EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000004764 (Gene tree)
Gene ID: 109529016
Gene Symbol: rad54b
Alias: im:7137737|im:7153525
Full Name: RAD54 homolog B
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 11738 bases
Position: chrKV880346.1:519267-531004
Accession: 109529016
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000003409	ResIII	PF04851.15	3.5e-10	1	1
ENSHCOP00000003379	ResIII	PF04851.15	8.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000008785	-	2652	XM_019892152	ENSHCOP00000003409	883 (aa)	XP_019747711	-
ENSHCOT00000008836	-	2382	-	ENSHCOP00000003379	794 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000004764's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000004764's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000004764	rad54b	66	30.280	ENSHCOG00000012787	chd1l	50	32.121

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000004764	rad54b	98	55.871	ENSG00000197275	RAD54B	99	52.524	Homo_sapiens
ENSHCOG00000004764	rad54b	90	55.481	ENSG00000265817	FSBP	99	56.772	Homo_sapiens
ENSHCOG00000004764	rad54b	99	55.060	ENSAMEG00000005834	-	99	53.139	Ailuropoda_melanoleuca
ENSHCOG00000004764	rad54b	98	76.712	ENSACIG00000013005	rad54b	99	73.889	Amphilophus_citrinellus
ENSHCOG00000004764	rad54b	98	77.503	ENSAOCG00000008523	rad54b	99	73.838	Amphiprion_ocellaris
ENSHCOG00000004764	rad54b	98	75.000	ENSAPEG00000001673	rad54b	99	71.254	Amphiprion_percula
ENSHCOG00000004764	rad54b	98	76.654	ENSATEG00000001527	rad54b	99	74.219	Anabas_testudineus
ENSHCOG00000004764	rad54b	98	58.744	ENSAPLG00000014366	-	99	55.699	Anas_platyrhynchos
ENSHCOG00000004764	rad54b	98	57.072	ENSACAG00000003671	-	99	58.531	Anolis_carolinensis
ENSHCOG00000004764	rad54b	80	56.692	ENSANAG00000019528	-	99	58.605	Aotus_nancymaae
ENSHCOG00000004764	rad54b	98	76.617	ENSACLG00000007826	rad54b	99	74.078	Astatotilapia_calliptera
ENSHCOG00000004764	rad54b	98	62.283	ENSAMXG00000039985	rad54b	94	65.173	Astyanax_mexicanus
ENSHCOG00000004764	rad54b	98	56.296	ENSBTAG00000000632	RAD54B	99	54.357	Bos_taurus
ENSHCOG00000004764	rad54b	91	34.115	WBGene00013792	Y116A8C.13	85	34.073	Caenorhabditis_elegans
ENSHCOG00000004764	rad54b	98	55.995	ENSCJAG00000000080	-	99	56.831	Callithrix_jacchus
ENSHCOG00000004764	rad54b	99	55.529	ENSCAFG00000009179	RAD54B	99	54.545	Canis_familiaris
ENSHCOG00000004764	rad54b	99	55.529	ENSCAFG00020012084	-	99	54.545	Canis_lupus_dingo
ENSHCOG00000004764	rad54b	98	56.420	ENSCHIG00000008230	-	99	54.466	Capra_hircus
ENSHCOG00000004764	rad54b	98	55.665	ENSTSYG00000013234	-	99	53.552	Carlito_syrichta
ENSHCOG00000004764	rad54b	98	56.034	ENSCPOG00000011643	-	99	53.685	Cavia_porcellus
ENSHCOG00000004764	rad54b	98	55.734	ENSCCAG00000011754	-	99	56.599	Cebus_capucinus
ENSHCOG00000004764	rad54b	98	55.748	ENSCATG00000030661	-	99	56.889	Cercocebus_atys
ENSHCOG00000004764	rad54b	99	55.247	ENSCLAG00000010476	-	99	53.667	Chinchilla_lanigera
ENSHCOG00000004764	rad54b	98	55.748	ENSCSAG00000012712	-	99	53.326	Chlorocebus_sabaeus
