EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000003222 (Gene tree)
Gene ID: 109530597
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 23027 bases
Position: chrKV880396.1:1251556-1274582
Accession: 109530597
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000002141	CMS1	PF14617.6	2.2e-31	1	1
ENSHCOP00000002141	DEAD	PF00270.29	1.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010909	-	928	XM_019894436	ENSHCOP00000002141	295 (aa)	XP_019749995	UPI00094EBB01

Gene Model

Click here to download ENSHCOG00000003222's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003222's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003222	cmss1	100	53.716	ENSG00000184220	CMSS1	98	66.250	Homo_sapiens
ENSHCOG00000003222	cmss1	79	71.368	ENSAPOG00000010604	cmss1	93	70.356	Acanthochromis_polyacanthus
ENSHCOG00000003222	cmss1	74	63.636	ENSAMEG00000004092	CMSS1	85	63.636	Ailuropoda_melanoleuca
ENSHCOG00000003222	cmss1	77	69.912	ENSACIG00000021854	cmss1	96	67.589	Amphilophus_citrinellus
ENSHCOG00000003222	cmss1	100	64.407	ENSAOCG00000013361	cmss1	100	67.797	Amphiprion_ocellaris
ENSHCOG00000003222	cmss1	100	64.746	ENSAPEG00000005829	cmss1	100	68.581	Amphiprion_percula
ENSHCOG00000003222	cmss1	100	66.892	ENSATEG00000008209	cmss1	100	67.568	Anabas_testudineus
ENSHCOG00000003222	cmss1	77	60.619	ENSAPLG00000010542	CMSS1	88	62.376	Anas_platyrhynchos
ENSHCOG00000003222	cmss1	95	56.429	ENSACAG00000011065	CMSS1	74	63.861	Anolis_carolinensis
ENSHCOG00000003222	cmss1	100	53.898	ENSANAG00000023565	CMSS1	100	52.703	Aotus_nancymaae
ENSHCOG00000003222	cmss1	100	68.136	ENSACLG00000027294	cmss1	100	69.932	Astatotilapia_calliptera
ENSHCOG00000003222	cmss1	100	55.892	ENSAMXG00000002046	cmss1	100	52.412	Astyanax_mexicanus
ENSHCOG00000003222	cmss1	100	52.703	ENSBTAG00000013663	CMSS1	100	50.847	Bos_taurus
ENSHCOG00000003222	cmss1	100	54.237	ENSCJAG00000000610	CMSS1	100	52.365	Callithrix_jacchus
ENSHCOG00000003222	cmss1	74	65.297	ENSCAFG00000009230	CMSS1	79	65.297	Canis_familiaris
ENSHCOG00000003222	cmss1	74	65.297	ENSCAFG00020009464	-	80	65.297	Canis_lupus_dingo
ENSHCOG00000003222	cmss1	74	63.594	ENSCAFG00020024156	-	68	63.594	Canis_lupus_dingo
ENSHCOG00000003222	cmss1	74	63.470	ENSCHIG00000013003	CMSS1	79	63.470	Capra_hircus
ENSHCOG00000003222	cmss1	74	64.384	ENSTSYG00000009266	CMSS1	84	64.384	Carlito_syrichta
ENSHCOG00000003222	cmss1	74	52.511	ENSCAPG00000013584	CMSS1	87	58.065	Cavia_aperea
ENSHCOG00000003222	cmss1	100	54.576	ENSCPOG00000014680	CMSS1	100	52.542	Cavia_porcellus
ENSHCOG00000003222	cmss1	100	54.915	ENSCCAG00000034685	CMSS1	100	53.378	Cebus_capucinus
ENSHCOG00000003222	cmss1	100	53.000	ENSCATG00000031980	CMSS1	100	53.333	Cercocebus_atys
