EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000004025 (Gene tree)
Gene ID: 109532617
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 10709 bases
Position: chrKV880455.1:944409-955117
Accession: 109532617
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000002770	Upf2	PF04050.14	9.9e-33	1	1
ENSHCOP00000018978	Upf2	PF04050.14	1e-32	1	1
ENSHCOP00000018978	MIF4G	PF02854.19	5.5e-78	1	3
ENSHCOP00000018978	MIF4G	PF02854.19	5.5e-78	2	3
ENSHCOP00000018978	MIF4G	PF02854.19	5.5e-78	3	3
ENSHCOP00000002770	MIF4G	PF02854.19	5.8e-78	1	3
ENSHCOP00000002770	MIF4G	PF02854.19	5.8e-78	2	3
ENSHCOP00000002770	MIF4G	PF02854.19	5.8e-78	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000009883	UPF2-202	3849	-	ENSHCOP00000018978	1282 (aa)	-	-
ENSHCOT00000009866	UPF2-201	4890	XM_019897538	ENSHCOP00000002770	1292 (aa)	XP_019753097	-

Gene Model

Click here to download ENSHCOG00000004025's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004025's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000004025	UPF2	99	80.528	ENSG00000151461	UPF2	100	80.528	Homo_sapiens
ENSHCOG00000004025	UPF2	99	86.317	ENSAPOG00000015837	UPF2	100	85.927	Acanthochromis_polyacanthus
ENSHCOG00000004025	UPF2	99	80.808	ENSAMEG00000004586	UPF2	100	80.808	Ailuropoda_melanoleuca
ENSHCOG00000004025	UPF2	99	91.257	ENSACIG00000018078	UPF2	100	91.335	Amphilophus_citrinellus
ENSHCOG00000004025	UPF2	99	91.803	ENSAOCG00000016766	UPF2	100	91.803	Amphiprion_ocellaris
ENSHCOG00000004025	UPF2	99	91.881	ENSAPEG00000019084	UPF2	100	91.881	Amphiprion_percula
ENSHCOG00000004025	UPF2	99	91.044	ENSATEG00000021677	UPF2	99	91.121	Anabas_testudineus
ENSHCOG00000004025	UPF2	99	77.019	ENSAPLG00000010287	UPF2	90	81.952	Anas_platyrhynchos
ENSHCOG00000004025	UPF2	99	80.264	ENSACAG00000009259	UPF2	100	80.342	Anolis_carolinensis
ENSHCOG00000004025	UPF2	97	75.920	ENSANAG00000028451	UPF2	93	77.797	Aotus_nancymaae
ENSHCOG00000004025	UPF2	99	91.037	ENSACLG00000012696	UPF2	100	91.115	Astatotilapia_calliptera
ENSHCOG00000004025	UPF2	99	86.381	ENSAMXG00000013700	UPF2	99	86.693	Astyanax_mexicanus
ENSHCOG00000004025	UPF2	99	80.886	ENSBTAG00000000288	UPF2	100	80.886	Bos_taurus
ENSHCOG00000004025	UPF2	99	79.720	ENSCJAG00000020685	UPF2	100	79.720	Callithrix_jacchus
ENSHCOG00000004025	UPF2	99	80.963	ENSCAFG00000004839	UPF2	100	80.963	Canis_familiaris
ENSHCOG00000004025	UPF2	94	86.364	ENSCAFG00020005882	UPF2	98	81.213	Canis_lupus_dingo
ENSHCOG00000004025	UPF2	99	80.730	ENSCHIG00000020359	UPF2	100	80.730	Capra_hircus
ENSHCOG00000004025	UPF2	99	80.886	ENSTSYG00000000935	UPF2	97	85.955	Carlito_syrichta
