EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003258 (Gene tree)
Gene ID: 109524366
Gene Symbol: polr1d
Alias: im:7162148|zgc:136449
Full Name: DNA-directed RNA polymerases I and III subunit RPAC2-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 7983 bases
Position: chrKV880218.1:6756498-6764480
Accession: 109524366
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018599	RNA_pol_L_2	PF13656.6	6.8e-30	1	1
ENSHCOP00000018599	RNA_pol_L	PF01193.24	5.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010860	-	1225	XM_019884170	ENSHCOP00000018599	114 (aa)	XP_019739729	UPI00094EEF9C

Gene Model

Click here to download ENSHCOG00000003258's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03020	RNA polymerase	KEGG
hcq04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003258's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003258	polr1d	94	37.383	ENSHCOG00000014827	polr2j	59	37.383

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003258	polr1d	94	69.159	ENSG00000186184	POLR1D	92	69.159	Homo_sapiens
ENSHCOG00000003258	polr1d	89	79.412	ENSAPOG00000021882	polr1d	96	79.412	Acanthochromis_polyacanthus
ENSHCOG00000003258	polr1d	94	70.093	ENSAMEG00000019095	POLR1D	86	70.093	Ailuropoda_melanoleuca
ENSHCOG00000003258	polr1d	100	80.000	ENSACIG00000013328	polr1d	100	80.000	Amphilophus_citrinellus
ENSHCOG00000003258	polr1d	100	77.193	ENSAOCG00000018500	polr1d	100	77.193	Amphiprion_ocellaris
ENSHCOG00000003258	polr1d	100	77.193	ENSAPEG00000009489	polr1d	100	77.193	Amphiprion_percula
ENSHCOG00000003258	polr1d	100	79.825	ENSATEG00000019322	polr1d	100	79.825	Anabas_testudineus
ENSHCOG00000003258	polr1d	100	63.793	ENSACAG00000015753	POLR1D	100	63.793	Anolis_carolinensis
ENSHCOG00000003258	polr1d	94	69.159	ENSANAG00000024486	POLR1D	80	69.159	Aotus_nancymaae
ENSHCOG00000003258	polr1d	100	83.333	ENSACLG00000023805	polr1d	100	83.333	Astatotilapia_calliptera
ENSHCOG00000003258	polr1d	99	73.451	ENSAMXG00000036118	polr1d	98	73.451	Astyanax_mexicanus
ENSHCOG00000003258	polr1d	94	68.224	ENSBTAG00000008642	POLR1D	80	68.224	Bos_taurus
ENSHCOG00000003258	polr1d	94	68.224	ENSBTAG00000033252	-	80	68.224	Bos_taurus
ENSHCOG00000003258	polr1d	70	41.250	WBGene00010230	rpac-19	56	41.250	Caenorhabditis_elegans
ENSHCOG00000003258	polr1d	94	69.159	ENSCJAG00000044669	POLR1D	80	69.159	Callithrix_jacchus
ENSHCOG00000003258	polr1d	94	70.093	ENSCAFG00000006755	POLR1D	80	70.093	Canis_familiaris
ENSHCOG00000003258	polr1d	94	69.159	ENSCHIG00000021910	POLR1D	80	69.159	Capra_hircus
ENSHCOG00000003258	polr1d	93	60.185	ENSTSYG00000034852	-	89	60.185	Carlito_syrichta
ENSHCOG00000003258	polr1d	93	69.811	ENSTSYG00000026817	-	80	69.811	Carlito_syrichta
ENSHCOG00000003258	polr1d	57	56.923	ENSCAPG00000006058	-	66	56.923	Cavia_aperea
ENSHCOG00000003258	polr1d	58	56.061	ENSCPOG00000030450	-	67	56.061	Cavia_porcellus