ENSHCOG00000003222	cmss1	74	63.927	ENSCLAG00000011241	CMSS1	94	63.927	Chinchilla_lanigera
ENSHCOG00000003222	cmss1	68	65.842	ENSCSAG00000006024	CMSS1	90	63.111	Chlorocebus_sabaeus
ENSHCOG00000003222	cmss1	100	40.604	ENSCHOG00000012098	CMSS1	100	41.275	Choloepus_hoffmanni
ENSHCOG00000003222	cmss1	67	45.050	ENSCING00000014848	-	99	46.524	Ciona_intestinalis
ENSHCOG00000003222	cmss1	100	52.667	ENSCANG00000031337	CMSS1	100	52.649	Colobus_angolensis_palliatus
ENSHCOG00000003222	cmss1	100	50.847	ENSCGRG00001014305	Cmss1	100	50.847	Cricetulus_griseus_chok1gshd
ENSHCOG00000003222	cmss1	74	60.731	ENSCGRG00000006722	Cmss1	85	60.731	Cricetulus_griseus_crigri
ENSHCOG00000003222	cmss1	100	64.883	ENSCSEG00000004958	cmss1	100	65.552	Cynoglossus_semilaevis
ENSHCOG00000003222	cmss1	100	65.657	ENSCVAG00000005039	cmss1	100	66.330	Cyprinodon_variegatus
ENSHCOG00000003222	cmss1	100	56.081	ENSDARG00000112579	cmss1	100	56.081	Danio_rerio
ENSHCOG00000003222	cmss1	74	62.100	ENSDNOG00000040418	CMSS1	79	62.100	Dasypus_novemcinctus
ENSHCOG00000003222	cmss1	100	55.932	ENSDORG00000010461	Cmss1	100	55.593	Dipodomys_ordii
ENSHCOG00000003222	cmss1	74	63.470	ENSEASG00005010966	CMSS1	99	63.470	Equus_asinus_asinus
ENSHCOG00000003222	cmss1	74	63.014	ENSECAG00000015662	CMSS1	96	63.014	Equus_caballus
ENSHCOG00000003222	cmss1	68	44.500	ENSEEUG00000007624	-	100	38.255	Erinaceus_europaeus
ENSHCOG00000003222	cmss1	100	57.616	ENSELUG00000019459	cmss1	100	55.238	Esox_lucius
ENSHCOG00000003222	cmss1	100	54.915	ENSFCAG00000044577	CMSS1	100	52.881	Felis_catus
ENSHCOG00000003222	cmss1	77	61.062	ENSFALG00000005816	CMSS1	95	61.504	Ficedula_albicollis
ENSHCOG00000003222	cmss1	74	65.297	ENSFDAG00000012577	CMSS1	96	65.297	Fukomys_damarensis
ENSHCOG00000003222	cmss1	76	72.321	ENSFHEG00000012008	cmss1	92	72.321	Fundulus_heteroclitus
ENSHCOG00000003222	cmss1	99	65.068	ENSGMOG00000016729	cmss1	100	64.384	Gadus_morhua
ENSHCOG00000003222	cmss1	81	60.417	ENSGALG00000015267	CMSS1	77	63.861	Gallus_gallus
ENSHCOG00000003222	cmss1	70	78.261	ENSGAFG00000021217	cmss1	77	77.833	Gambusia_affinis
ENSHCOG00000003222	cmss1	99	63.014	ENSGACG00000002798	cmss1	100	64.384	Gasterosteus_aculeatus
ENSHCOG00000003222	cmss1	95	53.763	ENSGAGG00000019861	CMSS1	79	62.871	Gopherus_agassizii
ENSHCOG00000003222	cmss1	68	65.347	ENSGGOG00000014125	CMSS1	84	62.667	Gorilla_gorilla
ENSHCOG00000003222	cmss1	100	69.153	ENSHBUG00000008431	cmss1	100	68.814	Haplochromis_burtoni
ENSHCOG00000003222	cmss1	74	63.927	ENSHGLG00000019481	CMSS1	89	63.927	Heterocephalus_glaber_female
ENSHCOG00000003222	cmss1	74	63.927	ENSHGLG00100010314	CMSS1	88	63.927	Heterocephalus_glaber_male
ENSHCOG00000003222	cmss1	100	57.095	ENSIPUG00000011591	cmss1	100	57.718	Ictalurus_punctatus