ENSHCOG00000004025	UPF2	91	73.396	ENSCAPG00000016658	UPF2	95	73.532	Cavia_aperea
ENSHCOG00000004025	UPF2	91	81.779	ENSCPOG00000008809	UPF2	93	81.702	Cavia_porcellus
ENSHCOG00000004025	UPF2	99	73.582	ENSCCAG00000035991	UPF2	100	74.747	Cebus_capucinus
ENSHCOG00000004025	UPF2	99	80.590	ENSCATG00000032679	UPF2	100	80.590	Cercocebus_atys
ENSHCOG00000004025	UPF2	99	79.860	ENSCLAG00000011434	UPF2	100	79.876	Chinchilla_lanigera
ENSHCOG00000004025	UPF2	99	80.590	ENSCSAG00000013372	UPF2	100	80.590	Chlorocebus_sabaeus
ENSHCOG00000004025	UPF2	78	88.692	ENSCHOG00000000422	UPF2	81	87.361	Choloepus_hoffmanni
ENSHCOG00000004025	UPF2	99	79.267	ENSCPBG00000027823	UPF2	100	79.111	Chrysemys_picta_bellii
ENSHCOG00000004025	UPF2	78	48.137	ENSCSAVG00000007772	-	99	47.779	Ciona_savignyi
ENSHCOG00000004025	UPF2	99	75.386	ENSCANG00000040396	UPF2	100	75.758	Colobus_angolensis_palliatus
ENSHCOG00000004025	UPF2	99	80.342	ENSCGRG00001019347	Upf2	100	80.590	Cricetulus_griseus_chok1gshd
ENSHCOG00000004025	UPF2	99	80.342	ENSCGRG00000017993	Upf2	100	80.590	Cricetulus_griseus_crigri
ENSHCOG00000004025	UPF2	99	82.527	ENSCSEG00000003520	UPF2	99	82.889	Cynoglossus_semilaevis
ENSHCOG00000004025	UPF2	99	89.929	ENSCVAG00000006167	UPF2	100	90.094	Cyprinodon_variegatus
ENSHCOG00000004025	UPF2	99	80.963	ENSDNOG00000018160	UPF2	100	80.963	Dasypus_novemcinctus
ENSHCOG00000004025	UPF2	99	80.342	ENSDORG00000002478	Upf2	100	80.653	Dipodomys_ordii
ENSHCOG00000004025	UPF2	89	36.237	FBgn0029992	Upf2	73	39.130	Drosophila_melanogaster
ENSHCOG00000004025	UPF2	73	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSHCOG00000004025	UPF2	64	72.848	ENSEBUG00000012448	-	93	67.713	Eptatretus_burgeri
ENSHCOG00000004025	UPF2	99	80.171	ENSEASG00005019274	UPF2	100	79.705	Equus_asinus_asinus
ENSHCOG00000004025	UPF2	99	80.171	ENSECAG00000017022	UPF2	100	80.171	Equus_caballus
ENSHCOG00000004025	UPF2	81	75.796	ENSEEUG00000007819	UPF2	74	73.885	Erinaceus_europaeus
ENSHCOG00000004025	UPF2	99	88.318	ENSELUG00000012014	UPF2	100	88.162	Esox_lucius
ENSHCOG00000004025	UPF2	99	85.792	ENSFCAG00000005785	UPF2	100	80.808	Felis_catus
ENSHCOG00000004025	UPF2	99	81.352	ENSFALG00000001889	UPF2	98	81.119	Ficedula_albicollis
ENSHCOG00000004025	UPF2	99	79.160	ENSFDAG00000014348	UPF2	100	79.487	Fukomys_damarensis
ENSHCOG00000004025	UPF2	99	89.606	ENSFHEG00000009826	UPF2	100	89.851	Fundulus_heteroclitus
ENSHCOG00000004025	UPF2	90	86.713	ENSGMOG00000005557	UPF2	100	85.415	Gadus_morhua
ENSHCOG00000004025	UPF2	99	81.599	ENSGALG00000033772	UPF2	100	81.366	Gallus_gallus
ENSHCOG00000004025	UPF2	99	89.461	ENSGAFG00000020867	UPF2	100	89.461	Gambusia_affinis