ENSHCOG00000003258	polr1d	94	54.206	ENSCCAG00000020191	-	78	54.206	Cebus_capucinus
ENSHCOG00000003258	polr1d	94	70.093	ENSCCAG00000021349	-	80	70.093	Cebus_capucinus
ENSHCOG00000003258	polr1d	93	60.377	ENSCATG00000022900	-	79	60.377	Cercocebus_atys
ENSHCOG00000003258	polr1d	94	69.159	ENSCATG00000030710	-	80	69.159	Cercocebus_atys
ENSHCOG00000003258	polr1d	94	68.224	ENSCLAG00000017623	POLR1D	86	68.224	Chinchilla_lanigera
ENSHCOG00000003258	polr1d	88	74.000	ENSCPBG00000004719	POLR1D	99	74.000	Chrysemys_picta_bellii
ENSHCOG00000003258	polr1d	94	67.290	ENSCANG00000037694	-	80	67.290	Colobus_angolensis_palliatus
ENSHCOG00000003258	polr1d	94	69.159	ENSCANG00000028632	-	80	69.159	Colobus_angolensis_palliatus
ENSHCOG00000003258	polr1d	94	68.224	ENSCGRG00001021251	Polr1d	80	68.224	Cricetulus_griseus_chok1gshd
ENSHCOG00000003258	polr1d	94	68.224	ENSCGRG00000011639	Polr1d	80	68.224	Cricetulus_griseus_crigri
ENSHCOG00000003258	polr1d	93	80.189	ENSCSEG00000018268	polr1d	100	76.923	Cynoglossus_semilaevis
ENSHCOG00000003258	polr1d	100	80.702	ENSCVAG00000018527	polr1d	100	80.702	Cyprinodon_variegatus
ENSHCOG00000003258	polr1d	95	72.222	ENSDARG00000037570	polr1d	96	72.222	Danio_rerio
ENSHCOG00000003258	polr1d	94	68.224	ENSDNOG00000043676	-	80	68.224	Dasypus_novemcinctus
ENSHCOG00000003258	polr1d	94	67.290	ENSDNOG00000046247	-	80	67.290	Dasypus_novemcinctus
ENSHCOG00000003258	polr1d	94	69.159	ENSDORG00000029155	Polr1d	80	69.159	Dipodomys_ordii
ENSHCOG00000003258	polr1d	84	45.833	FBgn0086447	l(2)37Cg	90	45.833	Drosophila_melanogaster
ENSHCOG00000003258	polr1d	94	69.159	ENSETEG00000012797	POLR1D	86	69.159	Echinops_telfairi
ENSHCOG00000003258	polr1d	76	65.517	ENSEBUG00000011748	polr1d	61	65.517	Eptatretus_burgeri
ENSHCOG00000003258	polr1d	96	70.909	ENSEASG00005022487	POLR1D	85	70.909	Equus_asinus_asinus
ENSHCOG00000003258	polr1d	91	72.115	ENSEEUG00000013144	POLR1D	84	72.115	Erinaceus_europaeus
ENSHCOG00000003258	polr1d	96	72.727	ENSELUG00000005105	rpac2	96	72.727	Esox_lucius
ENSHCOG00000003258	polr1d	94	70.093	ENSFCAG00000030162	POLR1D	80	70.093	Felis_catus
ENSHCOG00000003258	polr1d	88	70.000	ENSFALG00000011463	POLR1D	99	70.000	Ficedula_albicollis
ENSHCOG00000003258	polr1d	94	67.290	ENSFDAG00000004463	POLR1D	80	67.290	Fukomys_damarensis
ENSHCOG00000003258	polr1d	100	79.825	ENSFHEG00000015410	polr1d	99	79.825	Fundulus_heteroclitus
ENSHCOG00000003258	polr1d	58	63.636	ENSGALG00000007470	POLR1D	65	63.636	Gallus_gallus
ENSHCOG00000003258	polr1d	100	82.456	ENSGAFG00000001693	polr1d	100	82.456	Gambusia_affinis
ENSHCOG00000003258	polr1d	96	77.982	ENSGACG00000018585	polr1d	92	77.982	Gasterosteus_aculeatus
ENSHCOG00000003258	polr1d	100	72.807	ENSGAGG00000008503	POLR1D	100	72.807	Gopherus_agassizii
ENSHCOG00000003258	polr1d	94	69.159	ENSGGOG00000004235	POLR1D	80	69.159	Gorilla_gorilla