ENSHCOG00000003222	cmss1	100	53.156	ENSSTOG00000019366	CMSS1	100	52.159	Ictidomys_tridecemlineatus
ENSHCOG00000003222	cmss1	100	53.220	ENSJJAG00000014894	Cmss1	90	64.851	Jaculus_jaculus
ENSHCOG00000003222	cmss1	69	70.443	ENSKMAG00000002390	cmss1	82	70.443	Kryptolebias_marmoratus
ENSHCOG00000003222	cmss1	92	64.207	ENSLBEG00000006298	cmss1	83	76.471	Labrus_bergylta
ENSHCOG00000003222	cmss1	76	63.677	ENSLACG00000009293	CMSS1	94	61.638	Latimeria_chalumnae
ENSHCOG00000003222	cmss1	100	53.220	ENSLOCG00000009391	cmss1	100	50.836	Lepisosteus_oculatus
ENSHCOG00000003222	cmss1	74	64.384	ENSLAFG00000017509	CMSS1	96	64.384	Loxodonta_africana
ENSHCOG00000003222	cmss1	100	52.333	ENSMFAG00000045006	CMSS1	100	52.318	Macaca_fascicularis
ENSHCOG00000003222	cmss1	100	52.000	ENSMMUG00000002939	CMSS1	93	61.860	Macaca_mulatta
ENSHCOG00000003222	cmss1	100	52.000	ENSMNEG00000031315	CMSS1	100	51.987	Macaca_nemestrina
ENSHCOG00000003222	cmss1	100	53.000	ENSMLEG00000033660	CMSS1	100	52.980	Mandrillus_leucophaeus
ENSHCOG00000003222	cmss1	100	69.932	ENSMAMG00000017176	cmss1	100	69.932	Mastacembelus_armatus
ENSHCOG00000003222	cmss1	100	68.136	ENSMZEG00005021886	cmss1	100	69.932	Maylandia_zebra
ENSHCOG00000003222	cmss1	68	63.861	ENSMGAG00000014360	CMSS1	89	63.861	Meleagris_gallopavo
ENSHCOG00000003222	cmss1	100	35.254	ENSMAUG00000020609	Cmss1	100	36.964	Mesocricetus_auratus
ENSHCOG00000003222	cmss1	100	55.932	ENSMICG00000048977	CMSS1	100	53.041	Microcebus_murinus
ENSHCOG00000003222	cmss1	100	51.852	ENSMOCG00000021937	Cmss1	100	51.852	Microtus_ochrogaster
ENSHCOG00000003222	cmss1	69	76.355	ENSMMOG00000019794	cmss1	98	65.116	Mola_mola
ENSHCOG00000003222	cmss1	85	58.333	ENSMODG00000002275	CMSS1	94	58.333	Monodelphis_domestica
ENSHCOG00000003222	cmss1	100	67.458	ENSMALG00000004250	cmss1	100	67.458	Monopterus_albus
ENSHCOG00000003222	cmss1	100	54.237	MGP_CAROLIEiJ_G0020824	Cmss1	100	52.881	Mus_caroli
ENSHCOG00000003222	cmss1	100	53.559	ENSMUSG00000022748	Cmss1	100	52.203	Mus_musculus
ENSHCOG00000003222	cmss1	100	53.559	MGP_PahariEiJ_G0016524	Cmss1	100	52.203	Mus_pahari
ENSHCOG00000003222	cmss1	100	53.220	MGP_SPRETEiJ_G0021724	Cmss1	100	51.864	Mus_spretus
ENSHCOG00000003222	cmss1	74	64.679	ENSMPUG00000011324	CMSS1	84	64.679	Mustela_putorius_furo
ENSHCOG00000003222	cmss1	74	64.706	ENSMLUG00000001131	CMSS1	84	64.706	Myotis_lucifugus
ENSHCOG00000003222	cmss1	100	53.220	ENSNGAG00000020316	Cmss1	100	53.488	Nannospalax_galili
ENSHCOG00000003222	cmss1	100	69.932	ENSNBRG00000003095	cmss1	100	69.595	Neolamprologus_brichardi
ENSHCOG00000003222	cmss1	100	54.392	ENSNLEG00000034172	CMSS1	100	53.378	Nomascus_leucogenys
ENSHCOG00000003222	cmss1	68	56.436	ENSMEUG00000014505	CMSS1	89	56.436	Notamacropus_eugenii