ENSHCOG00000004764	rad54b	98	58.765	ENSCPBG00000003204	-	99	56.643	Chrysemys_picta_bellii
ENSHCOG00000004764	rad54b	98	56.258	ENSCANG00000017939	-	99	57.319	Colobus_angolensis_palliatus
ENSHCOG00000004764	rad54b	100	53.863	ENSCGRG00001020184	Rad54b	99	53.863	Cricetulus_griseus_chok1gshd
ENSHCOG00000004764	rad54b	100	52.870	ENSCGRG00000016752	Rad54b	99	52.870	Cricetulus_griseus_crigri
ENSHCOG00000004764	rad54b	100	71.711	ENSCSEG00000001601	rad54b	99	72.210	Cynoglossus_semilaevis
ENSHCOG00000004764	rad54b	98	74.593	ENSCVAG00000009200	rad54b	99	71.826	Cyprinodon_variegatus
ENSHCOG00000004764	rad54b	90	84.615	ENSDARG00000092134	rad54b	99	66.562	Danio_rerio
ENSHCOG00000004764	rad54b	98	56.173	ENSDNOG00000015535	-	99	53.998	Dasypus_novemcinctus
ENSHCOG00000004764	rad54b	99	55.623	ENSDORG00000002492	Rad54b	99	54.235	Dipodomys_ordii
ENSHCOG00000004764	rad54b	88	58.659	ENSETEG00000010605	-	100	56.429	Echinops_telfairi
ENSHCOG00000004764	rad54b	98	47.102	ENSEBUG00000009104	rad54b	98	45.134	Eptatretus_burgeri
ENSHCOG00000004764	rad54b	98	55.351	ENSEASG00005004021	-	88	57.288	Equus_asinus_asinus
ENSHCOG00000004764	rad54b	98	55.720	ENSECAG00000021949	-	98	52.838	Equus_caballus
ENSHCOG00000004764	rad54b	81	50.993	ENSEEUG00000008056	-	71	52.941	Erinaceus_europaeus
ENSHCOG00000004764	rad54b	98	69.335	ENSELUG00000009287	rad54b	92	71.606	Esox_lucius
ENSHCOG00000004764	rad54b	98	56.404	ENSFCAG00000015513	-	99	58.207	Felis_catus
ENSHCOG00000004764	rad54b	98	58.148	ENSFALG00000005467	-	99	55.748	Ficedula_albicollis
ENSHCOG00000004764	rad54b	98	55.748	ENSFDAG00000020541	-	99	53.720	Fukomys_damarensis
ENSHCOG00000004764	rad54b	98	72.603	ENSFHEG00000014382	rad54b	88	76.366	Fundulus_heteroclitus
ENSHCOG00000004764	rad54b	97	74.074	ENSGMOG00000014774	rad54b	98	76.933	Gadus_morhua
ENSHCOG00000004764	rad54b	98	58.057	ENSGALG00000043597	RAD54B	99	54.856	Gallus_gallus
ENSHCOG00000004764	rad54b	98	74.629	ENSGAFG00000007901	rad54b	99	72.676	Gambusia_affinis
ENSHCOG00000004764	rad54b	98	76.238	ENSGACG00000009128	rad54b	100	72.688	Gasterosteus_aculeatus
ENSHCOG00000004764	rad54b	98	58.621	ENSGAGG00000018747	-	99	54.762	Gopherus_agassizii
ENSHCOG00000004764	rad54b	98	55.487	ENSGGOG00000023516	-	99	52.845	Gorilla_gorilla
ENSHCOG00000004764	rad54b	98	76.208	ENSHBUG00000016017	rad54b	99	72.258	Haplochromis_burtoni
ENSHCOG00000004764	rad54b	98	55.706	ENSHGLG00000008263	RAD54B	98	52.637	Heterocephalus_glaber_female
ENSHCOG00000004764	rad54b	98	54.933	ENSHGLG00100008108	-	98	51.872	Heterocephalus_glaber_male
ENSHCOG00000004764	rad54b	98	61.132	ENSIPUG00000018531	rad54b	99	58.466	Ictalurus_punctatus
ENSHCOG00000004764	rad54b	98	54.724	ENSSTOG00000010791	-	99	52.637	Ictidomys_tridecemlineatus
ENSHCOG00000004764	rad54b	98	55.583	ENSJJAG00000010314	Rad54b	99	53.005	Jaculus_jaculus
ENSHCOG00000004764	rad54b	100	69.907	ENSKMAG00000004744	rad54b	95	74.198	Kryptolebias_marmoratus
