EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000004151 (Gene tree)
Gene ID: 109519695
Gene Symbol: PABPN1L
Alias: ePABP2
Full Name: poly(A) binding protein nuclear 1 like%2C cytoplasmic
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 5338 bases
Position: chrKV880078.1:1760642-1765979
Accession: 109519695
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000019076	RRM_1	PF00076.22	5.7e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000009629	PABPN1L-201	2317	XM_019876389	ENSHCOP00000019076	270 (aa)	XP_019731948	UPI00094E0B5C

Gene Model

Click here to download ENSHCOG00000004151's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004151's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000004151	PABPN1L	72	56.186	ENSHCOG00000004655	pabpn1	65	59.877

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000004151	PABPN1L	72	50.490	ENSG00000205022	PABPN1L	62	51.445	Homo_sapiens
ENSHCOG00000004151	PABPN1L	90	87.295	ENSAPOG00000000685	PABPN1L	85	81.203	Acanthochromis_polyacanthus
ENSHCOG00000004151	PABPN1L	90	82.787	ENSACIG00000021400	PABPN1L	98	81.557	Amphilophus_citrinellus
ENSHCOG00000004151	PABPN1L	99	85.448	ENSAOCG00000019844	PABPN1L	100	85.075	Amphiprion_ocellaris
ENSHCOG00000004151	PABPN1L	99	85.075	ENSAPEG00000019534	PABPN1L	100	84.701	Amphiprion_percula
ENSHCOG00000004151	PABPN1L	90	85.246	ENSATEG00000011646	PABPN1L	95	86.066	Anabas_testudineus
ENSHCOG00000004151	PABPN1L	63	56.140	ENSACAG00000013250	PABPN1L	79	53.012	Anolis_carolinensis
ENSHCOG00000004151	PABPN1L	72	51.724	ENSANAG00000038178	PABPN1L	59	54.819	Aotus_nancymaae
ENSHCOG00000004151	PABPN1L	99	85.075	ENSACLG00000025147	PABPN1L	100	84.701	Astatotilapia_calliptera
ENSHCOG00000004151	PABPN1L	72	52.195	ENSCJAG00000045284	PABPN1L	63	50.867	Callithrix_jacchus
ENSHCOG00000004151	PABPN1L	74	50.704	ENSCCAG00000027631	PABPN1L	62	51.977	Cebus_capucinus
ENSHCOG00000004151	PABPN1L	69	49.029	ENSCGRG00001013211	Pabpn1l	64	48.315	Cricetulus_griseus_chok1gshd
ENSHCOG00000004151	PABPN1L	69	49.029	ENSCGRG00000015868	Pabpn1l	64	48.315	Cricetulus_griseus_crigri
ENSHCOG00000004151	PABPN1L	99	79.926	ENSCSEG00000001142	pabpn1l	100	79.926	Cynoglossus_semilaevis
ENSHCOG00000004151	PABPN1L	99	83.955	ENSCVAG00000015547	PABPN1L	100	85.075	Cyprinodon_variegatus
ENSHCOG00000004151	PABPN1L	69	50.802	ENSDNOG00000034677	PABPN1L	50	62.222	Dasypus_novemcinctus
ENSHCOG00000004151	PABPN1L	73	48.500	ENSEASG00005000777	PABPN1L	62	48.235	Equus_asinus_asinus
ENSHCOG00000004151	PABPN1L	96	63.707	ENSELUG00000018385	PABPN1L	96	62.934	Esox_lucius