ENSHCOG00000003222	cmss1	100	52.685	ENSOPRG00000002986	CMSS1	100	51.186	Ochotona_princeps
ENSHCOG00000003222	cmss1	100	44.407	ENSODEG00000009446	-	100	43.729	Octodon_degus
ENSHCOG00000003222	cmss1	100	46.980	ENSODEG00000001853	-	100	45.085	Octodon_degus
ENSHCOG00000003222	cmss1	100	51.007	ENSODEG00000003558	-	100	50.338	Octodon_degus
ENSHCOG00000003222	cmss1	100	53.667	ENSODEG00000005226	-	100	51.525	Octodon_degus
ENSHCOG00000003222	cmss1	77	77.434	ENSONIG00000006678	cmss1	97	73.913	Oreochromis_niloticus
ENSHCOG00000003222	cmss1	85	55.777	ENSOANG00000007529	CMSS1	98	60.526	Ornithorhynchus_anatinus
ENSHCOG00000003222	cmss1	68	64.356	ENSOCUG00000025366	CMSS1	79	62.557	Oryctolagus_cuniculus
ENSHCOG00000003222	cmss1	100	64.407	ENSORLG00000020340	cmss1	100	65.424	Oryzias_latipes
ENSHCOG00000003222	cmss1	72	68.246	ENSORLG00020012235	cmss1	86	67.980	Oryzias_latipes_hni
ENSHCOG00000003222	cmss1	69	67.488	ENSORLG00015015551	cmss1	76	67.488	Oryzias_latipes_hsok
ENSHCOG00000003222	cmss1	100	66.780	ENSOMEG00000012555	cmss1	100	66.780	Oryzias_melastigma
ENSHCOG00000003222	cmss1	74	64.840	ENSOGAG00000002045	CMSS1	96	64.840	Otolemur_garnettii
ENSHCOG00000003222	cmss1	74	63.182	ENSOARG00000017899	CMSS1	76	63.182	Ovis_aries
ENSHCOG00000003222	cmss1	100	52.203	ENSPPAG00000038515	CMSS1	81	62.667	Pan_paniscus
ENSHCOG00000003222	cmss1	100	54.576	ENSPPRG00000016767	CMSS1	100	52.542	Panthera_pardus
ENSHCOG00000003222	cmss1	100	54.237	ENSPTIG00000018274	CMSS1	100	52.542	Panthera_tigris_altaica
ENSHCOG00000003222	cmss1	100	54.054	ENSPTRG00000015157	CMSS1	100	53.356	Pan_troglodytes
ENSHCOG00000003222	cmss1	68	65.842	ENSPANG00000019980	CMSS1	88	63.111	Papio_anubis
ENSHCOG00000003222	cmss1	96	57.931	ENSPKIG00000012609	cmss1	97	57.664	Paramormyrops_kingsleyae
ENSHCOG00000003222	cmss1	78	61.472	ENSPSIG00000003849	CMSS1	100	61.472	Pelodiscus_sinensis
ENSHCOG00000003222	cmss1	69	77.941	ENSPMGG00000010286	cmss1	88	77.941	Periophthalmus_magnuspinnatus
ENSHCOG00000003222	cmss1	100	51.515	ENSPEMG00000016384	Cmss1	100	50.676	Peromyscus_maniculatus_bairdii
ENSHCOG00000003222	cmss1	69	52.451	ENSPMAG00000001146	cmss1	99	52.709	Petromyzon_marinus
ENSHCOG00000003222	cmss1	80	60.759	ENSPCIG00000015656	CMSS1	77	65.842	Phascolarctos_cinereus
ENSHCOG00000003222	cmss1	100	66.667	ENSPFOG00000016849	cmss1	100	66.667	Poecilia_formosa
ENSHCOG00000003222	cmss1	100	66.330	ENSPLAG00000008323	cmss1	100	66.330	Poecilia_latipinna
ENSHCOG00000003222	cmss1	100	66.113	ENSPMEG00000021020	cmss1	100	63.000	Poecilia_mexicana
ENSHCOG00000003222	cmss1	85	71.654	ENSPREG00000007618	cmss1	86	71.654	Poecilia_reticulata
ENSHCOG00000003222	cmss1	100	53.716	ENSPPYG00000013606	CMSS1	100	53.716	Pongo_abelii
