EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003345 (Gene tree)
Gene ID: 109515771
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 18270 bases
Position: chrKV879952.1:5932606-5950875
Accession: 109515771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000002215	RNA_pol_Rpb1_5	PF04998.17	2.1e-99	1	1
ENSHCOP00000002215	RNA_pol_Rpb1_4	PF05000.17	1e-21	1	1
ENSHCOP00000002215	RNA_pol_Rpb1_2	PF00623.20	1.4e-67	1	1
ENSHCOP00000002215	RNA_pol_Rpb1_3	PF04983.18	1.9e-36	1	1
ENSHCOP00000002215	RNA_pol_Rpb1_1	PF04997.12	2.2e-20	1	1
ENSHCOP00000018642	RNA_pol_Rpb1_1	PF04997.12	4.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010734	-	883	-	ENSHCOP00000018642	268 (aa)	-	-
ENSHCOT00000010790	-	4818	XM_019869765	ENSHCOP00000002215	1605 (aa)	XP_019725324	-

Gene Model

Click here to download ENSHCOG00000003345's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003345's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003345	polr1a	71	32.255	ENSHCOG00000011874	polr2a	56	32.470
ENSHCOG00000003345	polr1a	66	47.368	ENSHCOG00000001075	polr3a	70	47.368

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003345	polr1a	100	62.543	ENSG00000068654	POLR1A	100	62.587	Homo_sapiens
ENSHCOG00000003345	polr1a	99	73.881	ENSAPOG00000017945	polr1a	99	77.436	Acanthochromis_polyacanthus
ENSHCOG00000003345	polr1a	100	62.688	ENSAMEG00000005807	POLR1A	100	63.571	Ailuropoda_melanoleuca
ENSHCOG00000003345	polr1a	100	78.454	ENSACIG00000022147	polr1a	100	78.611	Amphilophus_citrinellus
ENSHCOG00000003345	polr1a	100	79.432	ENSAOCG00000017336	polr1a	100	79.432	Amphiprion_ocellaris
ENSHCOG00000003345	polr1a	100	79.778	ENSAPEG00000016105	polr1a	100	79.778	Amphiprion_percula
ENSHCOG00000003345	polr1a	100	76.873	ENSATEG00000016773	polr1a	100	77.173	Anabas_testudineus
ENSHCOG00000003345	polr1a	86	66.879	ENSAPLG00000013871	POLR1A	96	66.221	Anas_platyrhynchos
ENSHCOG00000003345	polr1a	99	62.016	ENSACAG00000012141	POLR1A	99	61.877	Anolis_carolinensis
ENSHCOG00000003345	polr1a	100	61.973	ENSANAG00000033927	POLR1A	100	61.795	Aotus_nancymaae
ENSHCOG00000003345	polr1a	100	76.386	ENSACLG00000020541	polr1a	100	76.705	Astatotilapia_calliptera
ENSHCOG00000003345	polr1a	84	65.333	ENSAMXG00000011559	-	80	65.333	Astyanax_mexicanus
ENSHCOG00000003345	polr1a	100	62.912	ENSBTAG00000006481	POLR1A	100	62.680	Bos_taurus
ENSHCOG00000003345	polr1a	95	41.278	WBGene00012999	rpoa-1	77	58.696	Caenorhabditis_elegans
ENSHCOG00000003345	polr1a	100	61.530	ENSCJAG00000019547	POLR1A	100	62.284	Callithrix_jacchus
ENSHCOG00000003345	polr1a	100	62.254	ENSCAFG00000007613	POLR1A	100	62.190	Canis_familiaris
ENSHCOG00000003345	polr1a	95	69.444	ENSCAFG00020014752	POLR1A	100	63.935	Canis_lupus_dingo
ENSHCOG00000003345	polr1a	100	62.885	ENSCHIG00000018204	POLR1A	100	62.262	Capra_hircus
ENSHCOG00000003345	polr1a	100	61.255	ENSTSYG00000002761	POLR1A	100	61.490	Carlito_syrichta
ENSHCOG00000003345	polr1a	97	59.581	ENSCAPG00000010132	POLR1A	99	59.807	Cavia_aperea
