EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003246 (Gene tree)
Gene ID: -
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 37267 bases
Position: chrKV880349.1:142993-180259
Accession: 109529100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018574	ResIII	PF04851.15	8.2e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010929	-	3813	XM_019892271	ENSHCOP00000018574	1270 (aa)	XP_019747830	-

Gene Model

Click here to download ENSHCOG00000003246's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003246's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003246	sbno1	81	54.219	ENSHCOG00000000884	si:ch73-63e15.2	77	54.219

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003246	sbno1	95	84.980	ENSG00000139697	SBNO1	93	84.980	Homo_sapiens
ENSHCOG00000003246	sbno1	80	93.491	ENSAPOG00000003196	sbno1	88	93.491	Acanthochromis_polyacanthus
ENSHCOG00000003246	sbno1	95	84.980	ENSAMEG00000015151	SBNO1	91	84.676	Ailuropoda_melanoleuca
ENSHCOG00000003246	sbno1	95	90.769	ENSACIG00000008088	sbno1	91	90.769	Amphilophus_citrinellus
ENSHCOG00000003246	sbno1	95	93.663	ENSAOCG00000014859	sbno1	90	93.294	Amphiprion_ocellaris
ENSHCOG00000003246	sbno1	95	93.465	ENSAPEG00000006069	sbno1	90	93.097	Amphiprion_percula
ENSHCOG00000003246	sbno1	95	94.246	ENSATEG00000006667	sbno1	91	94.246	Anabas_testudineus
ENSHCOG00000003246	sbno1	95	85.573	ENSAPLG00000015674	SBNO1	91	85.573	Anas_platyrhynchos
ENSHCOG00000003246	sbno1	95	84.980	ENSACAG00000015441	SBNO1	80	84.980	Anolis_carolinensis
ENSHCOG00000003246	sbno1	95	84.585	ENSANAG00000029958	-	91	86.649	Aotus_nancymaae
ENSHCOG00000003246	sbno1	95	83.811	ENSACLG00000024913	sbno1	97	82.440	Astatotilapia_calliptera
ENSHCOG00000003246	sbno1	95	87.525	ENSAMXG00000019473	sbno1	91	87.525	Astyanax_mexicanus
ENSHCOG00000003246	sbno1	95	84.980	ENSBTAG00000020505	SBNO1	93	84.980	Bos_taurus
ENSHCOG00000003246	sbno1	95	71.207	ENSCJAG00000016599	SBNO1	91	84.783	Callithrix_jacchus
ENSHCOG00000003246	sbno1	95	84.980	ENSCAFG00000007503	SBNO1	99	80.871	Canis_familiaris
ENSHCOG00000003246	sbno1	95	82.609	ENSCAFG00020015363	SBNO1	91	82.318	Canis_lupus_dingo
ENSHCOG00000003246	sbno1	95	84.980	ENSCHIG00000008382	SBNO1	93	84.980	Capra_hircus
ENSHCOG00000003246	sbno1	95	84.980	ENSTSYG00000012749	SBNO1	94	83.269	Carlito_syrichta
ENSHCOG00000003246	sbno1	92	85.178	ENSCAPG00000000384	SBNO1	89	85.178	Cavia_aperea
ENSHCOG00000003246	sbno1	95	85.178	ENSCPOG00000008109	SBNO1	91	85.178	Cavia_porcellus
