EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000004424 (Gene tree)
Gene ID: 109517734
Gene Symbol: RNPS1
Alias: wu:fa19a11|zgc:65775
Full Name: RNA-binding protein with serine-rich domain 1-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 4506 bases
Position: chrKV880008.1:112274-116779
Accession: 109517734
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000019259	RRM_1	PF00076.22	3.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000009211	RNPS1-201	1617	XM_019873066	ENSHCOP00000019259	285 (aa)	XP_019728625	UPI00094E090D

Gene Model

Click here to download ENSHCOG00000004424's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03013	RNA transport	KEGG
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004424's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000004424	RNPS1	83	69.915	ENSAPOG00000017310	RNPS1	74	69.787	Acanthochromis_polyacanthus
ENSHCOG00000004424	RNPS1	83	70.042	ENSAOCG00000002404	RNPS1	83	72.996	Amphiprion_ocellaris
ENSHCOG00000004424	RNPS1	82	69.915	ENSAPEG00000006497	RNPS1	80	72.881	Amphiprion_percula
ENSHCOG00000004424	RNPS1	83	82.278	ENSATEG00000024267	RNPS1	83	75.527	Anabas_testudineus
ENSHCOG00000004424	RNPS1	84	51.417	ENSAPLG00000006231	RNPS1	51	76.147	Anas_platyrhynchos
ENSHCOG00000004424	RNPS1	93	60.821	ENSCATG00000042361	-	53	75.229	Cercocebus_atys
ENSHCOG00000004424	RNPS1	82	77.966	ENSCSEG00000015997	RNPS1	80	61.603	Cynoglossus_semilaevis
ENSHCOG00000004424	RNPS1	78	81.448	ENSCVAG00000010868	RNPS1	75	80.184	Cyprinodon_variegatus
ENSHCOG00000004424	RNPS1	76	74.537	ENSELUG00000015003	RNPS1	75	68.664	Esox_lucius
ENSHCOG00000004424	RNPS1	74	76.415	ENSFHEG00000011705	RNPS1	75	72.477	Fundulus_heteroclitus
ENSHCOG00000004424	RNPS1	78	80.995	ENSGAFG00000005457	RNPS1	75	79.724	Gambusia_affinis
ENSHCOG00000004424	RNPS1	83	73.529	ENSGACG00000011261	RNPS1	83	78.151	Gasterosteus_aculeatus
ENSHCOG00000004424	RNPS1	83	85.593	ENSKMAG00000009135	RNPS1	82	83.475	Kryptolebias_marmoratus
ENSHCOG00000004424	RNPS1	85	61.885	ENSMAMG00000021609	-	83	75.105	Mastacembelus_armatus
ENSHCOG00000004424	RNPS1	76	72.018	ENSMMOG00000010863	RNPS1	75	70.833	Mola_mola
ENSHCOG00000004424	RNPS1	83	69.915	ENSORLG00000008033	RNPS1	94	66.351	Oryzias_latipes
ENSHCOG00000004424	RNPS1	82	69.787	ENSORLG00020020207	RNPS1	82	67.234	Oryzias_latipes_hni
ENSHCOG00000004424	RNPS1	82	70.213	ENSORLG00015000305	-	82	67.660	Oryzias_latipes_hsok
ENSHCOG00000004424	RNPS1	55	65.823	ENSPCIG00000016114	-	53	76.147	Phascolarctos_cinereus
ENSHCOG00000004424	RNPS1	78	81.900	ENSPFOG00000009978	RNPS1	75	80.645	Poecilia_formosa
ENSHCOG00000004424	RNPS1	78	81.900	ENSPLAG00000009343	RNPS1	75	80.645	Poecilia_latipinna
ENSHCOG00000004424	RNPS1	78	81.900	ENSPMEG00000008552	RNPS1	75	80.645	Poecilia_mexicana
ENSHCOG00000004424	RNPS1	78	81.900	ENSPREG00000001843	RNPS1	75	80.645	Poecilia_reticulata
ENSHCOG00000004424	RNPS1	83	74.274	ENSSFOG00015022746	RNPS1	85	66.390	Scleropages_formosus
ENSHCOG00000004424	RNPS1	83	73.729	ENSSMAG00000016933	RNPS1	82	69.915	Scophthalmus_maximus
ENSHCOG00000004424	RNPS1	83	83.122	ENSSDUG00000011453	RNPS1	83	76.793	Seriola_dumerili
ENSHCOG00000004424	RNPS1	80	72.926	ENSSLDG00000021341	RNPS1	81	70.742	Seriola_lalandi_dorsalis
ENSHCOG00000004424	RNPS1	83	70.464	ENSSPAG00000009383	RNPS1	83	73.840	Stegastes_partitus
ENSHCOG00000004424	RNPS1	83	72.385	ENSTRUG00000008602	RNPS1	83	76.151	Takifugu_rubripes
ENSHCOG00000004424	RNPS1	83	82.203	ENSXMAG00000004827	RNPS1	82	80.932	Xiphophorus_maculatus