EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003014 (Gene tree)
Gene ID: 109514585
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4255 bases
Position: chrKV879881.1:318184-322438
Accession: 109514585
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000001959	RRM_1	PF00076.22	6.3e-39	1	2
ENSHCOP00000001959	RRM_1	PF00076.22	6.3e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000011217	-	2660	XM_019867829	ENSHCOP00000001959	399 (aa)	XP_019723388	UPI00094EA5F7

Gene Model

Click here to download ENSHCOG00000003014's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003014's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003014	sf3b4	54	38.798	ENSHCOG00000013502	pabpc1a	57	38.798

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003014	sf3b4	57	96.491	ENSG00000143368	SF3B4	89	99.412	Homo_sapiens
ENSHCOG00000003014	sf3b4	57	97.380	ENSAPOG00000017647	sf3b4	57	97.357	Acanthochromis_polyacanthus
ENSHCOG00000003014	sf3b4	58	95.671	ENSACIG00000018455	sf3b4	67	96.476	Amphilophus_citrinellus
ENSHCOG00000003014	sf3b4	57	97.357	ENSAOCG00000019801	sf3b4	57	97.357	Amphiprion_ocellaris
ENSHCOG00000003014	sf3b4	57	97.357	ENSAPEG00000010365	sf3b4	57	97.357	Amphiprion_percula
ENSHCOG00000003014	sf3b4	57	97.380	ENSATEG00000012844	sf3b4	99	85.149	Anabas_testudineus
ENSHCOG00000003014	sf3b4	57	96.491	ENSANAG00000031025	SF3B4	50	99.531	Aotus_nancymaae
ENSHCOG00000003014	sf3b4	59	95.359	ENSACLG00000014260	sf3b4	57	97.357	Astatotilapia_calliptera
ENSHCOG00000003014	sf3b4	57	96.507	ENSAMXG00000008282	sf3b4	57	96.916	Astyanax_mexicanus
ENSHCOG00000003014	sf3b4	61	74.597	WBGene00004723	sap-49	55	81.221	Caenorhabditis_elegans
ENSHCOG00000003014	sf3b4	57	96.491	ENSTSYG00000009295	SF3B4	50	99.531	Carlito_syrichta
ENSHCOG00000003014	sf3b4	57	96.491	ENSCATG00000033114	SF3B4	50	99.531	Cercocebus_atys
ENSHCOG00000003014	sf3b4	57	96.491	ENSCSAG00000018129	SF3B4	50	99.531	Chlorocebus_sabaeus
ENSHCOG00000003014	sf3b4	54	99.533	ENSCPBG00000008041	SF3B4	54	97.797	Chrysemys_picta_bellii
ENSHCOG00000003014	sf3b4	54	90.187	ENSCING00000002337	-	57	90.141	Ciona_intestinalis
ENSHCOG00000003014	sf3b4	52	89.286	ENSCSAVG00000007809	-	89	89.222	Ciona_savignyi
ENSHCOG00000003014	sf3b4	57	96.491	ENSCANG00000035579	SF3B4	50	99.531	Colobus_angolensis_palliatus
ENSHCOG00000003014	sf3b4	66	90.494	ENSCVAG00000005536	sf3b4	55	99.531	Cyprinodon_variegatus
ENSHCOG00000003014	sf3b4	57	96.507	ENSDARG00000018574	sf3b4	57	96.916	Danio_rerio
ENSHCOG00000003014	sf3b4	73	66.212	FBgn0015818	Spx	61	88.263	Drosophila_melanogaster
ENSHCOG00000003014	sf3b4	57	96.943	ENSELUG00000012876	sf3b4	56	97.357	Esox_lucius
ENSHCOG00000003014	sf3b4	57	97.380	ENSGMOG00000002519	sf3b4	67	97.357	Gadus_morhua
ENSHCOG00000003014	sf3b4	66	88.636	ENSGAFG00000010181	sf3b4	58	97.357	Gambusia_affinis
ENSHCOG00000003014	sf3b4	57	97.357	ENSGACG00000003819	sf3b4	99	81.955	Gasterosteus_aculeatus
ENSHCOG00000003014	sf3b4	57	96.491	ENSGGOG00000004761	SF3B4	50	99.531	Gorilla_gorilla