ENSHCOG00000003222	cmss1	100	55.593	ENSPCOG00000020035	CMSS1	100	54.153	Propithecus_coquereli
ENSHCOG00000003222	cmss1	100	47.119	ENSPVAG00000017031	CMSS1	100	44.407	Pteropus_vampyrus
ENSHCOG00000003222	cmss1	91	66.914	ENSPNYG00000013428	cmss1	97	68.889	Pundamilia_nyererei
ENSHCOG00000003222	cmss1	100	57.190	ENSPNAG00000007912	cmss1	100	55.519	Pygocentrus_nattereri
ENSHCOG00000003222	cmss1	68	64.356	ENSRNOG00000027888	Cmss1	79	64.356	Rattus_norvegicus
ENSHCOG00000003222	cmss1	100	52.667	ENSRBIG00000037931	CMSS1	100	53.041	Rhinopithecus_bieti
ENSHCOG00000003222	cmss1	100	52.667	ENSRROG00000042910	CMSS1	100	53.041	Rhinopithecus_roxellana
ENSHCOG00000003222	cmss1	81	61.250	ENSSBOG00000030980	CMSS1	85	63.274	Saimiri_boliviensis_boliviensis
ENSHCOG00000003222	cmss1	68	65.347	ENSSHAG00000009321	CMSS1	80	65.347	Sarcophilus_harrisii
ENSHCOG00000003222	cmss1	100	58.497	ENSSFOG00015001509	cmss1	100	59.396	Scleropages_formosus
ENSHCOG00000003222	cmss1	100	69.932	ENSSMAG00000001653	cmss1	100	70.270	Scophthalmus_maximus
ENSHCOG00000003222	cmss1	100	68.896	ENSSDUG00000007719	cmss1	100	69.024	Seriola_dumerili
ENSHCOG00000003222	cmss1	70	83.092	ENSSLDG00000012300	cmss1	92	69.231	Seriola_lalandi_dorsalis
ENSHCOG00000003222	cmss1	100	42.904	ENSSARG00000003584	CMSS1	100	42.623	Sorex_araneus
ENSHCOG00000003222	cmss1	77	59.735	ENSSPUG00000003865	CMSS1	99	59.735	Sphenodon_punctatus
ENSHCOG00000003222	cmss1	96	68.198	ENSSPAG00000019182	cmss1	75	72.619	Stegastes_partitus
ENSHCOG00000003222	cmss1	100	54.237	ENSSSCG00000011970	CMSS1	100	52.703	Sus_scrofa
ENSHCOG00000003222	cmss1	68	63.366	ENSTGUG00000013635	CMSS1	88	63.366	Taeniopygia_guttata
ENSHCOG00000003222	cmss1	100	64.068	ENSTRUG00000015265	cmss1	100	63.729	Takifugu_rubripes
ENSHCOG00000003222	cmss1	69	68.966	ENSTNIG00000002880	cmss1	92	61.089	Tetraodon_nigroviridis
ENSHCOG00000003222	cmss1	74	46.575	ENSTBEG00000016722	CMSS1	78	46.575	Tupaia_belangeri
ENSHCOG00000003222	cmss1	100	54.237	ENSTTRG00000001562	CMSS1	100	52.349	Tursiops_truncatus
ENSHCOG00000003222	cmss1	74	64.384	ENSUAMG00000024209	CMSS1	98	64.384	Ursus_americanus
ENSHCOG00000003222	cmss1	74	63.927	ENSUMAG00000001983	CMSS1	85	63.927	Ursus_maritimus
ENSHCOG00000003222	cmss1	100	42.034	ENSVPAG00000000263	CMSS1	57	65.000	Vicugna_pacos
ENSHCOG00000003222	cmss1	74	64.840	ENSVVUG00000021647	-	89	64.840	Vulpes_vulpes
ENSHCOG00000003222	cmss1	74	64.516	ENSVVUG00000007776	-	85	64.516	Vulpes_vulpes
ENSHCOG00000003222	cmss1	100	48.814	ENSXETG00000011858	cmss1	100	47.119	Xenopus_tropicalis
ENSHCOG00000003222	cmss1	95	65.248	ENSXCOG00000018724	cmss1	70	78.818	Xiphophorus_couchianus
ENSHCOG00000003222	cmss1	71	78.846	ENSXMAG00000011243	cmss1	76	78.818	Xiphophorus_maculatus