EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000004397 (Gene tree)
Gene ID: 109527044
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 3542 bases
Position: chrKV880284.1:748617-752158
Accession: 109527044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000003118	zf-CCCH	PF00642.24	2.7e-20	1	2
ENSHCOP00000003118	zf-CCCH	PF00642.24	2.7e-20	2	2
ENSHCOP00000003118	zf-CCHC	PF00098.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000009276	-	2566	XM_019888723	ENSHCOP00000003118	265 (aa)	XP_019744282	UPI00094EB5F9

Gene Model

Click here to download ENSHCOG00000004397's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004397's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000004397	cpsf4	100	80.741	ENSG00000160917	CPSF4	100	98.214	Homo_sapiens
ENSHCOG00000004397	cpsf4	67	78.652	ENSAPOG00000004921	cpsf4	100	78.652	Acanthochromis_polyacanthus
ENSHCOG00000004397	cpsf4	100	78.519	ENSAMEG00000006252	CPSF4	100	81.111	Ailuropoda_melanoleuca
ENSHCOG00000004397	cpsf4	100	83.774	ENSACIG00000009248	cpsf4	100	83.774	Amphilophus_citrinellus
ENSHCOG00000004397	cpsf4	100	88.722	ENSAOCG00000019616	cpsf4	100	88.722	Amphiprion_ocellaris
ENSHCOG00000004397	cpsf4	100	88.722	ENSAPEG00000011679	cpsf4	100	88.722	Amphiprion_percula
ENSHCOG00000004397	cpsf4	100	89.139	ENSATEG00000007010	cpsf4	100	89.139	Anabas_testudineus
ENSHCOG00000004397	cpsf4	100	78.889	ENSACAG00000012941	CPSF4	89	78.889	Anolis_carolinensis
ENSHCOG00000004397	cpsf4	100	80.741	ENSANAG00000021360	CPSF4	100	80.741	Aotus_nancymaae
ENSHCOG00000004397	cpsf4	100	89.098	ENSACLG00000010374	cpsf4	100	89.098	Astatotilapia_calliptera
ENSHCOG00000004397	cpsf4	100	83.333	ENSAMXG00000031647	cpsf4	100	83.333	Astyanax_mexicanus
ENSHCOG00000004397	cpsf4	100	79.245	ENSBTAG00000002090	CPSF4	100	79.245	Bos_taurus
ENSHCOG00000004397	cpsf4	100	80.741	ENSCJAG00000015826	CPSF4	100	80.741	Callithrix_jacchus
ENSHCOG00000004397	cpsf4	100	81.111	ENSCAFG00000015036	CPSF4	99	86.826	Canis_familiaris
ENSHCOG00000004397	cpsf4	100	76.667	ENSCAFG00020014462	CPSF4	100	76.667	Canis_lupus_dingo
ENSHCOG00000004397	cpsf4	100	78.148	ENSCHIG00000014313	CPSF4	100	80.741	Capra_hircus
ENSHCOG00000004397	cpsf4	100	80.000	ENSTSYG00000005712	-	100	80.000	Carlito_syrichta
ENSHCOG00000004397	cpsf4	89	73.840	ENSTSYG00000008195	-	99	73.984	Carlito_syrichta
ENSHCOG00000004397	cpsf4	100	72.556	ENSTSYG00000014604	-	100	72.556	Carlito_syrichta