ENSHCOG00000003014	sf3b4	76	68.932	ENSGGOG00000038845	-	54	88.679	Gorilla_gorilla
ENSHCOG00000003014	sf3b4	59	95.359	ENSHBUG00000002028	sf3b4	57	97.357	Haplochromis_burtoni
ENSHCOG00000003014	sf3b4	57	96.491	ENSHGLG00100008533	SF3B4	51	99.531	Heterocephalus_glaber_male
ENSHCOG00000003014	sf3b4	57	96.507	ENSIPUG00000012242	Sf3b4	57	96.916	Ictalurus_punctatus
ENSHCOG00000003014	sf3b4	61	93.033	ENSKMAG00000008154	sf3b4	58	97.357	Kryptolebias_marmoratus
ENSHCOG00000003014	sf3b4	58	96.137	ENSLBEG00000026818	sf3b4	99	82.836	Labrus_bergylta
ENSHCOG00000003014	sf3b4	57	96.491	ENSLAFG00000008531	SF3B4	50	99.531	Loxodonta_africana
ENSHCOG00000003014	sf3b4	57	96.491	ENSMFAG00000042395	SF3B4	50	99.531	Macaca_fascicularis
ENSHCOG00000003014	sf3b4	93	58.289	ENSMFAG00000039067	-	53	79.500	Macaca_fascicularis
ENSHCOG00000003014	sf3b4	57	96.491	ENSMMUG00000007256	SF3B4	50	99.531	Macaca_mulatta
ENSHCOG00000003014	sf3b4	57	96.491	ENSMNEG00000031839	SF3B4	50	99.531	Macaca_nemestrina
ENSHCOG00000003014	sf3b4	93	57.754	ENSMNEG00000031526	-	53	79.000	Macaca_nemestrina
ENSHCOG00000003014	sf3b4	57	96.491	ENSMLEG00000038667	SF3B4	50	99.531	Mandrillus_leucophaeus
ENSHCOG00000003014	sf3b4	61	92.623	ENSMAMG00000014692	sf3b4	95	86.877	Mastacembelus_armatus
ENSHCOG00000003014	sf3b4	59	95.359	ENSMZEG00005026741	sf3b4	57	97.357	Maylandia_zebra
ENSHCOG00000003014	sf3b4	54	99.533	ENSMGAG00000000653	SF3B4	51	99.531	Meleagris_gallopavo
ENSHCOG00000003014	sf3b4	57	97.380	ENSMMOG00000018032	sf3b4	58	97.797	Mola_mola
ENSHCOG00000003014	sf3b4	57	96.491	ENSMODG00000018767	SF3B4	50	99.531	Monodelphis_domestica
ENSHCOG00000003014	sf3b4	57	97.357	ENSMALG00000006174	sf3b4	56	97.357	Monopterus_albus
ENSHCOG00000003014	sf3b4	57	96.491	MGP_CAROLIEiJ_G0025365	Sf3b4	50	99.531	Mus_caroli
ENSHCOG00000003014	sf3b4	57	96.491	ENSNGAG00000016337	Sf3b4	50	99.531	Nannospalax_galili
ENSHCOG00000003014	sf3b4	59	95.359	ENSNBRG00000013865	sf3b4	57	97.357	Neolamprologus_brichardi
ENSHCOG00000003014	sf3b4	100	49.640	ENSNLEG00000009693	-	99	49.640	Nomascus_leucogenys
ENSHCOG00000003014	sf3b4	96	63.476	ENSNLEG00000000537	-	54	89.671	Nomascus_leucogenys
ENSHCOG00000003014	sf3b4	57	79.913	ENSODEG00000003597	-	52	82.243	Octodon_degus
ENSHCOG00000003014	sf3b4	91	55.440	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSHCOG00000003014	sf3b4	59	95.359	ENSONIG00000002730	sf3b4	57	97.357	Oreochromis_niloticus
ENSHCOG00000003014	sf3b4	62	73.518	ENSOANG00000004768	-	50	81.481	Ornithorhynchus_anatinus
ENSHCOG00000003014	sf3b4	58	96.567	ENSORLG00000003062	sf3b4	59	97.357	Oryzias_latipes
ENSHCOG00000003014	sf3b4	58	96.567	ENSORLG00020000687	sf3b4	57	97.357	Oryzias_latipes_hni
ENSHCOG00000003014	sf3b4	58	96.567	ENSORLG00015010989	sf3b4	57	97.357	Oryzias_latipes_hsok
ENSHCOG00000003014	sf3b4	57	96.943	ENSOMEG00000013694	sf3b4	57	97.357	Oryzias_melastigma
ENSHCOG00000003014	sf3b4	62	77.236	ENSOARG00000007368	-	51	82.775	Ovis_aries
ENSHCOG00000003014	sf3b4	57	96.491	ENSPPAG00000040904	SF3B4	50	99.531	Pan_paniscus