ENSHCOG00000004764	rad54b	93	60.026	ENSLACG00000000859	-	100	61.981	Latimeria_chalumnae
ENSHCOG00000004764	rad54b	99	63.736	ENSLOCG00000010100	rad54b	99	60.926	Lepisosteus_oculatus
ENSHCOG00000004764	rad54b	99	53.430	ENSLAFG00000015315	-	97	55.767	Loxodonta_africana
ENSHCOG00000004764	rad54b	98	55.748	ENSMFAG00000031629	-	99	56.889	Macaca_fascicularis
ENSHCOG00000004764	rad54b	98	55.748	ENSMMUG00000005659	-	99	53.326	Macaca_mulatta
ENSHCOG00000004764	rad54b	98	55.624	ENSMNEG00000016408	-	99	52.637	Macaca_nemestrina
ENSHCOG00000004764	rad54b	98	55.748	ENSMLEG00000006946	-	99	52.688	Mandrillus_leucophaeus
ENSHCOG00000004764	rad54b	98	75.436	ENSMAMG00000012269	rad54b	99	72.204	Mastacembelus_armatus
ENSHCOG00000004764	rad54b	98	76.617	ENSMZEG00005005281	rad54b	97	78.731	Maylandia_zebra
ENSHCOG00000004764	rad54b	98	57.934	ENSMGAG00000012024	-	99	54.292	Meleagris_gallopavo
ENSHCOG00000004764	rad54b	100	53.611	ENSMAUG00000013586	Rad54b	99	53.611	Mesocricetus_auratus
ENSHCOG00000004764	rad54b	98	56.049	ENSMICG00000000754	-	99	54.362	Microcebus_murinus
ENSHCOG00000004764	rad54b	98	55.062	ENSMOCG00000020035	Rad54b	99	53.311	Microtus_ochrogaster
ENSHCOG00000004764	rad54b	98	75.686	ENSMMOG00000003394	rad54b	99	72.291	Mola_mola
ENSHCOG00000004764	rad54b	98	55.720	ENSMODG00000007343	-	97	57.775	Monodelphis_domestica
ENSHCOG00000004764	rad54b	80	76.708	ENSMALG00000001520	rad54b	99	77.223	Monopterus_albus
ENSHCOG00000004764	rad54b	98	56.382	MGP_CAROLIEiJ_G0025810	Rad54b	99	54.656	Mus_caroli
ENSHCOG00000004764	rad54b	98	55.143	ENSMUSG00000078773	Rad54b	99	53.341	Mus_musculus
ENSHCOG00000004764	rad54b	98	55.831	MGP_PahariEiJ_G0023933	Rad54b	99	53.838	Mus_pahari
ENSHCOG00000004764	rad54b	98	55.762	MGP_SPRETEiJ_G0026758	Rad54b	99	53.786	Mus_spretus
ENSHCOG00000004764	rad54b	98	55.886	ENSMPUG00000008878	-	96	58.354	Mustela_putorius_furo
ENSHCOG00000004764	rad54b	98	56.227	ENSMLUG00000008953	-	99	53.210	Myotis_lucifugus
ENSHCOG00000004764	rad54b	98	55.092	ENSNGAG00000017537	Rad54b	99	52.723	Nannospalax_galili
ENSHCOG00000004764	rad54b	99	76.202	ENSNBRG00000013394	rad54b	99	74.190	Neolamprologus_brichardi
ENSHCOG00000004764	rad54b	98	55.240	ENSNLEG00000003062	-	99	56.071	Nomascus_leucogenys
ENSHCOG00000004764	rad54b	79	56.220	ENSMEUG00000012426	-	69	60.660	Notamacropus_eugenii
ENSHCOG00000004764	rad54b	87	66.667	ENSODEG00000002650	-	92	72.340	Octodon_degus
ENSHCOG00000004764	rad54b	98	55.679	ENSODEG00000019564	-	99	53.736	Octodon_degus
ENSHCOG00000004764	rad54b	98	76.332	ENSONIG00000006067	rad54b	99	72.905	Oreochromis_niloticus
ENSHCOG00000004764	rad54b	93	56.645	ENSOANG00000011348	-	99	58.411	Ornithorhynchus_anatinus
ENSHCOG00000004764	rad54b	98	55.734	ENSOCUG00000016478	-	99	52.541	Oryctolagus_cuniculus
ENSHCOG00000004764	rad54b	98	73.886	ENSORLG00000008918	rad54b	99	79.471	Oryzias_latipes
ENSHCOG00000004764	rad54b	80	75.566	ENSORLG00020012171	rad54b	99	79.471	Oryzias_latipes_hni
ENSHCOG00000004764	rad54b	98	73.424	ENSORLG00015018536	rad54b	99	69.083	Oryzias_latipes_hsok