ENSHCOG00000004397	cpsf4	82	76.923	ENSCAPG00000013881	CPSF4	88	79.372	Cavia_aperea
ENSHCOG00000004397	cpsf4	100	79.623	ENSCPOG00000001783	CPSF4	100	79.623	Cavia_porcellus
ENSHCOG00000004397	cpsf4	100	80.741	ENSCCAG00000028291	CPSF4	100	80.741	Cebus_capucinus
ENSHCOG00000004397	cpsf4	100	80.741	ENSCATG00000038440	CPSF4	100	80.741	Cercocebus_atys
ENSHCOG00000004397	cpsf4	100	80.741	ENSCLAG00000007050	CPSF4	100	80.741	Chinchilla_lanigera
ENSHCOG00000004397	cpsf4	100	80.741	ENSCSAG00000017795	CPSF4	100	80.741	Chlorocebus_sabaeus
ENSHCOG00000004397	cpsf4	63	77.711	ENSCPBG00000010269	-	100	77.711	Chrysemys_picta_bellii
ENSHCOG00000004397	cpsf4	80	78.802	ENSCPBG00000020869	CPSF4	100	78.802	Chrysemys_picta_bellii
ENSHCOG00000004397	cpsf4	96	55.906	ENSCING00000021080	-	96	55.906	Ciona_intestinalis
ENSHCOG00000004397	cpsf4	96	52.669	ENSCSAVG00000011469	-	97	52.669	Ciona_savignyi
ENSHCOG00000004397	cpsf4	100	80.741	ENSCANG00000019384	CPSF4	100	80.741	Colobus_angolensis_palliatus
ENSHCOG00000004397	cpsf4	100	79.623	ENSCGRG00001024184	Cpsf4	100	79.623	Cricetulus_griseus_chok1gshd
ENSHCOG00000004397	cpsf4	100	78.519	ENSCGRG00000013892	Cpsf4	100	81.111	Cricetulus_griseus_crigri
ENSHCOG00000004397	cpsf4	100	87.970	ENSCSEG00000019055	cpsf4	100	87.970	Cynoglossus_semilaevis
ENSHCOG00000004397	cpsf4	100	88.346	ENSCVAG00000016528	cpsf4	100	88.346	Cyprinodon_variegatus
ENSHCOG00000004397	cpsf4	100	83.026	ENSDARG00000020217	cpsf4	100	83.026	Danio_rerio
ENSHCOG00000004397	cpsf4	100	78.519	ENSDNOG00000006344	CPSF4	100	81.111	Dasypus_novemcinctus
ENSHCOG00000004397	cpsf4	80	76.606	ENSDORG00000000742	Cpsf4	100	79.817	Dipodomys_ordii
ENSHCOG00000004397	cpsf4	100	53.135	FBgn0015621	Clp	99	55.137	Drosophila_melanogaster
ENSHCOG00000004397	cpsf4	71	93.333	ENSETEG00000002608	CPSF4	70	93.333	Echinops_telfairi
ENSHCOG00000004397	cpsf4	99	66.920	ENSEBUG00000012552	cpsf4	98	66.920	Eptatretus_burgeri
ENSHCOG00000004397	cpsf4	100	79.623	ENSEASG00005002487	CPSF4	100	79.623	Equus_asinus_asinus
ENSHCOG00000004397	cpsf4	100	78.519	ENSECAG00000007525	CPSF4	100	81.111	Equus_caballus
ENSHCOG00000004397	cpsf4	63	94.030	ENSEEUG00000002158	CPSF4	73	94.030	Erinaceus_europaeus
ENSHCOG00000004397	cpsf4	100	84.191	ENSELUG00000011481	cpsf4	100	84.191	Esox_lucius
ENSHCOG00000004397	cpsf4	100	78.519	ENSFCAG00000015070	CPSF4	100	81.111	Felis_catus
ENSHCOG00000004397	cpsf4	100	79.245	ENSFALG00000013799	CPSF4	100	79.245	Ficedula_albicollis
