punctatus
ENSHCOG00000002740	srsf6a	57	83.152	ENSSTOG00000010866	SRSF6	58	89.744	Ictidomys_tridecemlineatus
ENSHCOG00000002740	srsf6a	94	73.559	ENSKMAG00000011934	srsf6a	90	73.519	Kryptolebias_marmoratus
ENSHCOG00000002740	srsf6a	57	86.957	ENSLBEG00000007356	srsf6a	93	61.862	Labrus_bergylta
ENSHCOG00000002740	srsf6a	90	68.647	ENSLACG00000005466	SRSF6	88	66.667	Latimeria_chalumnae
ENSHCOG00000002740	srsf6a	57	83.152	ENSMFAG00000036925	SRSF6	58	89.744	Macaca_fascicularis
ENSHCOG00000002740	srsf6a	57	83.152	ENSMMUG00000006742	SRSF6	58	89.744	Macaca_mulatta
ENSHCOG00000002740	srsf6a	57	82.609	ENSMNEG00000038270	-	53	83.060	Macaca_nemestrina
ENSHCOG00000002740	srsf6a	57	82.609	ENSMNEG00000027392	-	58	88.462	Macaca_nemestrina
ENSHCOG00000002740	srsf6a	57	87.027	ENSMAMG00000017161	srsf6a	91	68.652	Mastacembelus_armatus
ENSHCOG00000002740	srsf6a	68	74.359	ENSMZEG00005008032	-	57	83.240	Maylandia_zebra
ENSHCOG00000002740	srsf6a	81	73.622	ENSMZEG00005020658	-	92	70.922	Maylandia_zebra
ENSHCOG00000002740	srsf6a	57	82.609	ENSMICG00000008537	SRSF6	58	89.744	Microcebus_murinus
ENSHCOG00000002740	srsf6a	57	84.324	ENSMODG00000003107	SRSF6	88	71.000	Monodelphis_domestica
ENSHCOG00000002740	srsf6a	77	80.108	ENSMALG00000003702	srsf6a	55	79.213	Monopterus_albus
ENSHCOG00000002740	srsf6a	57	82.065	MGP_CAROLIEiJ_G0024606	Srsf6	58	87.179	Mus_caroli
ENSHCOG00000002740	srsf6a	57	82.065	ENSMUSG00000016921	Srsf6	58	87.179	Mus_musculus
ENSHCOG00000002740	srsf6a	57	82.065	MGP_PahariEiJ_G0026050	Srsf6	58	87.179	Mus_pahari
ENSHCOG00000002740	srsf6a	57	82.065	MGP_SPRETEiJ_G0025528	Srsf6	58	87.179	Mus_spretus
ENSHCOG00000002740	srsf6a	57	82.065	ENSMPUG00000017692	SRSF6	64	82.514	Mustela_putorius_furo
ENSHCOG00000002740	srsf6a	57	56.311	ENSMLUG00000016618	SRSF6	53	55.882	Myotis_lucifugus
ENSHCOG00000002740	srsf6a	57	83.152	ENSNGAG00000017560	Srsf6	58	89.744	Nannospalax_galili
ENSHCOG00000002740	srsf6a	57	84.358	ENSNBRG00000014709	-	95	67.230	Neolamprologus_brichardi
ENSHCOG00000002740	srsf6a	87	85.792	ENSNBRG00000001846	-	88	70.347	Neolamprologus_brichardi
ENSHCOG00000002740	srsf6a	57	83.152	ENSNLEG00000006524	SRSF6	58	89.744	Nomascus_leucogenys
ENSHCOG00000002740	srsf6a	57	84.324	ENSMEUG00000014615	SRSF6	98	71.477	Notamacropus_eugenii
ENSHCOG00000002740	srsf6a	57	83.333	ENSONIG00000020247	-	95	64.706	Oreochromis_niloticus
ENSHCOG00000002740	srsf6a	94	71.975	ENSONIG00000001925	-	86	72.964	Oreochromis_niloticus
ENSHCOG00000002740	srsf6a	77	48.133	ENSOCUG00000023999	-	70	50.568	Oryctolagus_cuniculus
ENSHCOG00000002740	srsf6a	57	64.103	ENSOCUG00000009785	-	97	55.068	Oryctolagus_cuniculus
ENSHCOG00000002740	srsf6a	57	75.419	ENSOMEG00000006001	srsf6a	50	74.742	Oryzias_melastigma
ENSHCOG00000002740	srsf6a	57	82.609	ENSOGAG00000014468	SRSF6	53	83.060	Otolemur_garnettii
ENSHCOG00000002740	srsf6a	57	80.874	ENSOARG00000003117	SRSF6	53	80.769	Ovis_aries
ENSHCOG00000002740	srsf6a	57	82.609	ENSPPAG00000034327	-	53	83.060	Pan_paniscus
ENSHCOG00000002740	srsf6a	57	70.950	ENSPPAG00000043131	-	57	73.034	Pan_paniscus
ENSHCOG00000002740	srsf6a	57	82.065	ENSPPRG00000008917	SRSF6	53	82.514	Panthera_pardus
ENSHCOG00000002740	srsf6a	57	82.123	ENSPTIG00000021305	-	69	60.000	Panthera_tigris_altaica
ENSHCOG00000002740	srsf6a	57	83.152	ENSPTRG00000044686	-	58	89.744	Pan_troglodytes