ENSHCOG00000003345	polr1a	100	61.721	ENSCPOG00000012350	POLR1A	100	61.949	Cavia_porcellus
ENSHCOG00000003345	polr1a	100	62.017	ENSCCAG00000019839	POLR1A	100	62.572	Cebus_capucinus
ENSHCOG00000003345	polr1a	100	62.081	ENSCATG00000029786	POLR1A	100	62.154	Cercocebus_atys
ENSHCOG00000003345	polr1a	100	61.760	ENSCLAG00000005187	POLR1A	100	62.009	Chinchilla_lanigera
ENSHCOG00000003345	polr1a	100	61.676	ENSCSAG00000016251	POLR1A	100	62.033	Chlorocebus_sabaeus
ENSHCOG00000003345	polr1a	99	50.183	ENSCHOG00000003766	-	84	79.397	Choloepus_hoffmanni
ENSHCOG00000003345	polr1a	99	62.937	ENSCPBG00000001115	POLR1A	99	63.456	Chrysemys_picta_bellii
ENSHCOG00000003345	polr1a	94	51.169	ENSCSAVG00000007184	-	91	50.103	Ciona_savignyi
ENSHCOG00000003345	polr1a	100	59.734	ENSCANG00000031785	POLR1A	100	59.472	Colobus_angolensis_palliatus
ENSHCOG00000003345	polr1a	96	63.671	ENSCGRG00001006651	Polr1a	100	63.934	Cricetulus_griseus_chok1gshd
ENSHCOG00000003345	polr1a	63	63.733	ENSCGRG00000010834	Polr1a	100	63.996	Cricetulus_griseus_crigri
ENSHCOG00000003345	polr1a	99	54.286	ENSCGRG00000007004	-	97	54.286	Cricetulus_griseus_crigri
ENSHCOG00000003345	polr1a	100	73.381	ENSCSEG00000020190	polr1a	100	73.381	Cynoglossus_semilaevis
ENSHCOG00000003345	polr1a	100	73.215	ENSCVAG00000020941	polr1a	100	73.451	Cyprinodon_variegatus
ENSHCOG00000003345	polr1a	100	69.444	ENSDARG00000098375	polr1a	100	69.444	Danio_rerio
ENSHCOG00000003345	polr1a	100	59.539	ENSDNOG00000010829	POLR1A	100	59.977	Dasypus_novemcinctus
ENSHCOG00000003345	polr1a	100	62.899	ENSDORG00000008298	Polr1a	100	62.594	Dipodomys_ordii
ENSHCOG00000003345	polr1a	73	49.761	FBgn0019938	RpI1	89	46.729	Drosophila_melanogaster
ENSHCOG00000003345	polr1a	70	87.500	ENSETEG00000000412	-	71	87.500	Echinops_telfairi
ENSHCOG00000003345	polr1a	86	49.892	ENSEBUG00000005667	-	91	50.143	Eptatretus_burgeri
ENSHCOG00000003345	polr1a	100	62.681	ENSEASG00005001625	POLR1A	100	62.738	Equus_asinus_asinus
ENSHCOG00000003345	polr1a	100	62.840	ENSECAG00000030510	-	100	64.901	Equus_caballus
ENSHCOG00000003345	polr1a	100	62.840	ENSECAG00000010092	POLR1A	100	64.901	Equus_caballus
ENSHCOG00000003345	polr1a	100	62.681	ENSECAG00000036306	-	100	64.901	Equus_caballus
ENSHCOG00000003345	polr1a	84	75.597	ENSEEUG00000000676	POLR1A	80	75.597	Erinaceus_europaeus
ENSHCOG00000003345	polr1a	100	69.555	ENSELUG00000012769	polr1a	99	69.860	Esox_lucius
ENSHCOG00000003345	polr1a	100	62.053	ENSFCAG00000008966	POLR1A	100	62.091	Felis_catus
ENSHCOG00000003345	polr1a	99	61.905	ENSFALG00000010082	POLR1A	99	61.905	Ficedula_albicollis
ENSHCOG00000003345	polr1a	100	61.756	ENSFDAG00000013726	POLR1A	100	62.029	Fukomys_damarensis
ENSHCOG00000003345	polr1a	100	71.275	ENSFHEG00000005996	polr1a	100	70.675	Fundulus_heteroclitus
ENSHCOG00000003345	polr1a	100	68.999	ENSGMOG00000002230	polr1a	100	69.018	Gadus_morhua
ENSHCOG00000003345	polr1a	97	54.015	ENSGALG00000038160	-	98	60.417	Gallus_gallus