ENSHCOG00000004397	cpsf4	62	55.233	ENSFALG00000012906	-	100	55.233	Ficedula_albicollis
ENSHCOG00000004397	cpsf4	90	77.049	ENSFDAG00000014092	CPSF4	100	79.918	Fukomys_damarensis
ENSHCOG00000004397	cpsf4	100	87.218	ENSFHEG00000010880	cpsf4	100	87.218	Fundulus_heteroclitus
ENSHCOG00000004397	cpsf4	100	81.685	ENSGMOG00000002330	cpsf4	100	81.685	Gadus_morhua
ENSHCOG00000004397	cpsf4	100	78.868	ENSGALG00000004714	CPSF4	100	78.868	Gallus_gallus
ENSHCOG00000004397	cpsf4	99	34.759	ENSGALG00000004441	-	98	34.759	Gallus_gallus
ENSHCOG00000004397	cpsf4	100	88.302	ENSGAFG00000010580	cpsf4	100	88.302	Gambusia_affinis
ENSHCOG00000004397	cpsf4	100	83.521	ENSGACG00000007792	cpsf4	100	83.521	Gasterosteus_aculeatus
ENSHCOG00000004397	cpsf4	100	80.741	ENSGAGG00000021835	CPSF4	100	80.741	Gopherus_agassizii
ENSHCOG00000004397	cpsf4	62	78.182	ENSGAGG00000020579	-	92	78.182	Gopherus_agassizii
ENSHCOG00000004397	cpsf4	100	80.741	ENSGGOG00000015131	CPSF4	100	80.741	Gorilla_gorilla
ENSHCOG00000004397	cpsf4	100	89.098	ENSHBUG00000013699	cpsf4	100	89.098	Haplochromis_burtoni
ENSHCOG00000004397	cpsf4	100	80.812	ENSHGLG00000017150	CPSF4	100	80.812	Heterocephalus_glaber_female
ENSHCOG00000004397	cpsf4	67	63.842	ENSHGLG00100017302	-	100	51.698	Heterocephalus_glaber_male
ENSHCOG00000004397	cpsf4	87	77.966	ENSHGLG00100009215	-	100	77.966	Heterocephalus_glaber_male
ENSHCOG00000004397	cpsf4	100	81.387	ENSIPUG00000017147	cpsf4	100	82.117	Ictalurus_punctatus
ENSHCOG00000004397	cpsf4	100	79.623	ENSSTOG00000001688	CPSF4	100	81.111	Ictidomys_tridecemlineatus
ENSHCOG00000004397	cpsf4	100	80.741	ENSJJAG00000019426	Cpsf4	100	80.741	Jaculus_jaculus
ENSHCOG00000004397	cpsf4	100	85.714	ENSKMAG00000015642	cpsf4	100	85.714	Kryptolebias_marmoratus
ENSHCOG00000004397	cpsf4	100	59.774	ENSLACG00000018470	-	100	59.774	Latimeria_chalumnae
ENSHCOG00000004397	cpsf4	100	78.967	ENSLACG00000010938	CPSF4	100	78.967	Latimeria_chalumnae
ENSHCOG00000004397	cpsf4	100	80.669	ENSLOCG00000004814	cpsf4	100	80.669	Lepisosteus_oculatus
ENSHCOG00000004397	cpsf4	100	78.889	ENSLAFG00000000159	CPSF4	100	81.481	Loxodonta_africana
ENSHCOG00000004397	cpsf4	100	80.741	ENSMFAG00000001462	CPSF4	100	80.741	Macaca_fascicularis
ENSHCOG00000004397	cpsf4	100	80.741	ENSMMUG00000019191	CPSF4	100	80.741	Macaca_mulatta
ENSHCOG00000004397	cpsf4	100	80.741	ENSMNEG00000032306	CPSF4	100	80.741	Macaca_nemestrina
ENSHCOG00000004397	cpsf4	100	80.741	ENSMLEG00000034721	CPSF4	100	80.741	Mandrillus_leucophaeus