ENSHCOG00000003246	sbno1	95	72.530	ENSCCAG00000035316	SBNO1	96	71.590	Cebus_capucinus
ENSHCOG00000003246	sbno1	92	84.980	ENSCATG00000008239	SBNO1	92	84.676	Cercocebus_atys
ENSHCOG00000003246	sbno1	95	85.178	ENSCLAG00000008995	SBNO1	91	85.178	Chinchilla_lanigera
ENSHCOG00000003246	sbno1	81	77.358	ENSCSAG00000002064	SBNO1	92	84.676	Chlorocebus_sabaeus
ENSHCOG00000003246	sbno1	88	93.467	ENSCHOG00000008814	SBNO1	84	93.467	Choloepus_hoffmanni
ENSHCOG00000003246	sbno1	95	85.375	ENSCPBG00000025968	SBNO1	92	85.375	Chrysemys_picta_bellii
ENSHCOG00000003246	sbno1	95	73.425	ENSCANG00000042688	-	91	77.996	Colobus_angolensis_palliatus
ENSHCOG00000003246	sbno1	95	83.794	ENSCGRG00001017470	Sbno1	91	83.497	Cricetulus_griseus_chok1gshd
ENSHCOG00000003246	sbno1	95	83.794	ENSCGRG00000004756	Sbno1	91	83.497	Cricetulus_griseus_crigri
ENSHCOG00000003246	sbno1	95	92.079	ENSCSEG00000011919	sbno1	91	92.079	Cynoglossus_semilaevis
ENSHCOG00000003246	sbno1	95	91.683	ENSCVAG00000007038	sbno1	92	91.683	Cyprinodon_variegatus
ENSHCOG00000003246	sbno1	95	85.328	ENSDARG00000099080	sbno1	92	85.328	Danio_rerio
ENSHCOG00000003246	sbno1	95	80.000	ENSDNOG00000017147	SBNO1	87	92.000	Dasypus_novemcinctus
ENSHCOG00000003246	sbno1	95	84.283	ENSDORG00000015261	Sbno1	91	84.283	Dipodomys_ordii
ENSHCOG00000003246	sbno1	88	90.511	ENSETEG00000005620	SBNO1	85	83.893	Echinops_telfairi
ENSHCOG00000003246	sbno1	71	84.264	ENSEBUG00000013823	sbno1	77	84.264	Eptatretus_burgeri
ENSHCOG00000003246	sbno1	52	75.959	ENSEASG00005012595	-	90	75.639	Equus_asinus_asinus
ENSHCOG00000003246	sbno1	95	85.178	ENSECAG00000006127	SBNO1	94	83.269	Equus_caballus
ENSHCOG00000003246	sbno1	73	90.948	ENSEEUG00000003793	SBNO1	68	90.948	Erinaceus_europaeus
ENSHCOG00000003246	sbno1	95	86.100	ENSELUG00000002886	sbno1	92	86.100	Esox_lucius
ENSHCOG00000003246	sbno1	95	84.980	ENSFCAG00000015331	SBNO1	91	84.980	Felis_catus
ENSHCOG00000003246	sbno1	95	85.573	ENSFALG00000009273	SBNO1	91	85.573	Ficedula_albicollis
ENSHCOG00000003246	sbno1	95	81.621	ENSFDAG00000014232	SBNO1	91	81.818	Fukomys_damarensis
ENSHCOG00000003246	sbno1	95	91.881	ENSFHEG00000007360	sbno1	91	91.881	Fundulus_heteroclitus
ENSHCOG00000003246	sbno1	92	88.294	ENSGMOG00000018229	sbno1	92	88.294	Gadus_morhua
ENSHCOG00000003246	sbno1	86	87.949	ENSGALG00000003392	SBNO1	93	87.949	Gallus_gallus
ENSHCOG00000003246	sbno1	95	92.277	ENSGAFG00000003960	sbno1	92	92.277	Gambusia_affinis
ENSHCOG00000003246	sbno1	92	91.321	ENSGACG00000015633	sbno1	91	91.321	Gasterosteus_aculeatus
