EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003663 (Gene tree)
Gene ID: 109520407
Gene Symbol: prdm12b
Alias: zgc:101606
Full Name: PR/SET domain 12
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 5272 bases
Position: chrKV880088.1:196405-201676
Accession: 109520407
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000018819	zf-C2H2	PF00096.26	1.3e-10	1	2
ENSHCOP00000018819	zf-C2H2	PF00096.26	1.3e-10	2	2
ENSHCOP00000018819	zf-met	PF12874.7	7.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000010292	-	2346	XM_019877603	ENSHCOP00000018819	392 (aa)	XP_019733162	UPI00094ED0D3

Gene Model

Click here to download ENSHCOG00000003663's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003663's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003663	prdm12b	65	40.244	ENSHCOG00000012131	prdm5	91	42.105
ENSHCOG00000003663	prdm12b	100	69.424	ENSHCOG00000021167	-	93	74.640

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003663	prdm12b	89	79.083	ENSG00000130711	PRDM12	88	80.702	Homo_sapiens
ENSHCOG00000003663	prdm12b	100	80.750	ENSAPOG00000016051	prdm12b	90	87.429	Acanthochromis_polyacanthus
ENSHCOG00000003663	prdm12b	100	62.755	ENSAPOG00000018234	-	92	68.129	Acanthochromis_polyacanthus
ENSHCOG00000003663	prdm12b	87	78.947	ENSAMEG00000016234	PRDM12	99	78.592	Ailuropoda_melanoleuca
ENSHCOG00000003663	prdm12b	100	80.253	ENSACIG00000019578	prdm12b	90	87.826	Amphilophus_citrinellus
ENSHCOG00000003663	prdm12b	100	72.593	ENSACIG00000005193	-	91	80.226	Amphilophus_citrinellus
ENSHCOG00000003663	prdm12b	100	80.303	ENSAOCG00000015040	prdm12b	90	87.246	Amphiprion_ocellaris
ENSHCOG00000003663	prdm12b	100	70.297	ENSAPEG00000022849	-	86	76.420	Amphiprion_percula
ENSHCOG00000003663	prdm12b	100	80.253	ENSAPEG00000015092	prdm12b	90	87.536	Amphiprion_percula
ENSHCOG00000003663	prdm12b	100	75.190	ENSATEG00000014595	-	96	80.645	Anabas_testudineus
ENSHCOG00000003663	prdm12b	93	77.686	ENSANAG00000020616	PRDM12	95	80.702	Aotus_nancymaae
ENSHCOG00000003663	prdm12b	100	72.304	ENSACLG00000007631	-	87	79.830	Astatotilapia_calliptera
ENSHCOG00000003663	prdm12b	100	78.987	ENSACLG00000011876	prdm12b	90	84.058	Astatotilapia_calliptera
ENSHCOG00000003663	prdm12b	100	75.510	ENSAMXG00000033665	prdm12b	89	82.749	Astyanax_mexicanus
ENSHCOG00000003663	prdm12b	100	75.888	ENSAMXG00000008540	PRDM12	90	81.579	Astyanax_mexicanus
ENSHCOG00000003663	prdm12b	89	79.656	ENSBTAG00000023797	PRDM12	90	80.994	Bos_taurus
ENSHCOG00000003663	prdm12b	89	79.370	ENSCJAG00000020540	PRDM12	90	80.702	Callithrix_jacchus
ENSHCOG00000003663	prdm12b	77	80.795	ENSCAFG00000023076	PRDM12	87	81.695	Canis_familiaris
ENSHCOG00000003663	prdm12b	89	80.516	ENSCAFG00020024046	PRDM12	89	81.287	Canis_lupus_dingo