ENSHCOG00000004397	cpsf4	100	87.970	ENSMAMG00000006244	cpsf4	100	87.970	Mastacembelus_armatus
ENSHCOG00000004397	cpsf4	100	89.098	ENSMZEG00005007515	cpsf4	100	89.098	Maylandia_zebra
ENSHCOG00000004397	cpsf4	87	77.056	ENSMGAG00000004235	CPSF4	100	77.056	Meleagris_gallopavo
ENSHCOG00000004397	cpsf4	100	78.519	ENSMAUG00000021253	Cpsf4	100	81.111	Mesocricetus_auratus
ENSHCOG00000004397	cpsf4	100	80.741	ENSMICG00000017429	CPSF4	100	80.741	Microcebus_murinus
ENSHCOG00000004397	cpsf4	100	78.519	ENSMOCG00000014901	Cpsf4	100	81.111	Microtus_ochrogaster
ENSHCOG00000004397	cpsf4	100	89.098	ENSMMOG00000001813	cpsf4	100	89.098	Mola_mola
ENSHCOG00000004397	cpsf4	100	81.481	ENSMODG00000001367	CPSF4	100	81.481	Monodelphis_domestica
ENSHCOG00000004397	cpsf4	100	86.466	ENSMALG00000012611	cpsf4	100	86.466	Monopterus_albus
ENSHCOG00000004397	cpsf4	100	79.623	MGP_CAROLIEiJ_G0028012	Cpsf4	100	81.111	Mus_caroli
ENSHCOG00000004397	cpsf4	100	79.623	ENSMUSG00000029625	Cpsf4	100	81.111	Mus_musculus
ENSHCOG00000004397	cpsf4	100	79.623	MGP_PahariEiJ_G0024581	Cpsf4	100	81.111	Mus_pahari
ENSHCOG00000004397	cpsf4	100	80.741	MGP_SPRETEiJ_G0029013	Cpsf4	100	80.741	Mus_spretus
ENSHCOG00000004397	cpsf4	100	78.519	ENSMPUG00000016508	CPSF4	100	81.111	Mustela_putorius_furo
ENSHCOG00000004397	cpsf4	87	77.489	ENSMLUG00000010980	CPSF4	100	77.489	Myotis_lucifugus
ENSHCOG00000004397	cpsf4	100	78.519	ENSNGAG00000001567	Cpsf4	100	81.111	Nannospalax_galili
ENSHCOG00000004397	cpsf4	91	88.430	ENSNBRG00000003943	cpsf4	98	88.430	Neolamprologus_brichardi
ENSHCOG00000004397	cpsf4	100	79.478	ENSNLEG00000011074	CPSF4	100	79.478	Nomascus_leucogenys
ENSHCOG00000004397	cpsf4	100	81.481	ENSMEUG00000006955	CPSF4	100	81.481	Notamacropus_eugenii
ENSHCOG00000004397	cpsf4	100	80.370	ENSOPRG00000013663	CPSF4	100	80.370	Ochotona_princeps
ENSHCOG00000004397	cpsf4	100	78.519	ENSODEG00000011181	-	100	81.111	Octodon_degus
ENSHCOG00000004397	cpsf4	98	67.816	ENSODEG00000018283	-	91	67.816	Octodon_degus
ENSHCOG00000004397	cpsf4	100	63.197	ENSODEG00000009779	-	100	63.197	Octodon_degus
ENSHCOG00000004397	cpsf4	100	89.098	ENSONIG00000008495	cpsf4	100	89.098	Oreochromis_niloticus
ENSHCOG00000004397	cpsf4	100	51.211	ENSOANG00000009568	-	100	51.211	Ornithorhynchus_anatinus
ENSHCOG00000004397	cpsf4	87	79.149	ENSOANG00000007729	CPSF4	100	79.149	Ornithorhynchus_anatinus
ENSHCOG00000004397	cpsf4	100	80.370	ENSOCUG00000002437	CPSF4	70	80.370	Oryctolagus_cuniculus