ENSHCOG00000004025	UPF2	99	88.941	ENSGACG00000001080	UPF2	100	89.642	Gasterosteus_aculeatus
ENSHCOG00000004025	UPF2	99	79.891	ENSGAGG00000002700	UPF2	100	79.891	Gopherus_agassizii
ENSHCOG00000004025	UPF2	99	80.528	ENSGGOG00000001479	UPF2	100	80.528	Gorilla_gorilla
ENSHCOG00000004025	UPF2	99	91.023	ENSHBUG00000004249	UPF2	100	91.101	Haplochromis_burtoni
ENSHCOG00000004025	UPF2	99	79.705	ENSHGLG00000015176	-	100	79.720	Heterocephalus_glaber_female
ENSHCOG00000004025	UPF2	99	70.950	ENSHGLG00000003822	-	99	70.895	Heterocephalus_glaber_female
ENSHCOG00000004025	UPF2	99	77.336	ENSHGLG00100010036	UPF2	100	76.713	Heterocephalus_glaber_male
ENSHCOG00000004025	UPF2	99	85.303	ENSIPUG00000015524	UPF2	100	85.614	Ictalurus_punctatus
ENSHCOG00000004025	UPF2	99	80.342	ENSSTOG00000013075	UPF2	100	80.653	Ictidomys_tridecemlineatus
ENSHCOG00000004025	UPF2	99	77.838	ENSJJAG00000004913	Upf2	100	80.280	Jaculus_jaculus
ENSHCOG00000004025	UPF2	99	89.238	ENSKMAG00000001071	UPF2	100	89.474	Kryptolebias_marmoratus
ENSHCOG00000004025	UPF2	100	90.185	ENSLBEG00000016394	-	100	90.263	Labrus_bergylta
ENSHCOG00000004025	UPF2	80	88.402	ENSLBEG00000000728	-	94	88.608	Labrus_bergylta
ENSHCOG00000004025	UPF2	90	76.587	ENSLACG00000015945	UPF2	100	75.058	Latimeria_chalumnae
ENSHCOG00000004025	UPF2	99	84.863	ENSLOCG00000015698	UPF2	100	84.941	Lepisosteus_oculatus
ENSHCOG00000004025	UPF2	99	80.590	ENSMFAG00000043865	UPF2	100	80.590	Macaca_fascicularis
ENSHCOG00000004025	UPF2	99	80.590	ENSMMUG00000008241	UPF2	100	80.590	Macaca_mulatta
ENSHCOG00000004025	UPF2	80	80.407	ENSMNEG00000008062	UPF2	99	80.407	Macaca_nemestrina
ENSHCOG00000004025	UPF2	99	78.632	ENSMLEG00000036120	UPF2	100	81.384	Mandrillus_leucophaeus
ENSHCOG00000004025	UPF2	99	91.348	ENSMAMG00000018276	UPF2	100	91.504	Mastacembelus_armatus
ENSHCOG00000004025	UPF2	99	91.037	ENSMZEG00005021595	UPF2	100	91.115	Maylandia_zebra
ENSHCOG00000004025	UPF2	99	81.109	ENSMGAG00000004573	UPF2	99	80.874	Meleagris_gallopavo
ENSHCOG00000004025	UPF2	99	78.399	ENSMAUG00000016512	Upf2	100	78.649	Mesocricetus_auratus
ENSHCOG00000004025	UPF2	94	86.364	ENSMICG00000001716	UPF2	100	78.132	Microcebus_murinus
ENSHCOG00000004025	UPF2	99	79.782	ENSMOCG00000008263	Upf2	100	80.093	Microtus_ochrogaster
ENSHCOG00000004025	UPF2	99	87.382	ENSMMOG00000006528	UPF2	100	86.991	Mola_mola
ENSHCOG00000004025	UPF2	91	83.761	ENSMODG00000016794	UPF2	100	80.420	Monodelphis_domestica
ENSHCOG00000004025	UPF2	99	89.289	ENSMALG00000002663	UPF2	100	89.289	Monopterus_albus
ENSHCOG00000004025	UPF2	99	80.186	MGP_CAROLIEiJ_G0023157	Upf2	100	83.019	Mus_caroli
ENSHCOG00000004025	UPF2	99	80.575	ENSMUSG00000043241	Upf2	99	83.208	Mus_musculus