ENSHCOG00000003663	prdm12b	89	80.516	ENSCHIG00000025005	PRDM12	90	81.287	Capra_hircus
ENSHCOG00000003663	prdm12b	84	80.000	ENSCPOG00000005901	PRDM12	95	80.000	Cavia_porcellus
ENSHCOG00000003663	prdm12b	89	79.370	ENSCCAG00000037485	PRDM12	89	80.702	Cebus_capucinus
ENSHCOG00000003663	prdm12b	89	79.370	ENSCATG00000020327	PRDM12	89	80.702	Cercocebus_atys
ENSHCOG00000003663	prdm12b	88	80.347	ENSCLAG00000005499	PRDM12	89	80.702	Chinchilla_lanigera
ENSHCOG00000003663	prdm12b	89	79.370	ENSCSAG00000014756	PRDM12	89	80.702	Chlorocebus_sabaeus
ENSHCOG00000003663	prdm12b	100	73.469	ENSCPBG00000022628	PRDM12	92	79.825	Chrysemys_picta_bellii
ENSHCOG00000003663	prdm12b	89	79.656	ENSCGRG00001015005	Prdm12	89	80.994	Cricetulus_griseus_chok1gshd
ENSHCOG00000003663	prdm12b	100	79.337	ENSCVAG00000017166	prdm12b	90	85.965	Cyprinodon_variegatus
ENSHCOG00000003663	prdm12b	100	74.436	ENSCVAG00000000944	-	89	80.802	Cyprinodon_variegatus
ENSHCOG00000003663	prdm12b	100	77.551	ENSDARG00000007430	prdm12b	90	82.749	Danio_rerio
ENSHCOG00000003663	prdm12b	89	79.143	ENSDNOG00000042302	PRDM12	90	80.466	Dasypus_novemcinctus
ENSHCOG00000003663	prdm12b	83	65.282	ENSEBUG00000016780	prdm12b	73	65.964	Eptatretus_burgeri
ENSHCOG00000003663	prdm12b	93	78.512	ENSEASG00005008472	PRDM12	90	81.287	Equus_asinus_asinus
ENSHCOG00000003663	prdm12b	93	78.237	ENSECAG00000005933	PRDM12	90	81.287	Equus_caballus
ENSHCOG00000003663	prdm12b	100	77.041	ENSELUG00000009905	prdm12b	89	82.749	Esox_lucius
ENSHCOG00000003663	prdm12b	100	76.904	ENSELUG00000013674	PRDM12	90	84.593	Esox_lucius
ENSHCOG00000003663	prdm12b	89	80.516	ENSFCAG00000043086	PRDM12	89	81.287	Felis_catus
ENSHCOG00000003663	prdm12b	100	74.235	ENSFALG00000001445	PRDM12	82	80.702	Ficedula_albicollis
ENSHCOG00000003663	prdm12b	100	71.253	ENSFHEG00000007746	-	88	77.247	Fundulus_heteroclitus
ENSHCOG00000003663	prdm12b	100	79.293	ENSFHEG00000003944	prdm12b	90	85.549	Fundulus_heteroclitus
ENSHCOG00000003663	prdm12b	87	85.088	ENSGMOG00000011797	prdm12b	92	85.088	Gadus_morhua
ENSHCOG00000003663	prdm12b	100	74.235	ENSGALG00000003895	PRDM12	91	80.702	Gallus_gallus
ENSHCOG00000003663	prdm12b	100	80.253	ENSGAFG00000010827	prdm12b	88	85.423	Gambusia_affinis
ENSHCOG00000003663	prdm12b	100	81.980	ENSGACG00000016713	prdm12b	89	87.135	Gasterosteus_aculeatus
ENSHCOG00000003663	prdm12b	100	73.469	ENSGAGG00000014083	PRDM12	92	80.117	Gopherus_agassizii
ENSHCOG00000003663	prdm12b	89	78.797	ENSGGOG00000010568	PRDM12	89	80.409	Gorilla_gorilla
ENSHCOG00000003663	prdm12b	100	71.040	ENSHBUG00000022537	-	80	79.830	Haplochromis_burtoni
ENSHCOG00000003663	prdm12b	100	80.759	ENSHBUG00000022878	prdm12b	90	85.797	Haplochromis_burtoni
ENSHCOG00000003663	prdm12b	88	80.058	ENSHGLG00000013939	PRDM12	89	80.409	Heterocephalus_glaber_female
