EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHCOG00000004655 (Gene tree)
Gene ID
109516996
Gene Symbol
pabpn1
Alias
fb19c03|wu:fb17e03|wu:fb18c06|wu:fb19c03|zgc:85979|zgc:92452
Full Name
poly(A) binding protein nuclear 1
Gene Type
protein_coding
Species
Hippocampus_comes
Status
putative
Strand
Plus strand
Length
7311 bases
Position
chrKV879988.1:289445-296755
Accession
109516996
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHCOP00000003347RRM_1PF00076.221.9e-1711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHCOT00000008892-2387XM_019871860ENSHCOP00000003347231 (aa)XP_019727419UPI00094ECFEF
Gene Model
Click here to download ENSHCOG00000004655's gene model file
Pathways
Pathway IDPathway NameSource
hcq03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004655's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHCOG00000004655pabpn16559.877ENSHCOG00000004151PABPN1L7256.186
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHCOG00000004655pabpn19971.674ENSG00000258643BCL2L2-PABPN17068.534Homo_sapiens
ENSHCOG00000004655pabpn18681.553ENSG00000100836PABPN19476.647Homo_sapiens
ENSHCOG00000004655pabpn110097.414ENSAPOG00000016425pabpn110097.414Acanthochromis_polyacanthus
ENSHCOG00000004655pabpn18183.158ENSAMEG00000007048BCL2L2-PABPN110079.365Ailuropoda_melanoleuca
ENSHCOG00000004655pabpn19596.833ENSACIG00000021744pabpn110097.159Amphilophus_citrinellus
ENSHCOG00000004655pabpn110097.414ENSAOCG00000015805pabpn110097.414Amphiprion_ocellaris
ENSHCOG00000004655pabpn110097.414ENSAPEG00000009623pabpn110097.414Amphiprion_percula
ENSHCOG00000004655pabpn110097.845ENSATEG00000020531pabpn110097.845Anabas_testudineus
ENSHCOG00000004655pabpn18180.526ENSACAG00000006185-8168.750Anolis_carolinensis
ENSHCOG00000004655pabpn19967.886ENSANAG00000024513-8472.199Aotus_nancymaae
ENSHCOG00000004655pabpn19596.396ENSACLG00000016374pabpn17796.396Astatotilapia_calliptera
ENSHCOG00000004655pabpn110096.567ENSAMXG00000000452pabpn110096.567Astyanax_mexicanus
ENSHCOG00000004655pabpn18475.897ENSBTAG00000050594-7474.879Bos_taurus
ENSHCOG00000004655pabpn18181.771ENSBTAG00000053753-7178.010Bos_taurus
ENSHCOG00000004655pabpn18482.828ENSBTAG00000006884PABPN18666.160Bos_taurus
ENSHCOG00000004655pabpn16258.904WBGene00003904pabp-28453.977Caenorhabditis_elegans
ENSHCOG00000004655pabpn17179.167ENSCJAG00000004407-8474.850Callithrix_jacchus
ENSHCOG00000004655pabpn19975.107ENSCJAG00000007960-8472.414Callithrix_jacchus
ENSHCOG00000004655pabpn18681.553ENSCAFG00000011482PABPN18667.681Canis_familiaris
ENSHCOG00000004655pabpn18681.553ENSCAFG00020007298-8667.300Canis_lupus_dingo
ENSHCOG00000004655pabpn18681.553ENSCAFG00020006651-8667.300Canis_lupus_dingo
ENSHCOG00000004655pabpn18681.553ENSCHIG00000012184PABPN18667.300Capra_hircus
ENSHCOG00000004655pabpn19971.674ENSTSYG00000033996BCL2L2-PABPN19476.647Carlito_syrichta
ENSHCOG00000004655pabpn16081.295ENSCAPG00000009461-9184.375Cavia_aperea
ENSHCOG00000004655pabpn18681.068ENSCPOG00000025574PABPN16877.404Cavia_porcellus
ENSHCOG00000004655pabpn19975.107ENSCCAG00000033954BCL2L2-PABPN18472.414Cebus_capucinus
ENSHCOG00000004655pabpn19975.107ENSCATG00000038536BCL2L2-PABPN18472.414Cercocebus_atys