ENSHCOG00000004151	PABPN1L	66	50.838	ENSFCAG00000010465	PABPN1L	62	49.133	Felis_catus
ENSHCOG00000004151	PABPN1L	67	56.522	ENSFALG00000003319	PABPN1L	61	54.777	Ficedula_albicollis
ENSHCOG00000004151	PABPN1L	59	54.717	ENSFDAG00000021067	PABPN1L	63	47.093	Fukomys_damarensis
ENSHCOG00000004151	PABPN1L	99	83.582	ENSFHEG00000018295	PABPN1L	100	83.582	Fundulus_heteroclitus
ENSHCOG00000004151	PABPN1L	99	71.691	ENSGMOG00000001475	PABPN1L	100	69.853	Gadus_morhua
ENSHCOG00000004151	PABPN1L	60	57.764	ENSGALG00000006242	PABPN1L	66	62.393	Gallus_gallus
ENSHCOG00000004151	PABPN1L	99	83.582	ENSGAFG00000012565	PABPN1L	100	84.701	Gambusia_affinis
ENSHCOG00000004151	PABPN1L	99	79.412	ENSGACG00000015428	PABPN1L	100	79.044	Gasterosteus_aculeatus
ENSHCOG00000004151	PABPN1L	99	85.075	ENSHBUG00000002388	PABPN1L	100	85.075	Haplochromis_burtoni
ENSHCOG00000004151	PABPN1L	75	47.170	ENSJJAG00000006433	Pabpn1l	61	48.837	Jaculus_jaculus
ENSHCOG00000004151	PABPN1L	80	89.302	ENSKMAG00000001112	PABPN1L	95	89.720	Kryptolebias_marmoratus
ENSHCOG00000004151	PABPN1L	100	80.882	ENSLBEG00000011647	PABPN1L	97	80.882	Labrus_bergylta
ENSHCOG00000004151	PABPN1L	74	51.613	ENSMFAG00000002924	PABPN1L	62	51.977	Macaca_fascicularis
ENSHCOG00000004151	PABPN1L	74	51.852	ENSMMUG00000012438	PABPN1L	62	52.542	Macaca_mulatta
ENSHCOG00000004151	PABPN1L	74	51.613	ENSMNEG00000044808	PABPN1L	62	51.977	Macaca_nemestrina
ENSHCOG00000004151	PABPN1L	99	85.075	ENSMZEG00005002186	PABPN1L	100	84.701	Maylandia_zebra
ENSHCOG00000004151	PABPN1L	60	52.071	ENSMAUG00000014032	Pabpn1l	60	50.932	Mesocricetus_auratus
ENSHCOG00000004151	PABPN1L	69	49.749	ENSMICG00000028179	PABPN1L	58	51.553	Microcebus_murinus
ENSHCOG00000004151	PABPN1L	73	87.374	ENSMMOG00000017714	PABPN1L	86	87.374	Mola_mola
ENSHCOG00000004151	PABPN1L	74	49.756	ENSMODG00000003873	-	61	48.193	Monodelphis_domestica
ENSHCOG00000004151	PABPN1L	99	81.716	ENSMALG00000016926	PABPN1L	100	81.716	Monopterus_albus
ENSHCOG00000004151	PABPN1L	90	85.597	ENSNBRG00000017078	PABPN1L	100	86.420	Neolamprologus_brichardi
ENSHCOG00000004151	PABPN1L	69	52.239	ENSOPRG00000005597	PABPN1L	62	51.163	Ochotona_princeps
ENSHCOG00000004151	PABPN1L	99	79.851	ENSORLG00000026560	PABPN1L	100	79.851	Oryzias_latipes
ENSHCOG00000004151	PABPN1L	99	79.851	ENSORLG00020015068	PABPN1L	100	79.851	Oryzias_latipes_hni
ENSHCOG00000004151	PABPN1L	99	79.851	ENSORLG00015000397	PABPN1L	100	79.851	Oryzias_latipes_hsok
ENSHCOG00000004151	PABPN1L	99	79.478	ENSOMEG00000017896	PABPN1L	72	79.104	Oryzias_melastigma
