EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000003617 (Gene tree)
Gene ID: 109523822
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4860 bases
Position: chrKV880213.1:588584-593443
Accession: 109523822
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018797	zf-C2H2	PF00096.26	9.3e-19	1	3
ENSHCOP00000018797	zf-C2H2	PF00096.26	9.3e-19	2	3
ENSHCOP00000018797	zf-C2H2	PF00096.26	9.3e-19	3	3
ENSHCOP00000018797	zf-met	PF12874.7	1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010353	-	2948	XM_019883222	ENSHCOP00000018797	618 (aa)	XP_019738781	-

Gene Model

Click here to download ENSHCOG00000003617's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003617's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003617	prdm1b	67	71.292	ENSAPOG00000022084	prdm1b	89	71.838	Acanthochromis_polyacanthus
ENSHCOG00000003617	prdm1b	96	70.549	ENSACIG00000014426	prdm1b	97	70.549	Amphilophus_citrinellus
ENSHCOG00000003617	prdm1b	95	71.429	ENSAOCG00000002230	prdm1b	99	71.429	Amphiprion_ocellaris
ENSHCOG00000003617	prdm1b	100	71.036	ENSAPEG00000019826	prdm1b	100	71.036	Amphiprion_percula
ENSHCOG00000003617	prdm1b	100	75.439	ENSATEG00000006924	prdm1b	100	76.236	Anabas_testudineus
ENSHCOG00000003617	prdm1b	67	61.972	ENSATEG00000021017	prdm1a	56	61.972	Anabas_testudineus
ENSHCOG00000003617	prdm1b	93	73.459	ENSACLG00000005487	prdm1b	90	73.459	Astatotilapia_calliptera
ENSHCOG00000003617	prdm1b	63	60.563	ENSCSEG00000009707	prdm1a	61	60.563	Cynoglossus_semilaevis
ENSHCOG00000003617	prdm1b	99	70.673	ENSCVAG00000016746	prdm1b	99	70.192	Cyprinodon_variegatus
ENSHCOG00000003617	prdm1b	100	71.890	ENSFHEG00000019848	prdm1b	100	71.890	Fundulus_heteroclitus
ENSHCOG00000003617	prdm1b	97	70.550	ENSGAFG00000016191	prdm1b	97	70.874	Gambusia_affinis
ENSHCOG00000003617	prdm1b	91	66.340	ENSGACG00000002716	prdm1b	86	66.993	Gasterosteus_aculeatus
ENSHCOG00000003617	prdm1b	93	73.838	ENSHBUG00000001475	prdm1b	95	73.838	Haplochromis_burtoni
ENSHCOG00000003617	prdm1b	93	76.316	ENSIPUG00000013740	prdm1b	73	76.316	Ictalurus_punctatus
ENSHCOG00000003617	prdm1b	92	67.073	ENSKMAG00000011218	prdm1b	91	67.073	Kryptolebias_marmoratus
ENSHCOG00000003617	prdm1b	100	75.277	ENSLBEG00000020955	prdm1b	100	75.277	Labrus_bergylta
ENSHCOG00000003617	prdm1b	98	51.786	ENSLOCG00000004978	prdm1b	85	49.120	Lepisosteus_oculatus
ENSHCOG00000003617	prdm1b	100	71.520	ENSMZEG00005026361	prdm1b	95	71.520	Maylandia_zebra
ENSHCOG00000003617	prdm1b	95	73.818	ENSMMOG00000013458	prdm1b	97	73.818	Mola_mola
ENSHCOG00000003617	prdm1b	97	72.112	ENSMALG00000011410	prdm1b	99	72.277	Monopterus_albus
ENSHCOG00000003617	prdm1b	90	59.306	ENSONIG00000013583	prdm1b	86	59.464	Oreochromis_niloticus
ENSHCOG00000003617	prdm1b	99	65.463	ENSORLG00000010025	prdm1b	99	65.463	Oryzias_latipes
ENSHCOG00000003617	prdm1b	91	66.837	ENSORLG00015009022	prdm1b	92	67.007	Oryzias_latipes_hsok
ENSHCOG00000003617	prdm1b	98	47.308	ENSPKIG00000022335	prdm1b	81	47.961	Paramormyrops_kingsleyae
ENSHCOG00000003617	prdm1b	86	65.295	ENSPFOG00000003103	prdm1b	85	65.295	Poecilia_formosa
ENSHCOG00000003617	prdm1b	99	71.880	ENSPLAG00000018491	prdm1b	99	71.880	Poecilia_latipinna
ENSHCOG00000003617	prdm1b	100	72.930	ENSPMEG00000007869	prdm1b	100	72.930	Poecilia_mexicana
ENSHCOG00000003617	prdm1b	99	71.451	ENSPREG00000011327	prdm1b	99	71.451	Poecilia_reticulata
ENSHCOG00000003617	prdm1b	67	66.197	ENSPVAG00000011732	PRDM1	57	66.197	Pteropus_vampyrus
ENSHCOG00000003617	prdm1b	89	43.493	ENSPNAG00000028442	prdm1a	75	43.493	Pygocentrus_nattereri
ENSHCOG00000003617	prdm1b	90	58.813	ENSSFOG00015021896	prdm1b	77	58.813	Scleropages_formosus
ENSHCOG00000003617	prdm1b	100	75.040	ENSSMAG00000020467	prdm1b	100	75.041	Scophthalmus_maximus
ENSHCOG00000003617	prdm1b	100	76.789	ENSSDUG00000020610	prdm1b	100	76.789	Seriola_dumerili
ENSHCOG00000003617	prdm1b	99	76.518	ENSSLDG00000021973	prdm1b	99	75.941	Seriola_lalandi_dorsalis
ENSHCOG00000003617	prdm1b	100	73.558	ENSSPAG00000000803	prdm1b	100	74.116	Stegastes_partitus
ENSHCOG00000003617	prdm1b	95	72.466	ENSXCOG00000018920	prdm1b	84	72.466	Xiphophorus_couchianus
ENSHCOG00000003617	prdm1b	99	65.994	ENSXMAG00000016765	prdm1b	95	70.769	Xiphophorus_maculatus