ENSHCOG00000004397	cpsf4	100	87.218	ENSORLG00000022798	cpsf4	100	87.218	Oryzias_latipes
ENSHCOG00000004397	cpsf4	100	87.218	ENSORLG00020008548	cpsf4	100	87.218	Oryzias_latipes_hni
ENSHCOG00000004397	cpsf4	100	86.842	ENSORLG00015019575	cpsf4	100	86.842	Oryzias_latipes_hsok
ENSHCOG00000004397	cpsf4	100	87.594	ENSOMEG00000005176	cpsf4	100	87.594	Oryzias_melastigma
ENSHCOG00000004397	cpsf4	100	80.741	ENSOGAG00000010884	CPSF4	100	80.741	Otolemur_garnettii
ENSHCOG00000004397	cpsf4	100	71.168	ENSOARG00000018668	CPSF4	100	71.168	Ovis_aries
ENSHCOG00000004397	cpsf4	100	80.741	ENSPPAG00000043355	CPSF4	100	80.741	Pan_paniscus
ENSHCOG00000004397	cpsf4	100	78.519	ENSPPRG00000003134	CPSF4	100	81.111	Panthera_pardus
ENSHCOG00000004397	cpsf4	90	77.778	ENSPTIG00000005604	CPSF4	90	80.247	Panthera_tigris_altaica
ENSHCOG00000004397	cpsf4	100	80.741	ENSPTRG00000019453	CPSF4	100	80.741	Pan_troglodytes
ENSHCOG00000004397	cpsf4	100	80.741	ENSPANG00000023123	CPSF4	100	80.741	Papio_anubis
ENSHCOG00000004397	cpsf4	100	80.657	ENSPKIG00000014278	cpsf4	100	80.657	Paramormyrops_kingsleyae
ENSHCOG00000004397	cpsf4	80	78.341	ENSPSIG00000011229	CPSF4	100	78.341	Pelodiscus_sinensis
ENSHCOG00000004397	cpsf4	81	59.535	ENSPSIG00000018198	-	100	59.535	Pelodiscus_sinensis
ENSHCOG00000004397	cpsf4	100	77.736	ENSPMGG00000017735	cpsf4	100	77.736	Periophthalmus_magnuspinnatus
ENSHCOG00000004397	cpsf4	100	78.519	ENSPEMG00000004508	Cpsf4	100	81.111	Peromyscus_maniculatus_bairdii
ENSHCOG00000004397	cpsf4	100	81.481	ENSPCIG00000024776	CPSF4	100	81.481	Phascolarctos_cinereus
ENSHCOG00000004397	cpsf4	100	88.302	ENSPFOG00000014912	cpsf4	100	88.302	Poecilia_formosa
ENSHCOG00000004397	cpsf4	100	81.509	ENSPLAG00000009599	cpsf4	100	81.509	Poecilia_latipinna
ENSHCOG00000004397	cpsf4	100	88.302	ENSPMEG00000009790	cpsf4	100	88.302	Poecilia_mexicana
ENSHCOG00000004397	cpsf4	100	87.925	ENSPREG00000018166	cpsf4	100	87.925	Poecilia_reticulata
ENSHCOG00000004397	cpsf4	87	79.149	ENSPPYG00000017378	CPSF4	100	79.149	Pongo_abelii
ENSHCOG00000004397	cpsf4	100	78.148	ENSPCAG00000001892	CPSF4	100	80.741	Procavia_capensis
ENSHCOG00000004397	cpsf4	100	78.519	ENSPCOG00000012771	CPSF4	100	81.111	Propithecus_coquereli
ENSHCOG00000004397	cpsf4	100	73.333	ENSPVAG00000007531	CPSF4	100	75.926	Pteropus_vampyrus
ENSHCOG00000004397	cpsf4	100	89.098	ENSPNYG00000018559	cpsf4	100	89.098	Pundamilia_nyererei