ENSHCOG00000003663	prdm12b	100	77.551	ENSIPUG00000017053	prdm12b	90	84.211	Ictalurus_punctatus
ENSHCOG00000003663	prdm12b	100	73.980	ENSIPUG00000019544	PRDM12	90	79.532	Ictalurus_punctatus
ENSHCOG00000003663	prdm12b	93	78.415	ENSSTOG00000005986	PRDM12	85	81.287	Ictidomys_tridecemlineatus
ENSHCOG00000003663	prdm12b	88	80.636	ENSJJAG00000005424	Prdm12	98	80.994	Jaculus_jaculus
ENSHCOG00000003663	prdm12b	100	76.316	ENSKMAG00000016921	prdm12b	87	83.240	Kryptolebias_marmoratus
ENSHCOG00000003663	prdm12b	99	70.992	ENSKMAG00000021205	-	92	78.134	Kryptolebias_marmoratus
ENSHCOG00000003663	prdm12b	100	82.398	ENSLBEG00000017769	prdm12b	88	88.596	Labrus_bergylta
ENSHCOG00000003663	prdm12b	100	73.737	ENSLBEG00000007776	-	89	80.758	Labrus_bergylta
ENSHCOG00000003663	prdm12b	100	74.235	ENSLACG00000017560	PRDM12	92	80.409	Latimeria_chalumnae
ENSHCOG00000003663	prdm12b	100	75.063	ENSLOCG00000005429	prdm12b	90	82.370	Lepisosteus_oculatus
ENSHCOG00000003663	prdm12b	89	79.603	ENSLAFG00000006979	PRDM12	88	80.347	Loxodonta_africana
ENSHCOG00000003663	prdm12b	89	79.370	ENSMFAG00000040322	PRDM12	88	80.702	Macaca_fascicularis
ENSHCOG00000003663	prdm12b	89	79.370	ENSMNEG00000037234	PRDM12	89	80.702	Macaca_nemestrina
ENSHCOG00000003663	prdm12b	100	81.888	ENSMAMG00000013212	prdm12b	90	89.766	Mastacembelus_armatus
ENSHCOG00000003663	prdm12b	100	69.287	ENSMAMG00000018988	-	86	76.487	Mastacembelus_armatus
ENSHCOG00000003663	prdm12b	100	71.921	ENSMZEG00005000415	PRDM12	86	79.830	Maylandia_zebra
ENSHCOG00000003663	prdm12b	94	77.384	ENSMGAG00000005438	PRDM12	91	80.702	Meleagris_gallopavo
ENSHCOG00000003663	prdm12b	100	73.980	ENSMAUG00000013040	Prdm12	89	80.994	Mesocricetus_auratus
ENSHCOG00000003663	prdm12b	92	78.947	ENSMICG00000015480	PRDM12	90	81.287	Microcebus_murinus
ENSHCOG00000003663	prdm12b	99	75.194	ENSMOCG00000021026	Prdm12	89	81.287	Microtus_ochrogaster
ENSHCOG00000003663	prdm12b	100	73.537	ENSMODG00000012108	PRDM12	91	80.117	Monodelphis_domestica
ENSHCOG00000003663	prdm12b	100	70.558	ENSMALG00000021901	prdm12b	88	73.392	Monopterus_albus
ENSHCOG00000003663	prdm12b	89	79.370	MGP_CAROLIEiJ_G0023414	Prdm12	89	80.994	Mus_caroli
ENSHCOG00000003663	prdm12b	89	79.370	ENSMUSG00000079466	Prdm12	89	80.994	Mus_musculus
ENSHCOG00000003663	prdm12b	89	79.370	MGP_PahariEiJ_G0024871	Prdm12	89	80.994	Mus_pahari
ENSHCOG00000003663	prdm12b	89	79.370	MGP_SPRETEiJ_G0024331	Prdm12	89	80.994	Mus_spretus
ENSHCOG00000003663	prdm12b	87	80.117	ENSNGAG00000018480	Prdm12	92	80.702	Nannospalax_galili
ENSHCOG00000003663	prdm12b	100	80.101	ENSNBRG00000006727	prdm12b	90	85.879	Neolamprologus_brichardi
ENSHCOG00000003663	prdm12b	100	66.418	ENSNBRG00000024312	-	93	72.727	Neolamprologus_brichardi
ENSHCOG00000003663	prdm12b	100	65.903	ENSMEUG00000003828	PRDM12	78	96.552	Notamacropus_eugenii