ENSHCOG00000003345	polr1a	100	75.796	ENSGAFG00000015266	polr1a	100	75.916	Gambusia_affinis
ENSHCOG00000003345	polr1a	100	71.958	ENSGACG00000018791	polr1a	100	72.306	Gasterosteus_aculeatus
ENSHCOG00000003345	polr1a	91	64.314	ENSGAGG00000004984	-	99	64.656	Gopherus_agassizii
ENSHCOG00000003345	polr1a	82	51.131	ENSGAGG00000020105	-	79	51.131	Gopherus_agassizii
ENSHCOG00000003345	polr1a	100	62.717	ENSGGOG00000001788	POLR1A	100	62.760	Gorilla_gorilla
ENSHCOG00000003345	polr1a	89	78.159	ENSHBUG00000020021	polr1a	97	78.656	Haplochromis_burtoni
ENSHCOG00000003345	polr1a	100	62.226	ENSHGLG00000006334	POLR1A	100	62.449	Heterocephalus_glaber_female
ENSHCOG00000003345	polr1a	100	62.047	ENSHGLG00100006614	POLR1A	100	62.269	Heterocephalus_glaber_male
ENSHCOG00000003345	polr1a	100	67.233	ENSIPUG00000013174	polr1a	100	66.783	Ictalurus_punctatus
ENSHCOG00000003345	polr1a	99	60.957	ENSSTOG00000012580	POLR1A	99	61.946	Ictidomys_tridecemlineatus
ENSHCOG00000003345	polr1a	100	62.025	ENSJJAG00000013113	Polr1a	100	62.847	Jaculus_jaculus
ENSHCOG00000003345	polr1a	100	76.582	ENSKMAG00000007399	polr1a	100	76.345	Kryptolebias_marmoratus
ENSHCOG00000003345	polr1a	100	78.446	ENSLBEG00000015401	polr1a	100	78.385	Labrus_bergylta
ENSHCOG00000003345	polr1a	99	55.235	ENSLACG00000003218	polr1a	100	64.340	Latimeria_chalumnae
ENSHCOG00000003345	polr1a	100	67.266	ENSLOCG00000010881	polr1a	100	67.678	Lepisosteus_oculatus
ENSHCOG00000003345	polr1a	100	62.420	ENSLAFG00000014948	POLR1A	100	62.420	Loxodonta_africana
ENSHCOG00000003345	polr1a	100	62.139	ENSMFAG00000046097	POLR1A	100	62.061	Macaca_fascicularis
ENSHCOG00000003345	polr1a	100	62.182	ENSMMUG00000015815	POLR1A	100	62.003	Macaca_mulatta
ENSHCOG00000003345	polr1a	100	62.139	ENSMNEG00000043313	POLR1A	100	62.061	Macaca_nemestrina
ENSHCOG00000003345	polr1a	100	61.445	ENSMLEG00000042428	POLR1A	100	61.804	Mandrillus_leucophaeus
ENSHCOG00000003345	polr1a	100	77.712	ENSMAMG00000016565	polr1a	100	77.831	Mastacembelus_armatus
ENSHCOG00000003345	polr1a	100	76.900	ENSMZEG00005004915	polr1a	100	77.214	Maylandia_zebra
ENSHCOG00000003345	polr1a	99	59.734	ENSMGAG00000013111	POLR1A	99	59.781	Meleagris_gallopavo
ENSHCOG00000003345	polr1a	91	63.454	ENSMAUG00000008497	Polr1a	97	63.695	Mesocricetus_auratus
ENSHCOG00000003345	polr1a	100	61.984	ENSMICG00000000757	POLR1A	100	62.248	Microcebus_murinus
ENSHCOG00000003345	polr1a	100	62.384	ENSMOCG00000000122	Polr1a	100	62.637	Microtus_ochrogaster
ENSHCOG00000003345	polr1a	100	74.702	ENSMMOG00000010216	polr1a	100	74.702	Mola_mola
ENSHCOG00000003345	polr1a	96	63.510	ENSMODG00000009335	POLR1A	100	59.336	Monodelphis_domestica
ENSHCOG00000003345	polr1a	100	77.879	ENSMALG00000013363	polr1a	100	78.489	Monopterus_albus
ENSHCOG00000003345	polr1a	100	60.437	MGP_CAROLIEiJ_G0028494	Polr1a	100	61.645	Mus_caroli
ENSHCOG00000003345	polr1a	100	61.242	ENSMUSG00000049553	Polr1a	100	61.561	Mus_musculus
ENSHCOG00000003345	polr1a	100	61.694	MGP_PahariEiJ_G0022230	Polr1a	100	62.001	Mus_pahari