ENSHCOG00000004025	UPF2	99	80.575	MGP_PahariEiJ_G0019217	Upf2	100	83.019	Mus_pahari
ENSHCOG00000004025	UPF2	99	80.730	MGP_SPRETEiJ_G0024075	Upf2	100	83.208	Mus_spretus
ENSHCOG00000004025	UPF2	99	80.808	ENSMPUG00000001064	UPF2	100	80.808	Mustela_putorius_furo
ENSHCOG00000004025	UPF2	99	80.497	ENSMLUG00000000228	UPF2	100	80.838	Myotis_lucifugus
ENSHCOG00000004025	UPF2	99	91.037	ENSNBRG00000013629	UPF2	100	91.115	Neolamprologus_brichardi
ENSHCOG00000004025	UPF2	99	80.512	ENSNLEG00000012058	UPF2	100	80.512	Nomascus_leucogenys
ENSHCOG00000004025	UPF2	72	94.366	ENSOPRG00000006801	-	73	94.366	Ochotona_princeps
ENSHCOG00000004025	UPF2	99	79.860	ENSODEG00000001290	UPF2	100	79.860	Octodon_degus
ENSHCOG00000004025	UPF2	99	90.647	ENSONIG00000017991	UPF2	100	90.725	Oreochromis_niloticus
ENSHCOG00000004025	UPF2	99	78.450	ENSOCUG00000006230	UPF2	100	79.551	Oryctolagus_cuniculus
ENSHCOG00000004025	UPF2	99	89.392	ENSORLG00000017189	UPF2	100	90.094	Oryzias_latipes
ENSHCOG00000004025	UPF2	99	89.392	ENSORLG00020005969	UPF2	100	90.094	Oryzias_latipes_hni
ENSHCOG00000004025	UPF2	99	89.392	ENSORLG00015005713	UPF2	100	90.094	Oryzias_latipes_hsok
ENSHCOG00000004025	UPF2	99	86.630	ENSOMEG00000023420	UPF2	98	86.630	Oryzias_melastigma
ENSHCOG00000004025	UPF2	99	80.808	ENSOGAG00000005796	UPF2	100	80.653	Otolemur_garnettii
ENSHCOG00000004025	UPF2	99	80.605	ENSOARG00000014587	UPF2	100	80.605	Ovis_aries
ENSHCOG00000004025	UPF2	99	78.322	ENSPPAG00000037953	UPF2	100	78.011	Pan_paniscus
ENSHCOG00000004025	UPF2	99	80.808	ENSPPRG00000000690	UPF2	100	80.808	Panthera_pardus
ENSHCOG00000004025	UPF2	99	80.808	ENSPTIG00000008867	UPF2	100	80.808	Panthera_tigris_altaica
ENSHCOG00000004025	UPF2	99	80.528	ENSPTRG00000002291	UPF2	100	80.528	Pan_troglodytes
ENSHCOG00000004025	UPF2	99	80.512	ENSPANG00000023399	UPF2	100	80.512	Papio_anubis
ENSHCOG00000004025	UPF2	99	85.016	ENSPKIG00000025502	UPF2	100	84.992	Paramormyrops_kingsleyae
ENSHCOG00000004025	UPF2	59	78.796	ENSPSIG00000015158	UPF2	96	77.979	Pelodiscus_sinensis
ENSHCOG00000004025	UPF2	99	86.520	ENSPMGG00000005259	UPF2	100	87.069	Periophthalmus_magnuspinnatus
ENSHCOG00000004025	UPF2	92	71.023	ENSPEMG00000015731	Upf2	99	70.822	Peromyscus_maniculatus_bairdii
ENSHCOG00000004025	UPF2	99	80.497	ENSPCIG00000006656	UPF2	100	80.264	Phascolarctos_cinereus
ENSHCOG00000004025	UPF2	99	89.774	ENSPFOG00000017118	UPF2	100	89.774	Poecilia_formosa
ENSHCOG00000004025	UPF2	99	89.852	ENSPLAG00000005094	UPF2	100	89.852	Poecilia_latipinna
ENSHCOG00000004025	UPF2	99	89.930	ENSPMEG00000017009	UPF2	100	89.930	Poecilia_mexicana