ENSHCOG00000004151	PABPN1L	72	51.208	ENSPPAG00000028866	PABPN1L	62	51.445	Pan_paniscus
ENSHCOG00000004151	PABPN1L	66	50.838	ENSPPRG00000015106	PABPN1L	62	48.256	Panthera_pardus
ENSHCOG00000004151	PABPN1L	66	48.315	ENSPTIG00000015606	PABPN1L	64	48.256	Panthera_tigris_altaica
ENSHCOG00000004151	PABPN1L	72	51.208	ENSPTRG00000031120	PABPN1L	62	51.445	Pan_troglodytes
ENSHCOG00000004151	PABPN1L	61	63.690	ENSPSIG00000003404	PABPN1L	68	57.333	Pelodiscus_sinensis
ENSHCOG00000004151	PABPN1L	79	84.038	ENSPMGG00000013927	PABPN1L	95	83.645	Periophthalmus_magnuspinnatus
ENSHCOG00000004151	PABPN1L	74	47.248	ENSPEMG00000016624	Pabpn1l	65	49.153	Peromyscus_maniculatus_bairdii
ENSHCOG00000004151	PABPN1L	99	83.582	ENSPFOG00000007001	PABPN1L	100	84.701	Poecilia_formosa
ENSHCOG00000004151	PABPN1L	99	83.582	ENSPLAG00000018431	PABPN1L	100	84.701	Poecilia_latipinna
ENSHCOG00000004151	PABPN1L	64	82.022	ENSPMEG00000000169	-	91	79.891	Poecilia_mexicana
ENSHCOG00000004151	PABPN1L	99	83.582	ENSPMEG00000009108	PABPN1L	100	84.701	Poecilia_mexicana
ENSHCOG00000004151	PABPN1L	80	88.479	ENSPREG00000022533	PABPN1L	93	88.785	Poecilia_reticulata
ENSHCOG00000004151	PABPN1L	69	50.249	ENSPCOG00000024077	PABPN1L	58	51.553	Propithecus_coquereli
ENSHCOG00000004151	PABPN1L	73	50.505	ENSPVAG00000002716	PABPN1L	61	51.163	Pteropus_vampyrus
ENSHCOG00000004151	PABPN1L	99	85.075	ENSPNYG00000004803	PABPN1L	100	84.701	Pundamilia_nyererei
ENSHCOG00000004151	PABPN1L	72	49.524	ENSRROG00000032240	-	62	49.718	Rhinopithecus_roxellana
ENSHCOG00000004151	PABPN1L	74	50.237	ENSSBOG00000018410	PABPN1L	62	51.724	Saimiri_boliviensis_boliviensis
ENSHCOG00000004151	PABPN1L	99	81.752	ENSSMAG00000021348	PABPN1L	100	82.482	Scophthalmus_maximus
ENSHCOG00000004151	PABPN1L	99	86.194	ENSSDUG00000006986	PABPN1L	100	85.821	Seriola_dumerili
ENSHCOG00000004151	PABPN1L	99	86.567	ENSSLDG00000021845	PABPN1L	100	86.194	Seriola_lalandi_dorsalis
ENSHCOG00000004151	PABPN1L	99	85.448	ENSSPAG00000017978	PABPN1L	100	85.448	Stegastes_partitus
ENSHCOG00000004151	PABPN1L	99	75.373	ENSTRUG00000024725	PABPN1L	100	75.373	Takifugu_rubripes
ENSHCOG00000004151	PABPN1L	71	89.062	ENSTNIG00000009416	PABPN1L	100	89.062	Tetraodon_nigroviridis
ENSHCOG00000004151	PABPN1L	60	55.233	ENSXETG00000011258	pabpn1l	77	51.744	Xenopus_tropicalis
ENSHCOG00000004151	PABPN1L	77	89.372	ENSXCOG00000003254	PABPN1L	93	88.785	Xiphophorus_couchianus
ENSHCOG00000004151	PABPN1L	79	84.507	ENSXMAG00000029090	PABPN1L	95	84.112	Xiphophorus_maculatus