ENSHCOG00000003246	sbno1	95	85.573	ENSGAGG00000001065	SBNO1	92	87.863	Gopherus_agassizii
ENSHCOG00000003246	sbno1	95	84.980	ENSGGOG00000015000	SBNO1	93	84.980	Gorilla_gorilla
ENSHCOG00000003246	sbno1	95	77.735	ENSHBUG00000011910	sbno1	96	76.389	Haplochromis_burtoni
ENSHCOG00000003246	sbno1	95	85.178	ENSHGLG00000014165	-	91	85.178	Heterocephalus_glaber_female
ENSHCOG00000003246	sbno1	95	84.837	ENSIPUG00000015830	Sbno1	92	90.000	Ictalurus_punctatus
ENSHCOG00000003246	sbno1	95	84.980	ENSSTOG00000023221	SBNO1	93	84.676	Ictidomys_tridecemlineatus
ENSHCOG00000003246	sbno1	95	84.676	ENSJJAG00000001741	Sbno1	91	84.676	Jaculus_jaculus
ENSHCOG00000003246	sbno1	95	92.475	ENSKMAG00000009696	sbno1	91	92.475	Kryptolebias_marmoratus
ENSHCOG00000003246	sbno1	95	91.485	ENSLBEG00000007623	sbno1	91	91.485	Labrus_bergylta
ENSHCOG00000003246	sbno1	80	86.216	ENSLACG00000017227	SBNO1	91	86.216	Latimeria_chalumnae
ENSHCOG00000003246	sbno1	95	86.047	ENSLOCG00000005725	sbno1	89	86.047	Lepisosteus_oculatus
ENSHCOG00000003246	sbno1	95	84.387	ENSLAFG00000002135	SBNO1	93	84.387	Loxodonta_africana
ENSHCOG00000003246	sbno1	95	84.676	ENSMFAG00000031429	SBNO1	92	86.992	Macaca_fascicularis
ENSHCOG00000003246	sbno1	95	84.676	ENSMMUG00000011496	SBNO1	93	84.676	Macaca_mulatta
ENSHCOG00000003246	sbno1	95	76.855	ENSMLEG00000033260	SBNO1	92	86.992	Mandrillus_leucophaeus
ENSHCOG00000003246	sbno1	95	94.455	ENSMAMG00000005473	sbno1	91	94.455	Mastacembelus_armatus
ENSHCOG00000003246	sbno1	95	85.771	ENSMGAG00000003274	SBNO1	93	87.949	Meleagris_gallopavo
ENSHCOG00000003246	sbno1	51	76.320	ENSMAUG00000004834	-	99	75.789	Mesocricetus_auratus
ENSHCOG00000003246	sbno1	95	81.423	ENSMICG00000006573	-	93	81.423	Microcebus_murinus
ENSHCOG00000003246	sbno1	95	77.170	ENSMOCG00000009390	Sbno1	96	76.656	Microtus_ochrogaster
ENSHCOG00000003246	sbno1	95	93.663	ENSMMOG00000008691	sbno1	90	93.663	Mola_mola
ENSHCOG00000003246	sbno1	95	85.375	ENSMODG00000012470	SBNO1	93	83.784	Monodelphis_domestica
ENSHCOG00000003246	sbno1	95	91.865	ENSMALG00000001056	sbno1	93	89.827	Monopterus_albus
ENSHCOG00000003246	sbno1	95	84.783	MGP_CAROLIEiJ_G0027749	Sbno1	95	89.474	Mus_caroli
ENSHCOG00000003246	sbno1	95	84.783	ENSMUSG00000038095	Sbno1	94	89.474	Mus_musculus
ENSHCOG00000003246	sbno1	95	71.566	MGP_PahariEiJ_G0024329	Sbno1	95	89.474	Mus_pahari
ENSHCOG00000003246	sbno1	95	84.783	MGP_SPRETEiJ_G0028747	Sbno1	95	89.474	Mus_spretus
ENSHCOG00000003246	sbno1	95	84.980	ENSMPUG00000001658	SBNO1	91	84.980	Mustela_putorius_furo