ENSHCOG00000002740	srsf6a	57	70.950	ENSPTRG00000046274	-	57	73.034	Pan_troglodytes
ENSHCOG00000002740	srsf6a	57	83.152	ENSPANG00000035224	SRSF6	58	89.744	Papio_anubis
ENSHCOG00000002740	srsf6a	92	75.510	ENSPKIG00000018463	-	83	88.202	Paramormyrops_kingsleyae
ENSHCOG00000002740	srsf6a	55	73.743	ENSPKIG00000015703	-	95	63.889	Paramormyrops_kingsleyae
ENSHCOG00000002740	srsf6a	94	74.026	ENSPMGG00000014963	srsf6a	90	73.333	Periophthalmus_magnuspinnatus
ENSHCOG00000002740	srsf6a	57	84.324	ENSPCIG00000003820	SRSF6	88	71.000	Phascolarctos_cinereus
ENSHCOG00000002740	srsf6a	77	93.103	ENSPFOG00000006437	srsf6a	92	68.946	Poecilia_formosa
ENSHCOG00000002740	srsf6a	94	70.270	ENSPLAG00000009243	srsf6a	80	84.252	Poecilia_latipinna
ENSHCOG00000002740	srsf6a	54	68.681	ENSPMEG00000006056	SRSF6	85	64.943	Poecilia_mexicana
ENSHCOG00000002740	srsf6a	57	87.500	ENSPMEG00000006042	SRSF6	91	71.019	Poecilia_mexicana
ENSHCOG00000002740	srsf6a	57	83.152	ENSPPYG00000011019	SRSF6	53	83.607	Pongo_abelii
ENSHCOG00000002740	srsf6a	57	83.696	ENSPCAG00000010954	SRSF6	55	84.153	Procavia_capensis
ENSHCOG00000002740	srsf6a	57	82.609	ENSPCOG00000026364	SRSF6	58	89.744	Propithecus_coquereli
ENSHCOG00000002740	srsf6a	57	82.609	ENSPVAG00000015232	SRSF6	53	83.516	Pteropus_vampyrus
ENSHCOG00000002740	srsf6a	57	84.358	ENSPNYG00000004944	-	94	67.347	Pundamilia_nyererei
ENSHCOG00000002740	srsf6a	56	85.792	ENSPNYG00000011272	-	82	55.450	Pundamilia_nyererei
ENSHCOG00000002740	srsf6a	51	51.185	ENSPNAG00000023145	-	85	46.154	Pygocentrus_nattereri
ENSHCOG00000002740	srsf6a	57	82.065	ENSRNOG00000006380	Srsf6	54	82.514	Rattus_norvegicus
ENSHCOG00000002740	srsf6a	57	86.592	ENSRBIG00000041414	SRSF6	60	89.744	Rhinopithecus_bieti
ENSHCOG00000002740	srsf6a	57	83.152	ENSRROG00000029989	SRSF6	58	89.744	Rhinopithecus_roxellana
ENSHCOG00000002740	srsf6a	57	83.152	ENSSBOG00000033708	-	58	89.744	Saimiri_boliviensis_boliviensis
ENSHCOG00000002740	srsf6a	56	71.751	ENSSBOG00000034078	-	54	71.023	Saimiri_boliviensis_boliviensis
ENSHCOG00000002740	srsf6a	57	84.324	ENSSHAG00000012805	SRSF6	88	70.000	Sarcophilus_harrisii
ENSHCOG00000002740	srsf6a	57	81.347	ENSSFOG00015019681	-	53	80.311	Scleropages_formosus
ENSHCOG00000002740	srsf6a	56	86.667	ENSSFOG00015015169	SRSF6	90	74.913	Scleropages_formosus
ENSHCOG00000002740	srsf6a	57	77.778	ENSSMAG00000017447	-	91	60.328	Scophthalmus_maximus
ENSHCOG00000002740	srsf6a	68	71.622	ENSSMAG00000014819	-	81	77.340	Scophthalmus_maximus
ENSHCOG00000002740	srsf6a	57	87.027	ENSSDUG00000016097	srsf6a	91	68.025	Seriola_dumerili
ENSHCOG00000002740	srsf6a	57	87.027	ENSSLDG00000022841	srsf6a	92	67.712	Seriola_lalandi_dorsalis
ENSHCOG00000002740	srsf6a	57	86.188	ENSSPUG00000004967	SRSF6	58	92.308	Sphenodon_punctatus
ENSHCOG00000002740	srsf6a	94	81.481	ENSSPAG00000002362	srsf6a	100	74.026	Stegastes_partitus
ENSHCOG00000002740	srsf6a	57	82.065	ENSSSCG00000007362	SRSF6	95	65.172	Sus_scrofa
ENSHCOG00000002740	srsf6a	57	83.696	ENSTGUG00000003455	SRSF6	100	62.069	Taeniopygia_guttata
ENSHCOG00000002740	srsf6a	93	72.131	ENSTNIG00000001692	srsf6a	92	71.429	Tetraodon_nigroviridis
ENSHCOG00000002740	srsf6a	57	82.065	ENSUAMG00000003559	SRSF6	58	88.462	Ursus_americanus
ENSHCOG00000002740	srsf6a	94	75.405	ENSXMAG00000021849	srsf6a	91	74.419	Xiphophorus_maculatus