ENSHCOG00000004655pabpn16580.795ENSCLAG00000012423PABPN15676.000Chinchilla_lanigera
ENSHCOG00000004655pabpn18680.097ENSCSAG00000016036PABPN18666.160Chlorocebus_sabaeus
ENSHCOG00000004655pabpn18971.905ENSCHOG00000004798BCL2L2-PABPN19266.667Choloepus_hoffmanni
ENSHCOG00000004655pabpn17183.333ENSCPBG00000026060-9479.042Chrysemys_picta_bellii
ENSHCOG00000004655pabpn19063.810ENSCING00000012468-8963.333Ciona_intestinalis
ENSHCOG00000004655pabpn17665.537ENSCSAVG00000002001-9363.855Ciona_savignyi
ENSHCOG00000004655pabpn19971.674ENSCANG00000009750BCL2L2-PABPN19476.647Colobus_angolensis_palliatus
ENSHCOG00000004655pabpn18570.707ENSCANG00000030980-8761.603Colobus_angolensis_palliatus
ENSHCOG00000004655pabpn18681.553ENSCGRG00001019696Pabpn19476.647Cricetulus_griseus_chok1gshd
ENSHCOG00000004655pabpn16390.476ENSCGRG00000011102Pabpn19190.476Cricetulus_griseus_crigri
ENSHCOG00000004655pabpn110096.121ENSCSEG00000008774pabpn110096.121Cynoglossus_semilaevis
ENSHCOG00000004655pabpn110087.983ENSCVAG00000003152pabpn110089.270Cyprinodon_variegatus
ENSHCOG00000004655pabpn17555.932ENSDARG00000087996pabpn1l7964.844Danio_rerio
ENSHCOG00000004655pabpn110096.121ENSDARG00000045373pabpn110096.818Danio_rerio
ENSHCOG00000004655pabpn18681.553ENSDNOG00000023682PABPN18667.300Dasypus_novemcinctus
ENSHCOG00000004655pabpn17665.537ENSDORG00000023928-9263.855Dipodomys_ordii
ENSHCOG00000004655pabpn18681.553ENSDORG00000028966-8666.920Dipodomys_ordii
ENSHCOG00000004655pabpn110058.228FBgn0005648Pabp29259.535Drosophila_melanogaster
ENSHCOG00000004655pabpn19972.414ENSEBUG00000002322pabpn19969.828Eptatretus_burgeri
ENSHCOG00000004655pabpn18681.553ENSEASG00005011716PABPN18667.300Equus_asinus_asinus
ENSHCOG00000004655pabpn18481.683ENSECAG00000011652PABPN18170.661Equus_caballus
ENSHCOG00000004655pabpn18680.976ENSEEUG00000012973-7180.769Erinaceus_europaeus
ENSHCOG00000004655pabpn110088.608ENSELUG00000022654pabpn110091.139Esox_lucius
ENSHCOG00000004655pabpn18681.553ENSFCAG00000031922PABPN18667.300Felis_catus
ENSHCOG00000004655pabpn17180.357ENSFDAG00000018381BCL2L2-PABPN19476.048Fukomys_damarensis
ENSHCOG00000004655pabpn110094.828ENSFHEG00000007215pabpn110094.828Fundulus_heteroclitus
ENSHCOG00000004655pabpn19592.308ENSGMOG00000003922pabpn17595.305Gadus_morhua
ENSHCOG00000004655pabpn18378.680ENSGALG00000052930-6178.571Gallus_gallus
ENSHCOG00000004655pabpn110096.581ENSGAFG00000017099pabpn110096.581Gambusia_affinis
ENSHCOG00000004655pabpn19596.818ENSGACG00000002167pabpn110090.688Gasterosteus_aculeatus
ENSHCOG00000004655pabpn18969.231ENSGGOG00000039675-9163.180Gorilla_gorilla
ENSHCOG00000004655pabpn19975.107ENSGGOG00000022683-8472.414Gorilla_gorilla
ENSHCOG00000004655pabpn19465.385ENSGGOG00000025919-9863.514Gorilla_gorilla
ENSHCOG00000004655pabpn110097.845ENSHBUG00000019523pabpn110097.845Haplochromis_burtoni
ENSHCOG00000004655pabpn18681.068ENSHGLG00000002927-9289.796Heterocephalus_glaber_female
ENSHCOG00000004655pabpn18768.599ENSHGLG00000018588-7073.936Heterocephalus_glaber_female
ENSHCOG00000004655pabpn17162.275ENSHGLG00000009842-9360.241Heterocephalus_glaber_female
ENSHCOG00000004655pabpn19471.041ENSHGLG00100006673-9289.796Heterocephalus_glaber_male