ENSHCOG00000003345	polr1a	100	60.295	MGP_SPRETEiJ_G0029499	Polr1a	100	60.761	Mus_spretus
ENSHCOG00000003345	polr1a	100	62.073	ENSMPUG00000009135	POLR1A	100	62.189	Mustela_putorius_furo
ENSHCOG00000003345	polr1a	100	62.406	ENSMLUG00000015723	POLR1A	100	62.299	Myotis_lucifugus
ENSHCOG00000003345	polr1a	100	62.428	ENSNGAG00000017907	Polr1a	100	62.681	Nannospalax_galili
ENSHCOG00000003345	polr1a	100	76.255	ENSNBRG00000000519	polr1a	100	76.860	Neolamprologus_brichardi
ENSHCOG00000003345	polr1a	100	60.550	ENSNLEG00000002264	POLR1A	100	60.505	Nomascus_leucogenys
ENSHCOG00000003345	polr1a	79	83.465	ENSMEUG00000011665	-	79	83.465	Notamacropus_eugenii
ENSHCOG00000003345	polr1a	95	68.085	ENSOPRG00000008269	POLR1A	94	68.085	Ochotona_princeps
ENSHCOG00000003345	polr1a	100	62.133	ENSODEG00000003542	POLR1A	100	62.500	Octodon_degus
ENSHCOG00000003345	polr1a	100	76.436	ENSONIG00000015895	polr1a	100	76.761	Oreochromis_niloticus
ENSHCOG00000003345	polr1a	90	53.668	ENSOANG00000012384	-	85	64.414	Ornithorhynchus_anatinus
ENSHCOG00000003345	polr1a	100	62.877	ENSOCUG00000010138	POLR1A	100	62.877	Oryctolagus_cuniculus
ENSHCOG00000003345	polr1a	100	74.765	ENSORLG00000008753	polr1a	99	75.000	Oryzias_latipes
ENSHCOG00000003345	polr1a	100	75.090	ENSORLG00020020726	polr1a	99	75.090	Oryzias_latipes_hni
ENSHCOG00000003345	polr1a	100	74.239	ENSORLG00015016071	polr1a	99	74.178	Oryzias_latipes_hsok
ENSHCOG00000003345	polr1a	85	71.366	ENSOMEG00000019264	-	79	71.366	Oryzias_melastigma
ENSHCOG00000003345	polr1a	100	61.918	ENSOGAG00000004031	POLR1A	100	62.312	Otolemur_garnettii
ENSHCOG00000003345	polr1a	100	62.788	ENSOARG00000020601	POLR1A	100	62.723	Ovis_aries
ENSHCOG00000003345	polr1a	100	62.601	ENSPPAG00000042450	POLR1A	100	62.644	Pan_paniscus
ENSHCOG00000003345	polr1a	100	62.226	ENSPPRG00000006702	POLR1A	100	62.227	Panthera_pardus
ENSHCOG00000003345	polr1a	100	61.839	ENSPTIG00000018783	POLR1A	100	61.842	Panthera_tigris_altaica
ENSHCOG00000003345	polr1a	100	62.486	ENSPTRG00000012147	POLR1A	100	62.644	Pan_troglodytes
ENSHCOG00000003345	polr1a	100	62.023	ENSPANG00000025908	POLR1A	100	62.097	Papio_anubis
ENSHCOG00000003345	polr1a	100	70.671	ENSPKIG00000005468	polr1a	100	70.732	Paramormyrops_kingsleyae
ENSHCOG00000003345	polr1a	66	64.077	ENSPSIG00000009321	-	99	65.121	Pelodiscus_sinensis
ENSHCOG00000003345	polr1a	89	60.251	ENSPMGG00000009718	polr1a	95	77.703	Periophthalmus_magnuspinnatus
ENSHCOG00000003345	polr1a	100	62.081	ENSPEMG00000022224	Polr1a	100	62.211	Peromyscus_maniculatus_bairdii
ENSHCOG00000003345	polr1a	95	61.707	ENSPCIG00000004222	POLR1A	99	61.844	Phascolarctos_cinereus
ENSHCOG00000003345	polr1a	100	74.205	ENSPFOG00000005025	polr1a	100	74.499	Poecilia_formosa
ENSHCOG00000003345	polr1a	100	74.439	ENSPLAG00000021389	polr1a	100	74.749	Poecilia_latipinna
ENSHCOG00000003345	polr1a	100	74.408	ENSPMEG00000006463	polr1a	100	74.719	Poecilia_mexicana
ENSHCOG00000003345	polr1a	100	74.606	ENSPREG00000002389	polr1a	100	74.368	Poecilia_reticulata
