EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000003895 (Gene tree)
Gene ID: 109529059
Gene Symbol: npm1b
Alias: npm4
Full Name: nucleophosmin-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 23442 bases
Position: chrKV880347.1:786095-809536
Accession: 109529059
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000002699	Nucleoplasmin	PF03066.15	6.2e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000009978	-	1830	XM_019892208	ENSHCOP00000002699	295 (aa)	XP_019747767	UPI00094F2A68

Gene Model

Click here to download ENSHCOG00000003895's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000003895's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000003895	npm1b	95	38.194	ENSHCOG00000001059	npm1a	94	40.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000003895	npm1b	100	77.000	ENSAPOG00000004268	npm1b	100	75.667	Acanthochromis_polyacanthus
ENSHCOG00000003895	npm1b	100	77.027	ENSAOCG00000012549	npm1b	100	77.027	Amphiprion_ocellaris
ENSHCOG00000003895	npm1b	100	77.365	ENSAPEG00000000868	npm1b	100	77.365	Amphiprion_percula
ENSHCOG00000003895	npm1b	100	75.667	ENSATEG00000006254	npm1b	100	75.667	Anabas_testudineus
ENSHCOG00000003895	npm1b	95	43.878	ENSACAG00000015626	-	96	44.369	Anolis_carolinensis
ENSHCOG00000003895	npm1b	98	60.201	ENSAMXG00000042148	npm1b	99	59.732	Astyanax_mexicanus
ENSHCOG00000003895	npm1b	85	34.733	ENSCAFG00000023359	-	99	33.462	Canis_familiaris
ENSHCOG00000003895	npm1b	96	44.932	ENSCPBG00000021221	-	58	45.392	Chrysemys_picta_bellii
ENSHCOG00000003895	npm1b	100	72.819	ENSCSEG00000004530	npm1b	100	72.819	Cynoglossus_semilaevis
ENSHCOG00000003895	npm1b	100	69.333	ENSCVAG00000013016	npm1b	100	70.333	Cyprinodon_variegatus
ENSHCOG00000003895	npm1b	99	63.245	ENSDARG00000037675	npm1b	99	63.245	Danio_rerio
ENSHCOG00000003895	npm1b	99	58.086	ENSELUG00000022123	npm1b	98	57.756	Esox_lucius
ENSHCOG00000003895	npm1b	94	44.014	ENSFALG00000003320	-	94	44.014	Ficedula_albicollis
ENSHCOG00000003895	npm1b	100	67.442	ENSFHEG00000020794	npm1b	100	67.442	Fundulus_heteroclitus
ENSHCOG00000003895	npm1b	98	61.017	ENSGMOG00000002689	npm1b	100	61.017	Gadus_morhua
ENSHCOG00000003895	npm1b	98	44.408	ENSGALG00000002197	-	73	44.408	Gallus_gallus
ENSHCOG00000003895	npm1b	100	68.000	ENSGAFG00000017709	npm1b	100	68.333	Gambusia_affinis
ENSHCOG00000003895	npm1b	98	74.914	ENSGACG00000016706	npm1b	100	74.227	Gasterosteus_aculeatus
ENSHCOG00000003895	npm1b	95	45.578	ENSGAGG00000020250	-	96	44.178	Gopherus_agassizii
ENSHCOG00000003895	npm1b	100	72.000	ENSHBUG00000019903	npm1b	95	73.000	Haplochromis_burtoni
ENSHCOG00000003895	npm1b	99	58.553	ENSIPUG00000020165	npm1b	99	54.902	Ictalurus_punctatus
ENSHCOG00000003895	npm1b	99	69.932	ENSKMAG00000008260	npm1b	99	70.270	Kryptolebias_marmoratus
ENSHCOG00000003895	npm1b	93	41.892	ENSLACG00000001779	-	100	43.509	Latimeria_chalumnae
ENSHCOG00000003895	npm1b	95	37.201	ENSLACG00000013460	-	98	37.755	Latimeria_chalumnae
ENSHCOG00000003895	npm1b	93	46.102	ENSLOCG00000001942	npm1b	99	46.102	Lepisosteus_oculatus
ENSHCOG00000003895	npm1b	72	70.320	ENSMAMG00000015335	npm1b	100	70.320	Mastacembelus_armatus
ENSHCOG00000003895	npm1b	93	44.170	ENSMGAG00000001591	-	100	44.523	Meleagris_gallopavo
ENSHCOG00000003895	npm1b	81	74.897	ENSMALG00000015383	npm1b	99	76.543	Monopterus_albus
ENSHCOG00000003895	npm1b	99	71.478	ENSONIG00000001397	npm1b	98	71.478	Oreochromis_niloticus
ENSHCOG00000003895	npm1b	99	63.051	ENSOMEG00000003414	npm1b	99	62.373	Oryzias_melastigma
ENSHCOG00000003895	npm1b	98	56.066	ENSPKIG00000020050	npm1b	98	56.066	Paramormyrops_kingsleyae
ENSHCOG00000003895	npm1b	96	44.710	ENSPSIG00000011204	-	92	42.215	Pelodiscus_sinensis
ENSHCOG00000003895	npm1b	93	37.193	ENSPMAG00000004930	npm1b	99	37.193	Petromyzon_marinus
ENSHCOG00000003895	npm1b	100	68.000	ENSPFOG00000018357	npm1b	100	68.000	Poecilia_formosa
ENSHCOG00000003895	npm1b	98	61.824	ENSPNAG00000005498	npm1b	99	58.644	Pygocentrus_nattereri
ENSHCOG00000003895	npm1b	99	55.593	ENSSFOG00015005064	npm1b	100	53.716	Scleropages_formosus
ENSHCOG00000003895	npm1b	100	73.986	ENSSMAG00000008088	npm1b	100	73.986	Scophthalmus_maximus
ENSHCOG00000003895	npm1b	100	78.667	ENSSDUG00000007726	npm1b	100	78.333	Seriola_dumerili
ENSHCOG00000003895	npm1b	100	79.000	ENSSLDG00000021396	npm1b	100	78.667	Seriola_lalandi_dorsalis
ENSHCOG00000003895	npm1b	100	76.667	ENSSPAG00000011152	npm1b	100	75.333	Stegastes_partitus
ENSHCOG00000003895	npm1b	93	42.657	ENSTGUG00000014970	-	100	43.357	Taeniopygia_guttata
ENSHCOG00000003895	npm1b	100	69.565	ENSTRUG00000008105	npm1b	95	69.565	Takifugu_rubripes
ENSHCOG00000003895	npm1b	99	67.559	ENSTNIG00000013057	npm1b	100	65.217	Tetraodon_nigroviridis
ENSHCOG00000003895	npm1b	96	42.268	ENSXETG00000008403	npm1	95	43.643	Xenopus_tropicalis
ENSHCOG00000003895	npm1b	100	67.667	ENSXMAG00000001986	npm1b	100	68.333	Xiphophorus_maculatus