ENSHCOG00000004655pabpn18768.599ENSHGLG00100015565-8765.066Heterocephalus_glaber_male
ENSHCOG00000004655pabpn17168.862ENSHGLG00100018935-9469.591Heterocephalus_glaber_male
ENSHCOG00000004655pabpn110096.121ENSIPUG00000008085PABPN110096.121Ictalurus_punctatus
ENSHCOG00000004655pabpn110083.190ENSIPUG00000000180-9985.776Ictalurus_punctatus
ENSHCOG00000004655pabpn17180.952ENSSTOG00000029847BCL2L2-PABPN19476.647Ictidomys_tridecemlineatus
ENSHCOG00000004655pabpn17180.952ENSJJAG00000023507Gm205219476.647Jaculus_jaculus
ENSHCOG00000004655pabpn110096.137ENSKMAG00000018748pabpn110096.137Kryptolebias_marmoratus
ENSHCOG00000004655pabpn110097.845ENSLBEG00000027266pabpn110097.845Labrus_bergylta
ENSHCOG00000004655pabpn17687.079ENSLACG00000000646pabpn18184.324Latimeria_chalumnae
ENSHCOG00000004655pabpn19593.636ENSLOCG00000000796pabpn17793.396Lepisosteus_oculatus
ENSHCOG00000004655pabpn19062.911ENSLOCG00000004694pabpn1l9962.911Lepisosteus_oculatus
ENSHCOG00000004655pabpn16581.457ENSLAFG00000031227-9976.667Loxodonta_africana
ENSHCOG00000004655pabpn19971.674ENSMFAG00000032183BCL2L2-PABPN19476.647Macaca_fascicularis
ENSHCOG00000004655pabpn16173.427ENSMFAG00000031355-9969.504Macaca_fascicularis
ENSHCOG00000004655pabpn18667.317ENSMMUG00000048382-8955.762Macaca_mulatta
ENSHCOG00000004655pabpn19971.674ENSMMUG00000014747BCL2L2-PABPN110076.027Macaca_mulatta
ENSHCOG00000004655pabpn17967.914ENSMNEG00000035750-9969.504Macaca_nemestrina
ENSHCOG00000004655pabpn19975.107ENSMNEG00000045065BCL2L2-PABPN18472.414Macaca_nemestrina
ENSHCOG00000004655pabpn19971.674ENSMLEG00000043862BCL2L2-PABPN19476.647Mandrillus_leucophaeus
ENSHCOG00000004655pabpn17166.467ENSMLEG00000034623-9968.794Mandrillus_leucophaeus
ENSHCOG00000004655pabpn19996.943ENSMAMG00000007979pabpn17996.943Mastacembelus_armatus
ENSHCOG00000004655pabpn19598.636ENSMZEG00005011904pabpn17798.636Maylandia_zebra
ENSHCOG00000004655pabpn19972.103ENSMAUG00000007383Gm205218767.433Mesocricetus_auratus
ENSHCOG00000004655pabpn19975.536ENSMICG00000010002BCL2L2-PABPN18473.191Microcebus_murinus
ENSHCOG00000004655pabpn19971.674ENSMOCG00000018557Gm205219090.476Microtus_ochrogaster
ENSHCOG00000004655pabpn110098.276ENSMMOG00000005405pabpn110098.276Mola_mola
ENSHCOG00000004655pabpn18578.325ENSMODG00000004535-8666.284Monodelphis_domestica
ENSHCOG00000004655pabpn19997.817ENSMALG00000019612pabpn17897.817Monopterus_albus
ENSHCOG00000004655pabpn18680.583MGP_CAROLIEiJ_G0019277Pabpn19089.796Mus_caroli
ENSHCOG00000004655pabpn19971.245MGP_CAROLIEiJ_G0019276Gm205217068.103Mus_caroli
ENSHCOG00000004655pabpn19971.674ENSMUSG00000092232Gm205217068.534Mus_musculus
ENSHCOG00000004655pabpn18681.068ENSMUSG00000022194Pabpn19089.796Mus_musculus
ENSHCOG00000004655pabpn18681.068MGP_PahariEiJ_G0030295Pabpn110095.238Mus_pahari
ENSHCOG00000004655pabpn19971.674MGP_PahariEiJ_G0030294Gm205217068.534Mus_pahari
ENSHCOG00000004655pabpn19971.674MGP_SPRETEiJ_G0020165Gm205217068.534Mus_spretus
ENSHCOG00000004655pabpn18681.068MGP_SPRETEiJ_G0020166Pabpn19089.796Mus_spretus
ENSHCOG00000004655pabpn16681.410ENSMPUG00000006775-8783.562Mustela_putorius_furo