ENSHCOG00000003258	polr1d	100	83.333	ENSHBUG00000002111	polr1d	100	83.333	Haplochromis_burtoni
ENSHCOG00000003258	polr1d	94	66.355	ENSHGLG00000003202	POLR1D	80	66.355	Heterocephalus_glaber_female
ENSHCOG00000003258	polr1d	94	66.355	ENSHGLG00100009393	POLR1D	80	66.355	Heterocephalus_glaber_male
ENSHCOG00000003258	polr1d	96	74.312	ENSIPUG00000014810	polr1d	95	74.312	Ictalurus_punctatus
ENSHCOG00000003258	polr1d	94	69.159	ENSSTOG00000013877	POLR1D	80	69.159	Ictidomys_tridecemlineatus
ENSHCOG00000003258	polr1d	94	52.336	ENSJJAG00000021667	-	63	52.336	Jaculus_jaculus
ENSHCOG00000003258	polr1d	94	66.355	ENSJJAG00000022671	-	89	66.355	Jaculus_jaculus
ENSHCOG00000003258	polr1d	100	78.947	ENSKMAG00000015256	polr1d	100	78.947	Kryptolebias_marmoratus
ENSHCOG00000003258	polr1d	100	81.579	ENSLBEG00000015919	polr1d	100	81.579	Labrus_bergylta
ENSHCOG00000003258	polr1d	92	65.714	ENSLACG00000006810	POLR1D	88	65.714	Latimeria_chalumnae
ENSHCOG00000003258	polr1d	61	75.362	ENSLOCG00000014976	polr1d	93	75.362	Lepisosteus_oculatus
ENSHCOG00000003258	polr1d	95	68.519	ENSLAFG00000032290	POLR1D	81	68.519	Loxodonta_africana
ENSHCOG00000003258	polr1d	94	69.159	ENSMFAG00000045264	POLR1D	83	69.159	Macaca_fascicularis
ENSHCOG00000003258	polr1d	76	63.218	ENSMMUG00000041570	-	78	63.218	Macaca_mulatta
ENSHCOG00000003258	polr1d	94	69.159	ENSMMUG00000020386	POLR1D	92	69.159	Macaca_mulatta
ENSHCOG00000003258	polr1d	94	69.159	ENSMNEG00000008630	-	80	69.159	Macaca_nemestrina
ENSHCOG00000003258	polr1d	94	55.140	ENSMNEG00000038120	-	78	55.140	Macaca_nemestrina
ENSHCOG00000003258	polr1d	94	59.813	ENSMLEG00000032251	-	79	59.813	Mandrillus_leucophaeus
ENSHCOG00000003258	polr1d	94	69.159	ENSMLEG00000041048	-	80	69.159	Mandrillus_leucophaeus
ENSHCOG00000003258	polr1d	89	81.373	ENSMAMG00000014834	polr1d	95	81.373	Mastacembelus_armatus
ENSHCOG00000003258	polr1d	91	80.769	ENSMZEG00005006638	polr1d	92	80.769	Maylandia_zebra
ENSHCOG00000003258	polr1d	81	72.826	ENSMGAG00000005322	POLR1D	84	72.826	Meleagris_gallopavo
ENSHCOG00000003258	polr1d	94	68.224	ENSMAUG00000001946	Polr1d	80	68.224	Mesocricetus_auratus
ENSHCOG00000003258	polr1d	94	68.224	ENSMICG00000016883	-	80	68.224	Microcebus_murinus
ENSHCOG00000003258	polr1d	87	60.606	ENSMICG00000007349	-	73	60.606	Microcebus_murinus
ENSHCOG00000003258	polr1d	94	67.290	ENSMOCG00000021288	Polr1d	80	67.290	Microtus_ochrogaster
ENSHCOG00000003258	polr1d	100	78.947	ENSMMOG00000009605	polr1d	100	78.947	Mola_mola
ENSHCOG00000003258	polr1d	100	70.175	ENSMODG00000023881	POLR1D	100	70.175	Monodelphis_domestica
ENSHCOG00000003258	polr1d	100	78.947	ENSMALG00000010652	polr1d	100	78.947	Monopterus_albus
ENSHCOG00000003258	polr1d	91	68.269	MGP_CAROLIEiJ_G0028034	Polr1d	78	68.269	Mus_caroli