ENSHCOG00000003663	prdm12b	88	81.214	ENSOPRG00000008680	PRDM12	98	81.579	Ochotona_princeps
ENSHCOG00000003663	prdm12b	93	78.237	ENSODEG00000016282	PRDM12	61	80.702	Octodon_degus
ENSHCOG00000003663	prdm12b	65	70.751	ENSOANG00000001043	PRDM12	87	80.788	Ornithorhynchus_anatinus
ENSHCOG00000003663	prdm12b	81	80.063	ENSOCUG00000008241	PRDM12	96	80.063	Oryctolagus_cuniculus
ENSHCOG00000003663	prdm12b	100	81.818	ENSORLG00000007114	prdm12b	90	88.439	Oryzias_latipes
ENSHCOG00000003663	prdm12b	100	74.372	ENSORLG00000017558	-	87	82.029	Oryzias_latipes
ENSHCOG00000003663	prdm12b	100	81.061	ENSORLG00020019565	prdm12b	90	88.439	Oryzias_latipes_hni
ENSHCOG00000003663	prdm12b	100	74.372	ENSORLG00020013167	-	87	82.029	Oryzias_latipes_hni
ENSHCOG00000003663	prdm12b	100	80.303	ENSORLG00015007621	prdm12b	90	87.861	Oryzias_latipes_hsok
ENSHCOG00000003663	prdm12b	100	74.372	ENSORLG00015003435	-	87	82.029	Oryzias_latipes_hsok
ENSHCOG00000003663	prdm12b	100	73.500	ENSOMEG00000007762	-	93	80.286	Oryzias_melastigma
ENSHCOG00000003663	prdm12b	100	81.955	ENSOMEG00000004134	prdm12b	90	88.252	Oryzias_melastigma
ENSHCOG00000003663	prdm12b	89	80.516	ENSOGAG00000007557	PRDM12	97	81.287	Otolemur_garnettii
ENSHCOG00000003663	prdm12b	78	77.632	ENSPPAG00000031506	-	99	77.097	Pan_paniscus
ENSHCOG00000003663	prdm12b	100	69.543	ENSPPRG00000023024	PRDM12	83	74.927	Panthera_pardus
ENSHCOG00000003663	prdm12b	89	79.083	ENSPTRG00000021475	PRDM12	89	80.702	Pan_troglodytes
ENSHCOG00000003663	prdm12b	89	79.083	ENSPTRG00000043324	-	89	80.702	Pan_troglodytes
ENSHCOG00000003663	prdm12b	89	79.370	ENSPANG00000025967	PRDM12	89	80.702	Papio_anubis
ENSHCOG00000003663	prdm12b	87	77.193	ENSPKIG00000004305	PRDM12	94	77.193	Paramormyrops_kingsleyae
ENSHCOG00000003663	prdm12b	100	76.786	ENSPKIG00000007228	prdm12b	90	83.918	Paramormyrops_kingsleyae
ENSHCOG00000003663	prdm12b	100	73.980	ENSPSIG00000006739	PRDM12	92	80.702	Pelodiscus_sinensis
ENSHCOG00000003663	prdm12b	100	71.111	ENSPMGG00000002356	-	86	79.191	Periophthalmus_magnuspinnatus
ENSHCOG00000003663	prdm12b	100	78.934	ENSPMGG00000008867	prdm12b	89	85.756	Periophthalmus_magnuspinnatus
ENSHCOG00000003663	prdm12b	93	77.260	ENSPEMG00000009969	Prdm12	89	80.994	Peromyscus_maniculatus_bairdii
ENSHCOG00000003663	prdm12b	100	73.537	ENSPCIG00000024119	PRDM12	91	80.117	Phascolarctos_cinereus
ENSHCOG00000003663	prdm12b	100	81.612	ENSPFOG00000019841	prdm12b	91	86.377	Poecilia_formosa
ENSHCOG00000003663	prdm12b	100	79.747	ENSPLAG00000016626	prdm12b	88	85.714	Poecilia_latipinna
ENSHCOG00000003663	prdm12b	96	81.365	ENSPMEG00000016698	prdm12b	86	85.714	Poecilia_mexicana
ENSHCOG00000003663	prdm12b	97	68.462	ENSPREG00000003211	-	83	78.549	Poecilia_reticulata