ENSHCOG00000003246	sbno1	95	84.387	ENSMLUG00000017159	SBNO1	91	84.387	Myotis_lucifugus
ENSHCOG00000003246	sbno1	95	84.980	ENSNGAG00000012620	Sbno1	92	83.269	Nannospalax_galili
ENSHCOG00000003246	sbno1	95	89.307	ENSNBRG00000019189	sbno1	91	89.307	Neolamprologus_brichardi
ENSHCOG00000003246	sbno1	95	75.502	ENSNLEG00000001502	SBNO1	93	79.804	Nomascus_leucogenys
ENSHCOG00000003246	sbno1	59	86.957	ENSMEUG00000008768	-	86	77.885	Notamacropus_eugenii
ENSHCOG00000003246	sbno1	95	83.235	ENSOPRG00000011054	SBNO1	91	82.941	Ochotona_princeps
ENSHCOG00000003246	sbno1	95	85.178	ENSODEG00000009997	SBNO1	91	85.178	Octodon_degus
ENSHCOG00000003246	sbno1	95	91.765	ENSONIG00000015348	sbno1	92	91.765	Oreochromis_niloticus
ENSHCOG00000003246	sbno1	95	84.783	ENSOCUG00000002441	SBNO1	88	84.783	Oryctolagus_cuniculus
ENSHCOG00000003246	sbno1	95	92.673	ENSORLG00000001593	sbno1	94	92.659	Oryzias_latipes
ENSHCOG00000003246	sbno1	95	92.475	ENSORLG00020015216	sbno1	92	92.475	Oryzias_latipes_hni
ENSHCOG00000003246	sbno1	95	92.871	ENSORLG00015002726	sbno1	92	92.871	Oryzias_latipes_hsok
ENSHCOG00000003246	sbno1	95	93.069	ENSOMEG00000019313	sbno1	92	93.069	Oryzias_melastigma
ENSHCOG00000003246	sbno1	51	74.251	ENSOGAG00000010781	-	99	74.548	Otolemur_garnettii
ENSHCOG00000003246	sbno1	95	84.980	ENSOARG00000004404	SBNO1	93	84.980	Ovis_aries
ENSHCOG00000003246	sbno1	95	84.980	ENSPPAG00000024635	SBNO1	93	84.980	Pan_paniscus
ENSHCOG00000003246	sbno1	95	84.980	ENSPPRG00000022092	SBNO1	91	84.980	Panthera_pardus
ENSHCOG00000003246	sbno1	95	84.980	ENSPTIG00000017803	SBNO1	91	84.980	Panthera_tigris_altaica
ENSHCOG00000003246	sbno1	95	84.980	ENSPTRG00000005597	SBNO1	93	84.980	Pan_troglodytes
ENSHCOG00000003246	sbno1	95	77.492	ENSPANG00000011640	SBNO1	94	86.992	Papio_anubis
ENSHCOG00000003246	sbno1	95	85.328	ENSPKIG00000001441	sbno1	92	85.328	Paramormyrops_kingsleyae
ENSHCOG00000003246	sbno1	90	82.086	ENSPSIG00000009256	-	94	82.086	Pelodiscus_sinensis
ENSHCOG00000003246	sbno1	95	85.178	ENSPSIG00000009572	-	91	85.178	Pelodiscus_sinensis
ENSHCOG00000003246	sbno1	95	84.585	ENSPEMG00000016087	Sbno1	92	83.237	Peromyscus_maniculatus_bairdii
ENSHCOG00000003246	sbno1	95	85.375	ENSPCIG00000010985	SBNO1	92	83.591	Phascolarctos_cinereus
ENSHCOG00000003246	sbno1	95	92.277	ENSPFOG00000005069	sbno1	92	92.277	Poecilia_formosa
ENSHCOG00000003246	sbno1	95	92.277	ENSPLAG00000015015	sbno1	92	92.277	Poecilia_latipinna
ENSHCOG00000003246	sbno1	95	92.277	ENSPMEG00000021212	sbno1	92	92.277	Poecilia_mexicana