ENSHCOG00000004655pabpn18182.105ENSMLUG00000003800-10078.307Myotis_lucifugus
ENSHCOG00000004655pabpn18773.810ENSMLUG00000012452-8266.667Myotis_lucifugus
ENSHCOG00000004655pabpn18480.303ENSMLUG00000028677-8569.362Myotis_lucifugus
ENSHCOG00000004655pabpn19972.103ENSNGAG00000019529Gm205217068.966Nannospalax_galili
ENSHCOG00000004655pabpn19598.636ENSNBRG00000023955pabpn110097.159Neolamprologus_brichardi
ENSHCOG00000004655pabpn19971.674ENSNLEG00000015007-7477.885Nomascus_leucogenys
ENSHCOG00000004655pabpn16459.864ENSNLEG00000035292-9956.463Nomascus_leucogenys
ENSHCOG00000004655pabpn18668.780ENSNLEG00000030598-7767.633Nomascus_leucogenys
ENSHCOG00000004655pabpn19971.245ENSODEG00000002083BCL2L2-PABPN16877.404Octodon_degus
ENSHCOG00000004655pabpn18673.399ENSODEG00000003739-8861.905Octodon_degus
ENSHCOG00000004655pabpn17671.508ENSODEG00000011555-8967.066Octodon_degus
ENSHCOG00000004655pabpn19598.636ENSONIG00000008112pabpn17798.636Oreochromis_niloticus
ENSHCOG00000004655pabpn16382.993ENSOANG00000009218-10078.082Ornithorhynchus_anatinus
ENSHCOG00000004655pabpn18681.068ENSOCUG00000016174PABPN19567.050Oryctolagus_cuniculus
ENSHCOG00000004655pabpn19997.380ENSORLG00000027900pabpn19794.737Oryzias_latipes
ENSHCOG00000004655pabpn19997.380ENSORLG00020004681pabpn17897.380Oryzias_latipes_hni
ENSHCOG00000004655pabpn110097.414ENSORLG00015000018pabpn110097.414Oryzias_latipes_hsok
ENSHCOG00000004655pabpn19597.727ENSOMEG00000016618pabpn18297.717Oryzias_melastigma
ENSHCOG00000004655pabpn18681.553ENSOGAG00000008710PABPN18667.300Otolemur_garnettii
ENSHCOG00000004655pabpn19971.674ENSOARG00000019336BCL2L2-PABPN16468.534Ovis_aries
ENSHCOG00000004655pabpn19971.674ENSPPAG00000028984BCL2L2-PABPN18783.562Pan_paniscus
ENSHCOG00000004655pabpn17166.867ENSPPAG00000039421-9363.636Pan_paniscus
ENSHCOG00000004655pabpn18681.553ENSPPRG00000010567PABPN18667.300Panthera_pardus
ENSHCOG00000004655pabpn17180.952ENSPTIG00000001063BCL2L2-PABPN19476.647Panthera_tigris_altaica
ENSHCOG00000004655pabpn110062.821ENSPTRG00000047273-9358.167Pan_troglodytes
ENSHCOG00000004655pabpn19975.107ENSPTRG00000006167BCL2L28472.414Pan_troglodytes
ENSHCOG00000004655pabpn18468.687ENSPANG00000023326-9970.213Papio_anubis
ENSHCOG00000004655pabpn19975.107ENSPANG00000021100BCL2L2-PABPN18472.414Papio_anubis
ENSHCOG00000004655pabpn17169.512ENSPKIG00000008340pabpn1l8468.023Paramormyrops_kingsleyae
ENSHCOG00000004655pabpn110090.987ENSPKIG00000018052pabpn110093.991Paramormyrops_kingsleyae
ENSHCOG00000004655pabpn19595.909ENSPKIG00000008144-7595.755Paramormyrops_kingsleyae
ENSHCOG00000004655pabpn15876.119ENSPSIG00000011959-8483.478Pelodiscus_sinensis
ENSHCOG00000004655pabpn19597.273ENSPMGG00000022027pabpn18197.273Periophthalmus_magnuspinnatus
ENSHCOG00000004655pabpn19972.103ENSPEMG00000008332Gm205218990.476Peromyscus_maniculatus_bairdii
ENSHCOG00000004655pabpn17976.344ENSPMAG00000006212pabpn19964.490Petromyzon_marinus
ENSHCOG00000004655pabpn18679.024ENSPCIG00000027751-8666.920Phascolarctos_cinereus
ENSHCOG00000004655pabpn110095.299ENSPFOG00000010351pabpn19995.299Poecilia_formosa
ENSHCOG00000004655pabpn19996.104ENSPLAG00000022696pabpn17996.104Poecilia_latipinna
ENSHCOG00000004655pabpn110095.299ENSPMEG00000020856pabpn110095.299Poecilia_mexicana