ENSHCOG00000004025	UPF2	99	89.263	ENSPREG00000021880	UPF2	100	89.263	Poecilia_reticulata
ENSHCOG00000004025	UPF2	65	83.867	ENSPPYG00000002089	-	100	83.867	Pongo_abelii
ENSHCOG00000004025	UPF2	99	68.842	ENSPCAG00000000684	UPF2	100	68.765	Procavia_capensis
ENSHCOG00000004025	UPF2	99	78.288	ENSPCOG00000021656	UPF2	100	77.977	Propithecus_coquereli
ENSHCOG00000004025	UPF2	99	74.321	ENSPVAG00000017286	UPF2	100	74.321	Pteropus_vampyrus
ENSHCOG00000004025	UPF2	99	88.525	ENSPNYG00000017096	UPF2	100	88.603	Pundamilia_nyererei
ENSHCOG00000004025	UPF2	99	86.703	ENSPNAG00000009357	UPF2	100	87.102	Pygocentrus_nattereri
ENSHCOG00000004025	UPF2	99	76.375	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSHCOG00000004025	UPF2	99	79.222	ENSRBIG00000037780	UPF2	100	79.533	Rhinopithecus_bieti
ENSHCOG00000004025	UPF2	99	80.202	ENSRROG00000043547	UPF2	100	80.512	Rhinopithecus_roxellana
ENSHCOG00000004025	UPF2	99	79.409	ENSSBOG00000020012	UPF2	100	79.720	Saimiri_boliviensis_boliviensis
ENSHCOG00000004025	UPF2	99	83.826	ENSSFOG00015023788	upf2	100	83.826	Scleropages_formosus
ENSHCOG00000004025	UPF2	89	89.670	ENSSMAG00000007637	UPF2	100	88.112	Scophthalmus_maximus
ENSHCOG00000004025	UPF2	100	91.409	ENSSDUG00000017244	UPF2	100	91.409	Seriola_dumerili
ENSHCOG00000004025	UPF2	99	88.898	ENSSLDG00000016866	UPF2	100	88.428	Seriola_lalandi_dorsalis
ENSHCOG00000004025	UPF2	99	78.261	ENSSARG00000008615	UPF2	100	80.124	Sorex_araneus
ENSHCOG00000004025	UPF2	99	78.383	ENSSPUG00000014544	UPF2	99	78.383	Sphenodon_punctatus
ENSHCOG00000004025	UPF2	68	83.886	ENSSSCG00000011117	-	99	83.753	Sus_scrofa
ENSHCOG00000004025	UPF2	90	84.469	ENSTGUG00000002163	-	100	80.763	Taeniopygia_guttata
ENSHCOG00000004025	UPF2	100	89.490	ENSTRUG00000007519	UPF2	100	89.490	Takifugu_rubripes
ENSHCOG00000004025	UPF2	99	86.693	ENSTNIG00000004453	UPF2	100	86.693	Tetraodon_nigroviridis
ENSHCOG00000004025	UPF2	93	71.823	ENSTBEG00000012679	UPF2	93	72.932	Tupaia_belangeri
ENSHCOG00000004025	UPF2	99	79.705	ENSTTRG00000016388	UPF2	100	79.705	Tursiops_truncatus
ENSHCOG00000004025	UPF2	87	94.382	ENSUAMG00000023560	UPF2	99	85.616	Ursus_americanus
ENSHCOG00000004025	UPF2	99	80.808	ENSUMAG00000012953	UPF2	95	80.808	Ursus_maritimus
ENSHCOG00000004025	UPF2	82	93.548	ENSVPAG00000006763	UPF2	86	93.548	Vicugna_pacos
ENSHCOG00000004025	UPF2	99	80.886	ENSVVUG00000006166	UPF2	100	80.886	Vulpes_vulpes
ENSHCOG00000004025	UPF2	99	77.994	ENSXETG00000033103	UPF2	91	83.290	Xenopus_tropicalis
ENSHCOG00000004025	UPF2	99	89.601	ENSXCOG00000011604	UPF2	100	89.601	Xiphophorus_couchianus
ENSHCOG00000004025	UPF2	99	89.774	ENSXMAG00000017209	UPF2	100	89.774	Xiphophorus_maculatus