ENSHCOG00000003246	sbno1	95	91.865	ENSPREG00000017746	sbno1	92	91.865	Poecilia_reticulata
ENSHCOG00000003246	sbno1	95	84.980	ENSPPYG00000005084	SBNO1	91	84.980	Pongo_abelii
ENSHCOG00000003246	sbno1	89	66.667	ENSPCAG00000008634	SBNO1	83	66.714	Procavia_capensis
ENSHCOG00000003246	sbno1	95	84.585	ENSPCOG00000024277	SBNO1	93	84.585	Propithecus_coquereli
ENSHCOG00000003246	sbno1	88	84.716	ENSPVAG00000015304	SBNO1	83	84.716	Pteropus_vampyrus
ENSHCOG00000003246	sbno1	95	90.698	ENSPNYG00000004291	sbno1	92	91.765	Pundamilia_nyererei
ENSHCOG00000003246	sbno1	95	86.796	ENSPNAG00000015622	sbno1	92	86.796	Pygocentrus_nattereri
ENSHCOG00000003246	sbno1	95	84.585	ENSRNOG00000001064	Sbno1	91	87.158	Rattus_norvegicus
ENSHCOG00000003246	sbno1	95	77.492	ENSRROG00000034230	SBNO1	93	84.676	Rhinopithecus_roxellana
ENSHCOG00000003246	sbno1	92	70.840	ENSSBOG00000015422	SBNO1	90	78.656	Saimiri_boliviensis_boliviensis
ENSHCOG00000003246	sbno1	95	86.240	ENSSFOG00015019025	sbno1	92	86.240	Scleropages_formosus
ENSHCOG00000003246	sbno1	95	92.673	ENSSMAG00000013640	sbno1	91	92.673	Scophthalmus_maximus
ENSHCOG00000003246	sbno1	95	93.861	ENSSDUG00000023480	sbno1	91	93.861	Seriola_dumerili
ENSHCOG00000003246	sbno1	95	93.465	ENSSLDG00000007928	sbno1	91	93.465	Seriola_lalandi_dorsalis
ENSHCOG00000003246	sbno1	85	84.980	ENSSARG00000002594	SBNO1	81	84.980	Sorex_araneus
ENSHCOG00000003246	sbno1	95	84.783	ENSSPUG00000012640	SBNO1	91	84.783	Sphenodon_punctatus
ENSHCOG00000003246	sbno1	95	93.861	ENSSPAG00000016244	sbno1	91	93.861	Stegastes_partitus
ENSHCOG00000003246	sbno1	95	84.980	ENSSSCG00000009776	SBNO1	91	84.980	Sus_scrofa
ENSHCOG00000003246	sbno1	95	85.573	ENSTGUG00000005380	SBNO1	91	85.573	Taeniopygia_guttata
ENSHCOG00000003246	sbno1	95	90.079	ENSTRUG00000018490	sbno1	91	90.079	Takifugu_rubripes
ENSHCOG00000003246	sbno1	56	76.598	ENSTNIG00000013506	sbno1	97	75.290	Tetraodon_nigroviridis
ENSHCOG00000003246	sbno1	95	84.980	ENSUAMG00000019671	SBNO1	91	84.676	Ursus_americanus
ENSHCOG00000003246	sbno1	95	84.980	ENSUMAG00000004002	SBNO1	91	84.676	Ursus_maritimus
ENSHCOG00000003246	sbno1	89	77.727	ENSVPAG00000007024	SBNO1	89	77.427	Vicugna_pacos
ENSHCOG00000003246	sbno1	95	84.980	ENSVVUG00000027807	SBNO1	91	84.676	Vulpes_vulpes
ENSHCOG00000003246	sbno1	85	85.658	ENSXETG00000031930	SBNO1	78	85.658	Xenopus_tropicalis
ENSHCOG00000003246	sbno1	85	91.005	ENSXCOG00000011607	sbno1	90	90.765	Xiphophorus_couchianus
ENSHCOG00000003246	sbno1	95	92.079	ENSXMAG00000002140	sbno1	91	92.079	Xiphophorus_maculatus