ENSHCOG00000003258	polr1d	94	67.290	ENSMUSG00000029642	Polr1d	80	67.290	Mus_musculus
ENSHCOG00000003258	polr1d	94	67.290	MGP_PahariEiJ_G0024600	Polr1d	80	67.290	Mus_pahari
ENSHCOG00000003258	polr1d	94	68.224	MGP_SPRETEiJ_G0029032	Polr1d	80	68.224	Mus_spretus
ENSHCOG00000003258	polr1d	94	69.159	ENSMLUG00000027169	-	80	69.159	Myotis_lucifugus
ENSHCOG00000003258	polr1d	94	63.551	ENSMLUG00000004118	-	80	63.551	Myotis_lucifugus
ENSHCOG00000003258	polr1d	95	68.519	ENSNGAG00000006014	Polr1d	93	68.519	Nannospalax_galili
ENSHCOG00000003258	polr1d	100	83.333	ENSNBRG00000020327	polr1d	100	83.333	Neolamprologus_brichardi
ENSHCOG00000003258	polr1d	94	69.159	ENSNLEG00000000358	POLR1D	80	69.159	Nomascus_leucogenys
ENSHCOG00000003258	polr1d	93	59.434	ENSODEG00000014801	-	77	59.434	Octodon_degus
ENSHCOG00000003258	polr1d	93	68.868	ENSODEG00000005294	-	80	68.868	Octodon_degus
ENSHCOG00000003258	polr1d	95	74.074	ENSOANG00000008708	-	100	74.074	Ornithorhynchus_anatinus
ENSHCOG00000003258	polr1d	94	69.159	ENSOCUG00000015706	POLR1D	66	69.159	Oryctolagus_cuniculus
ENSHCOG00000003258	polr1d	100	74.561	ENSORLG00000010257	polr1d	100	74.561	Oryzias_latipes
ENSHCOG00000003258	polr1d	100	74.561	ENSORLG00020000533	polr1d	77	74.561	Oryzias_latipes_hni
ENSHCOG00000003258	polr1d	100	75.439	ENSORLG00015013267	polr1d	75	75.439	Oryzias_latipes_hsok
ENSHCOG00000003258	polr1d	100	75.439	ENSOMEG00000014912	polr1d	76	75.439	Oryzias_melastigma
ENSHCOG00000003258	polr1d	98	67.857	ENSOGAG00000014601	POLR1D	84	67.857	Otolemur_garnettii
ENSHCOG00000003258	polr1d	94	69.159	ENSOARG00000017005	POLR1D	82	69.159	Ovis_aries
ENSHCOG00000003258	polr1d	94	69.159	ENSPPAG00000028138	POLR1D	80	69.159	Pan_paniscus
ENSHCOG00000003258	polr1d	94	70.093	ENSPPRG00000003381	POLR1D	80	70.093	Panthera_pardus
ENSHCOG00000003258	polr1d	94	70.093	ENSPTIG00000018137	POLR1D	80	70.093	Panthera_tigris_altaica
ENSHCOG00000003258	polr1d	94	69.159	ENSPTRG00000005734	POLR1D	80	69.159	Pan_troglodytes
ENSHCOG00000003258	polr1d	94	58.879	ENSPANG00000035051	-	79	58.879	Papio_anubis
ENSHCOG00000003258	polr1d	94	69.159	ENSPANG00000020259	-	80	69.159	Papio_anubis
ENSHCOG00000003258	polr1d	95	66.667	ENSPKIG00000021891	polr1d	91	54.783	Paramormyrops_kingsleyae
ENSHCOG00000003258	polr1d	100	69.298	ENSPSIG00000011822	POLR1D	88	69.298	Pelodiscus_sinensis
ENSHCOG00000003258	polr1d	100	72.807	ENSPMGG00000010359	polr1d	99	72.807	Periophthalmus_magnuspinnatus
ENSHCOG00000003258	polr1d	100	65.789	ENSPMGG00000012998	POLR1D	84	65.789	Periophthalmus_magnuspinnatus
ENSHCOG00000003258	polr1d	94	67.290	ENSPEMG00000006336	-	82	67.290	Peromyscus_maniculatus_bairdii
ENSHCOG00000003258	polr1d	92	57.143	ENSPMAG00000004228	polr1d	88	57.143	Petromyzon_marinus
ENSHCOG00000003258	polr1d	100	69.298	ENSPCIG00000001673	POLR1D	100	69.298	Phascolarctos_cinereus