ENSHCOG00000003345	polr1a	100	61.521	ENSPPYG00000012217	POLR1A	100	61.591	Pongo_abelii
ENSHCOG00000003345	polr1a	86	76.224	ENSPCAG00000011582	POLR1A	89	58.103	Procavia_capensis
ENSHCOG00000003345	polr1a	100	62.291	ENSPCOG00000026987	POLR1A	100	62.608	Propithecus_coquereli
ENSHCOG00000003345	polr1a	93	64.770	ENSPVAG00000012674	POLR1A	91	64.839	Pteropus_vampyrus
ENSHCOG00000003345	polr1a	100	76.841	ENSPNYG00000000026	polr1a	100	77.155	Pundamilia_nyererei
ENSHCOG00000003345	polr1a	100	70.751	ENSPNAG00000019223	polr1a	100	70.323	Pygocentrus_nattereri
ENSHCOG00000003345	polr1a	100	60.784	ENSRNOG00000009545	Polr1a	100	60.902	Rattus_norvegicus
ENSHCOG00000003345	polr1a	100	61.965	ENSRBIG00000028335	POLR1A	100	62.197	Rhinopithecus_bieti
ENSHCOG00000003345	polr1a	100	61.965	ENSRROG00000031473	POLR1A	100	62.197	Rhinopithecus_roxellana
ENSHCOG00000003345	polr1a	94	42.958	YOR341W	RPA190	86	42.958	Saccharomyces_cerevisiae
ENSHCOG00000003345	polr1a	100	61.503	ENSSBOG00000030262	POLR1A	100	61.968	Saimiri_boliviensis_boliviensis
ENSHCOG00000003345	polr1a	100	57.994	ENSSHAG00000014739	POLR1A	100	58.252	Sarcophilus_harrisii
ENSHCOG00000003345	polr1a	100	67.974	ENSSFOG00015019716	polr1a	100	68.012	Scleropages_formosus
ENSHCOG00000003345	polr1a	100	78.851	ENSSMAG00000014342	polr1a	100	78.864	Scophthalmus_maximus
ENSHCOG00000003345	polr1a	100	77.431	ENSSDUG00000014631	polr1a	100	77.725	Seriola_dumerili
ENSHCOG00000003345	polr1a	100	79.252	ENSSLDG00000024095	polr1a	100	79.373	Seriola_lalandi_dorsalis
ENSHCOG00000003345	polr1a	69	95.122	ENSSARG00000003136	-	71	95.122	Sorex_araneus
ENSHCOG00000003345	polr1a	92	71.282	ENSSPUG00000004215	POLR1A	98	71.282	Sphenodon_punctatus
ENSHCOG00000003345	polr1a	99	62.406	ENSSPAG00000016341	polr1a	99	77.502	Stegastes_partitus
ENSHCOG00000003345	polr1a	99	54.909	ENSSSCG00000008226	POLR1A	99	63.257	Sus_scrofa
ENSHCOG00000003345	polr1a	99	61.475	ENSTGUG00000010704	POLR1A	100	61.279	Taeniopygia_guttata
ENSHCOG00000003345	polr1a	100	71.454	ENSTRUG00000002210	polr1a	99	71.724	Takifugu_rubripes
ENSHCOG00000003345	polr1a	99	68.327	ENSTNIG00000010116	polr1a	100	65.991	Tetraodon_nigroviridis
ENSHCOG00000003345	polr1a	99	55.678	ENSTBEG00000008646	POLR1A	69	81.416	Tupaia_belangeri
ENSHCOG00000003345	polr1a	100	60.335	ENSTTRG00000008597	POLR1A	100	60.012	Tursiops_truncatus
ENSHCOG00000003345	polr1a	99	51.625	ENSUAMG00000000099	-	98	51.625	Ursus_americanus
ENSHCOG00000003345	polr1a	72	66.079	ENSUAMG00000012158	-	94	66.082	Ursus_americanus
ENSHCOG00000003345	polr1a	100	63.539	ENSUMAG00000006700	POLR1A	100	63.490	Ursus_maritimus
ENSHCOG00000003345	polr1a	100	61.658	ENSVVUG00000001245	POLR1A	100	62.133	Vulpes_vulpes
ENSHCOG00000003345	polr1a	100	59.632	ENSXETG00000001952	polr1a	100	60.336	Xenopus_tropicalis
ENSHCOG00000003345	polr1a	55	69.595	ENSXCOG00000013384	polr1a	92	74.221	Xiphophorus_couchianus
ENSHCOG00000003345	polr1a	100	74.205	ENSXMAG00000004032	polr1a	100	74.456	Xiphophorus_maculatus