ENSHCOG00000004655pabpn110095.726ENSPREG00000011278pabpn110095.726Poecilia_reticulata
ENSHCOG00000004655pabpn18181.959ENSPPYG00000005663PABPN18670.661Pongo_abelii
ENSHCOG00000004655pabpn17969.271ENSPCAG00000005902PABPN18259.836Procavia_capensis
ENSHCOG00000004655pabpn19975.536ENSPCOG00000028047BCL2L2-PABPN18473.191Propithecus_coquereli
ENSHCOG00000004655pabpn18779.904ENSPVAG00000005270PABPN18667.176Pteropus_vampyrus
ENSHCOG00000004655pabpn110097.845ENSPNYG00000013182pabpn110097.845Pundamilia_nyererei
ENSHCOG00000004655pabpn18862.319ENSPNAG00000021666pabpn1l8469.591Pygocentrus_nattereri
ENSHCOG00000004655pabpn110097.414ENSPNAG00000023526pabpn110097.414Pygocentrus_nattereri
ENSHCOG00000004655pabpn18681.553ENSRNOG00000042195Pabpn18567.433Rattus_norvegicus
ENSHCOG00000004655pabpn18771.154ENSRBIG00000042811-9567.257Rhinopithecus_bieti
ENSHCOG00000004655pabpn18971.226ENSRBIG00000039547-8263.229Rhinopithecus_bieti
ENSHCOG00000004655pabpn19471.493ENSRBIG00000040762BCL2L2-PABPN16572.512Rhinopithecus_bieti
ENSHCOG00000004655pabpn19466.518ENSRROG00000040409-8263.677Rhinopithecus_roxellana
ENSHCOG00000004655pabpn19471.493ENSRROG00000045535BCL2L2-PABPN19476.647Rhinopithecus_roxellana
ENSHCOG00000004655pabpn18766.825ENSRROG00000036409-7061.504Rhinopithecus_roxellana
ENSHCOG00000004655pabpn19967.886ENSSBOG00000026930BCL2L2-PABPN18783.562Saimiri_boliviensis_boliviensis
ENSHCOG00000004655pabpn19961.765ENSSHAG00000007707-9959.072Sarcophilus_harrisii
ENSHCOG00000004655pabpn18180.423ENSSHAG00000014841-8778.836Sarcophilus_harrisii
ENSHCOG00000004655pabpn18063.784ENSSFOG00015015833pabpn1l7768.862Scleropages_formosus
ENSHCOG00000004655pabpn19589.593ENSSFOG00015012565pabpn110086.695Scleropages_formosus
ENSHCOG00000004655pabpn110090.517ENSSFOG00015014718pabpn110093.103Scleropages_formosus
ENSHCOG00000004655pabpn110097.414ENSSMAG00000020157pabpn110097.414Scophthalmus_maximus
ENSHCOG00000004655pabpn19997.817ENSSDUG00000020582pabpn17897.817Seriola_dumerili
ENSHCOG00000004655pabpn110097.845ENSSLDG00000007118pabpn110097.845Seriola_lalandi_dorsalis
ENSHCOG00000004655pabpn17178.443ENSSPUG00000018308-9478.443Sphenodon_punctatus
ENSHCOG00000004655pabpn110096.996ENSSPAG00000021658pabpn110096.996Stegastes_partitus
ENSHCOG00000004655pabpn19971.674ENSSSCG00000002023PABPN18667.300Sus_scrofa
ENSHCOG00000004655pabpn19262.963ENSSSCG00000034805-7958.095Sus_scrofa
ENSHCOG00000004655pabpn110096.983ENSTRUG00000023664pabpn110096.983Takifugu_rubripes
ENSHCOG00000004655pabpn19193.365ENSTNIG00000005369pabpn19893.365Tetraodon_nigroviridis
ENSHCOG00000004655pabpn18681.553ENSUAMG00000024460PABPN16877.885Ursus_americanus
ENSHCOG00000004655pabpn19971.674ENSUMAG00000014288BCL2L2-PABPN17068.534Ursus_maritimus
ENSHCOG00000004655pabpn19971.674ENSVVUG00000019912BCL2L2-PABPN17678.238Vulpes_vulpes
ENSHCOG00000004655pabpn18484.694ENSXETG00000014597pabpn17378.140Xenopus_tropicalis
ENSHCOG00000004655pabpn17481.714ENSXCOG00000005158pabpn18987.500Xiphophorus_couchianus
ENSHCOG00000004655pabpn110096.154ENSXMAG00000006196pabpn110096.154Xiphophorus_maculatus

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