ENSHCOG00000003258	polr1d	100	82.456	ENSPFOG00000023343	polr1d	100	83.908	Poecilia_formosa
ENSHCOG00000003258	polr1d	100	82.456	ENSPLAG00000009675	polr1d	100	82.456	Poecilia_latipinna
ENSHCOG00000003258	polr1d	100	82.456	ENSPMEG00000004628	polr1d	100	82.456	Poecilia_mexicana
ENSHCOG00000003258	polr1d	100	82.456	ENSPREG00000022032	polr1d	100	82.456	Poecilia_reticulata
ENSHCOG00000003258	polr1d	94	67.290	ENSPCOG00000028175	POLR1D	80	67.290	Propithecus_coquereli
ENSHCOG00000003258	polr1d	100	83.333	ENSPNYG00000000107	polr1d	100	83.333	Pundamilia_nyererei
ENSHCOG00000003258	polr1d	96	68.807	ENSPNAG00000001512	polr1d	95	67.257	Pygocentrus_nattereri
ENSHCOG00000003258	polr1d	94	65.421	ENSRBIG00000000336	-	80	65.421	Rhinopithecus_bieti
ENSHCOG00000003258	polr1d	94	69.159	ENSRBIG00000036378	-	80	69.159	Rhinopithecus_bieti
ENSHCOG00000003258	polr1d	94	69.159	ENSRROG00000042232	-	80	69.159	Rhinopithecus_roxellana
ENSHCOG00000003258	polr1d	94	66.355	ENSRROG00000026751	-	80	66.355	Rhinopithecus_roxellana
ENSHCOG00000003258	polr1d	82	48.387	YNL113W	RPC19	67	48.421	Saccharomyces_cerevisiae
ENSHCOG00000003258	polr1d	84	69.792	ENSSBOG00000030146	-	71	69.792	Saimiri_boliviensis_boliviensis
ENSHCOG00000003258	polr1d	94	69.159	ENSSBOG00000028482	-	80	69.159	Saimiri_boliviensis_boliviensis
ENSHCOG00000003258	polr1d	96	72.072	ENSSHAG00000001190	POLR1D	86	72.072	Sarcophilus_harrisii
ENSHCOG00000003258	polr1d	95	71.296	ENSSFOG00015011375	polr1d	95	71.296	Scleropages_formosus
ENSHCOG00000003258	polr1d	100	80.702	ENSSMAG00000011861	polr1d	100	80.702	Scophthalmus_maximus
ENSHCOG00000003258	polr1d	100	80.702	ENSSDUG00000011930	polr1d	100	80.702	Seriola_dumerili
ENSHCOG00000003258	polr1d	99	73.684	ENSSLDG00000023871	polr1d	97	73.684	Seriola_lalandi_dorsalis
ENSHCOG00000003258	polr1d	94	70.093	ENSSARG00000007840	POLR1D	80	70.093	Sorex_araneus
ENSHCOG00000003258	polr1d	93	72.642	ENSSPUG00000005786	POLR1D	95	70.270	Sphenodon_punctatus
ENSHCOG00000003258	polr1d	100	81.579	ENSSPAG00000011764	polr1d	100	81.579	Stegastes_partitus
ENSHCOG00000003258	polr1d	91	70.192	ENSSSCG00000009310	POLR1D	78	70.192	Sus_scrofa
ENSHCOG00000003258	polr1d	84	70.833	ENSTGUG00000005450	POLR1D	100	70.833	Taeniopygia_guttata
ENSHCOG00000003258	polr1d	100	75.439	ENSTRUG00000019741	polr1d	100	75.439	Takifugu_rubripes
ENSHCOG00000003258	polr1d	98	66.964	ENSTBEG00000007006	POLR1D	90	66.964	Tupaia_belangeri
ENSHCOG00000003258	polr1d	94	70.093	ENSUAMG00000011413	POLR1D	80	70.093	Ursus_americanus
ENSHCOG00000003258	polr1d	94	70.093	ENSUMAG00000016968	POLR1D	84	70.093	Ursus_maritimus
ENSHCOG00000003258	polr1d	94	70.093	ENSVVUG00000009216	POLR1D	80	70.093	Vulpes_vulpes
ENSHCOG00000003258	polr1d	88	83.000	ENSXCOG00000011731	polr1d	77	83.000	Xiphophorus_couchianus
ENSHCOG00000003258	polr1d	88	83.000	ENSXMAG00000017538	polr1d	77	83.000	Xiphophorus_maculatus