ENSHCOG00000004397	cpsf4	100	83.824	ENSPNAG00000003736	cpsf4	100	83.824	Pygocentrus_nattereri
ENSHCOG00000004397	cpsf4	100	79.623	ENSRNOG00000000985	Cpsf4	100	79.623	Rattus_norvegicus
ENSHCOG00000004397	cpsf4	87	79.574	ENSRBIG00000033886	CPSF4	100	79.574	Rhinopithecus_bieti
ENSHCOG00000004397	cpsf4	100	79.245	ENSRROG00000040431	CPSF4	100	79.245	Rhinopithecus_roxellana
ENSHCOG00000004397	cpsf4	100	80.741	ENSSBOG00000020493	CPSF4	100	80.741	Saimiri_boliviensis_boliviensis
ENSHCOG00000004397	cpsf4	100	81.481	ENSSHAG00000011533	CPSF4	100	81.481	Sarcophilus_harrisii
ENSHCOG00000004397	cpsf4	100	79.348	ENSSFOG00015007883	cpsf4	100	79.348	Scleropages_formosus
ENSHCOG00000004397	cpsf4	100	86.038	ENSSMAG00000006374	cpsf4	100	86.038	Scophthalmus_maximus
ENSHCOG00000004397	cpsf4	100	89.098	ENSSDUG00000018887	cpsf4	100	89.098	Seriola_dumerili
ENSHCOG00000004397	cpsf4	100	89.098	ENSSLDG00000019078	cpsf4	100	89.098	Seriola_lalandi_dorsalis
ENSHCOG00000004397	cpsf4	87	79.574	ENSSARG00000012416	CPSF4	100	79.574	Sorex_araneus
ENSHCOG00000004397	cpsf4	97	60.311	ENSSPUG00000014803	-	98	60.311	Sphenodon_punctatus
ENSHCOG00000004397	cpsf4	100	79.259	ENSSPUG00000003549	CPSF4	100	79.259	Sphenodon_punctatus
ENSHCOG00000004397	cpsf4	100	84.906	ENSSPAG00000006174	cpsf4	100	84.906	Stegastes_partitus
ENSHCOG00000004397	cpsf4	100	79.245	ENSSSCG00000026896	CPSF4	100	79.245	Sus_scrofa
ENSHCOG00000004397	cpsf4	100	78.277	ENSTGUG00000007552	CPSF4	100	78.277	Taeniopygia_guttata
ENSHCOG00000004397	cpsf4	100	87.594	ENSTRUG00000024220	cpsf4	100	87.594	Takifugu_rubripes
ENSHCOG00000004397	cpsf4	100	86.466	ENSTNIG00000006265	cpsf4	100	87.218	Tetraodon_nigroviridis
ENSHCOG00000004397	cpsf4	87	71.064	ENSTBEG00000011406	CPSF4	100	71.064	Tupaia_belangeri
ENSHCOG00000004397	cpsf4	100	71.747	ENSTTRG00000003007	CPSF4	100	71.747	Tursiops_truncatus
ENSHCOG00000004397	cpsf4	92	78.601	ENSUAMG00000008051	CPSF4	85	78.601	Ursus_americanus
ENSHCOG00000004397	cpsf4	100	79.623	ENSUMAG00000009474	CPSF4	100	79.623	Ursus_maritimus
ENSHCOG00000004397	cpsf4	100	79.623	ENSVVUG00000008824	CPSF4	100	79.623	Vulpes_vulpes
ENSHCOG00000004397	cpsf4	100	74.643	ENSXETG00000009892	cpsf4	100	76.786	Xenopus_tropicalis
ENSHCOG00000004397	cpsf4	99	60.150	ENSXETG00000004641	cpsf4l	99	60.150	Xenopus_tropicalis
ENSHCOG00000004397	cpsf4	100	87.925	ENSXCOG00000016040	cpsf4	100	87.925	Xiphophorus_couchianus
ENSHCOG00000004397	cpsf4	100	88.302	ENSXMAG00000024670	cpsf4	100	88.302	Xiphophorus_maculatus