ENSHCOG00000003014	sf3b4	76	71.565	ENSPPAG00000030024	-	52	88.732	Pan_paniscus
ENSHCOG00000003014	sf3b4	57	96.491	ENSPTRG00000001243	SF3B4	50	99.531	Pan_troglodytes
ENSHCOG00000003014	sf3b4	76	73.026	ENSPTRG00000049727	-	53	89.202	Pan_troglodytes
ENSHCOG00000003014	sf3b4	57	96.491	ENSPANG00000005126	SF3B4	50	99.531	Papio_anubis
ENSHCOG00000003014	sf3b4	57	96.943	ENSPKIG00000020669	sf3b4	60	97.357	Paramormyrops_kingsleyae
ENSHCOG00000003014	sf3b4	65	77.395	ENSPSIG00000009565	SF3B4	67	97.283	Pelodiscus_sinensis
ENSHCOG00000003014	sf3b4	53	95.305	ENSPMAG00000007842	-	50	95.305	Petromyzon_marinus
ENSHCOG00000003014	sf3b4	57	96.491	ENSPCIG00000008765	SF3B4	50	99.531	Phascolarctos_cinereus
ENSHCOG00000003014	sf3b4	66	90.494	ENSPFOG00000005754	sf3b4	58	97.357	Poecilia_formosa
ENSHCOG00000003014	sf3b4	66	90.494	ENSPLAG00000001401	sf3b4	63	97.357	Poecilia_latipinna
ENSHCOG00000003014	sf3b4	66	90.494	ENSPREG00000011076	sf3b4	56	97.357	Poecilia_reticulata
ENSHCOG00000003014	sf3b4	52	96.154	ENSPCAG00000000392	SF3B4	50	96.154	Procavia_capensis
ENSHCOG00000003014	sf3b4	59	95.359	ENSPNYG00000012700	sf3b4	57	97.357	Pundamilia_nyererei
ENSHCOG00000003014	sf3b4	57	96.507	ENSPNAG00000000686	sf3b4	58	96.916	Pygocentrus_nattereri
ENSHCOG00000003014	sf3b4	57	96.491	ENSRBIG00000043392	SF3B4	50	99.531	Rhinopithecus_bieti
ENSHCOG00000003014	sf3b4	57	96.491	ENSRROG00000029366	SF3B4	50	99.531	Rhinopithecus_roxellana
ENSHCOG00000003014	sf3b4	92	57.796	ENSRROG00000028213	-	51	75.122	Rhinopithecus_roxellana
ENSHCOG00000003014	sf3b4	57	96.053	ENSSBOG00000012310	-	50	99.061	Saimiri_boliviensis_boliviensis
ENSHCOG00000003014	sf3b4	57	91.667	ENSSHAG00000004043	SF3B4	50	94.203	Sarcophilus_harrisii
ENSHCOG00000003014	sf3b4	57	96.943	ENSSFOG00015008864	sf3b4	56	97.357	Scleropages_formosus
ENSHCOG00000003014	sf3b4	85	85.673	ENSSMAG00000006837	sf3b4	99	84.615	Scophthalmus_maximus
ENSHCOG00000003014	sf3b4	57	96.943	ENSSDUG00000012064	sf3b4	99	85.149	Seriola_dumerili
ENSHCOG00000003014	sf3b4	57	96.943	ENSSLDG00000014226	sf3b4	99	85.396	Seriola_lalandi_dorsalis
ENSHCOG00000003014	sf3b4	57	96.943	ENSSPAG00000019219	sf3b4	56	97.357	Stegastes_partitus
ENSHCOG00000003014	sf3b4	57	96.491	ENSSSCG00000006665	-	50	99.531	Sus_scrofa
ENSHCOG00000003014	sf3b4	78	55.486	ENSSSCG00000039440	-	50	64.319	Sus_scrofa
ENSHCOG00000003014	sf3b4	61	92.623	ENSTGUG00000004470	SF3B4	84	99.531	Taeniopygia_guttata
ENSHCOG00000003014	sf3b4	79	84.227	ENSTRUG00000004516	sf3b4	57	97.797	Takifugu_rubripes
ENSHCOG00000003014	sf3b4	57	97.817	ENSTNIG00000009156	sf3b4	58	98.238	Tetraodon_nigroviridis
ENSHCOG00000003014	sf3b4	57	96.491	ENSUMAG00000003802	SF3B4	50	99.531	Ursus_maritimus
ENSHCOG00000003014	sf3b4	75	78.947	ENSXETG00000011038	sf3b4	54	99.505	Xenopus_tropicalis
ENSHCOG00000003014	sf3b4	57	97.380	ENSXCOG00000019895	sf3b4	58	97.357	Xiphophorus_couchianus
ENSHCOG00000003014	sf3b4	57	97.380	ENSXMAG00000003772	sf3b4	58	97.357	Xiphophorus_maculatus