ENSHCOG00000003663	prdm12b	100	80.000	ENSPREG00000015073	prdm12b	87	85.714	Poecilia_reticulata
ENSHCOG00000003663	prdm12b	89	79.083	ENSPPYG00000019694	PRDM12	92	80.702	Pongo_abelii
ENSHCOG00000003663	prdm12b	89	80.516	ENSPCOG00000022255	PRDM12	89	81.287	Propithecus_coquereli
ENSHCOG00000003663	prdm12b	89	80.516	ENSPVAG00000001511	PRDM12	89	81.287	Pteropus_vampyrus
ENSHCOG00000003663	prdm12b	100	81.061	ENSPNYG00000009607	prdm12b	90	86.087	Pundamilia_nyererei
ENSHCOG00000003663	prdm12b	100	71.921	ENSPNYG00000013589	-	86	79.830	Pundamilia_nyererei
ENSHCOG00000003663	prdm12b	100	73.116	ENSPNAG00000013396	PRDM12	88	79.310	Pygocentrus_nattereri
ENSHCOG00000003663	prdm12b	100	75.765	ENSPNAG00000024532	prdm12b	90	83.041	Pygocentrus_nattereri
ENSHCOG00000003663	prdm12b	89	79.370	ENSRNOG00000009218	Prdm12	89	80.994	Rattus_norvegicus
ENSHCOG00000003663	prdm12b	85	79.940	ENSRBIG00000042712	PRDM12	88	79.882	Rhinopithecus_bieti
ENSHCOG00000003663	prdm12b	86	80.178	ENSRROG00000043554	PRDM12	99	80.769	Rhinopithecus_roxellana
ENSHCOG00000003663	prdm12b	100	73.096	ENSSHAG00000015972	PRDM12	91	79.592	Sarcophilus_harrisii
ENSHCOG00000003663	prdm12b	100	79.851	ENSSMAG00000003754	prdm12b	89	86.932	Scophthalmus_maximus
ENSHCOG00000003663	prdm12b	100	75.381	ENSSDUG00000019071	-	89	82.267	Seriola_dumerili
ENSHCOG00000003663	prdm12b	100	80.798	ENSSDUG00000023498	prdm12b	90	87.896	Seriola_dumerili
ENSHCOG00000003663	prdm12b	100	72.194	ENSSLDG00000013562	-	93	79.532	Seriola_lalandi_dorsalis
ENSHCOG00000003663	prdm12b	100	82.915	ENSSLDG00000009557	prdm12b	90	89.080	Seriola_lalandi_dorsalis
ENSHCOG00000003663	prdm12b	100	74.046	ENSSPUG00000013424	PRDM12	92	80.409	Sphenodon_punctatus
ENSHCOG00000003663	prdm12b	100	67.176	ENSSPAG00000022420	-	87	70.468	Stegastes_partitus
ENSHCOG00000003663	prdm12b	100	79.093	ENSSPAG00000018824	prdm12b	90	88.150	Stegastes_partitus
ENSHCOG00000003663	prdm12b	89	80.516	ENSSSCG00000005703	PRDM12	89	81.287	Sus_scrofa
ENSHCOG00000003663	prdm12b	100	78.173	ENSTRUG00000018659	prdm12b	90	84.012	Takifugu_rubripes
ENSHCOG00000003663	prdm12b	100	72.081	ENSTRUG00000013239	-	93	78.198	Takifugu_rubripes
ENSHCOG00000003663	prdm12b	100	79.442	ENSTNIG00000009020	prdm12b	89	86.337	Tetraodon_nigroviridis
ENSHCOG00000003663	prdm12b	100	70.633	ENSTNIG00000005859	-	92	75.652	Tetraodon_nigroviridis
ENSHCOG00000003663	prdm12b	89	80.516	ENSUAMG00000009653	PRDM12	90	81.287	Ursus_americanus
ENSHCOG00000003663	prdm12b	89	80.516	ENSVVUG00000027662	PRDM12	77	81.287	Vulpes_vulpes
ENSHCOG00000003663	prdm12b	100	79.241	ENSXCOG00000002836	prdm12b	89	85.714	Xiphophorus_couchianus
ENSHCOG00000003663	prdm12b	100	73.284	ENSXMAG00000028012	-	88	79.213	Xiphophorus_maculatus
ENSHCOG00000003663	prdm12b	100	80.253	ENSXMAG00000005537	prdm12b	89	86.589	Xiphophorus_maculatus