ENSHCOG00000004764	rad54b	96	73.885	ENSOMEG00000004345	rad54b	99	76.333	Oryzias_melastigma
ENSHCOG00000004764	rad54b	98	55.624	ENSOGAG00000007854	-	99	52.992	Otolemur_garnettii
ENSHCOG00000004764	rad54b	98	55.720	ENSOARG00000007691	-	97	57.557	Ovis_aries
ENSHCOG00000004764	rad54b	98	54.007	ENSPPAG00000029572	-	99	50.911	Pan_paniscus
ENSHCOG00000004764	rad54b	98	56.404	ENSPPRG00000007571	-	99	58.069	Panthera_pardus
ENSHCOG00000004764	rad54b	90	56.192	ENSPTIG00000012670	-	99	58.207	Panthera_tigris_altaica
ENSHCOG00000004764	rad54b	98	55.364	ENSPTRG00000020427	-	99	56.207	Pan_troglodytes
ENSHCOG00000004764	rad54b	98	55.748	ENSPANG00000019566	-	99	53.326	Papio_anubis
ENSHCOG00000004764	rad54b	98	63.748	ENSPKIG00000014974	rad54b	99	60.973	Paramormyrops_kingsleyae
ENSHCOG00000004764	rad54b	98	58.200	ENSPSIG00000002383	-	97	59.476	Pelodiscus_sinensis
ENSHCOG00000004764	rad54b	100	53.260	ENSPEMG00000012133	Rad54b	99	53.260	Peromyscus_maniculatus_bairdii
ENSHCOG00000004764	rad54b	98	54.712	ENSPMAG00000002916	rad54b	98	56.549	Petromyzon_marinus
ENSHCOG00000004764	rad54b	99	56.597	ENSPCIG00000020151	-	92	58.629	Phascolarctos_cinereus
ENSHCOG00000004764	rad54b	98	74.629	ENSPFOG00000023411	rad54b	99	70.374	Poecilia_formosa
ENSHCOG00000004764	rad54b	98	74.505	ENSPLAG00000010430	rad54b	99	70.267	Poecilia_latipinna
ENSHCOG00000004764	rad54b	98	74.629	ENSPMEG00000016873	rad54b	99	72.038	Poecilia_mexicana
ENSHCOG00000004764	rad54b	98	75.031	ENSPREG00000018443	rad54b	99	71.429	Poecilia_reticulata
ENSHCOG00000004764	rad54b	98	55.419	ENSPPYG00000018750	-	99	52.197	Pongo_abelii
ENSHCOG00000004764	rad54b	98	56.104	ENSPCOG00000026845	-	99	57.143	Propithecus_coquereli
ENSHCOG00000004764	rad54b	92	53.977	ENSPVAG00000000261	-	85	55.601	Pteropus_vampyrus
ENSHCOG00000004764	rad54b	98	76.000	ENSPNYG00000018303	rad54b	97	78.113	Pundamilia_nyererei
ENSHCOG00000004764	rad54b	99	61.333	ENSPNAG00000000295	rad54b	99	60.242	Pygocentrus_nattereri
ENSHCOG00000004764	rad54b	100	53.583	ENSRNOG00000039949	Rad54b	99	53.583	Rattus_norvegicus
ENSHCOG00000004764	rad54b	98	55.748	ENSRBIG00000020419	-	99	52.688	Rhinopithecus_bieti
ENSHCOG00000004764	rad54b	98	55.624	ENSRROG00000039897	-	99	52.581	Rhinopithecus_roxellana
ENSHCOG00000004764	rad54b	94	35.407	YBR073W	RDH54	81	37.391	Saccharomyces_cerevisiae
ENSHCOG00000004764	rad54b	98	55.817	ENSSBOG00000028501	-	99	52.366	Saimiri_boliviensis_boliviensis
ENSHCOG00000004764	rad54b	98	56.388	ENSSHAG00000017038	-	99	54.270	Sarcophilus_harrisii
ENSHCOG00000004764	rad54b	74	65.821	ENSSFOG00015008483	rad54b	90	69.312	Scleropages_formosus
ENSHCOG00000004764	rad54b	98	75.896	ENSSMAG00000018659	rad54b	99	74.270	Scophthalmus_maximus
ENSHCOG00000004764	rad54b	95	76.874	ENSSDUG00000001122	rad54b	86	79.740	Seriola_dumerili
ENSHCOG00000004764	rad54b	98	77.104	ENSSLDG00000013787	rad54b	99	72.129	Seriola_lalandi_dorsalis
ENSHCOG00000004764	rad54b	100	56.119	ENSSPUG00000016497	-	99	56.119	Sphenodon_punctatus
ENSHCOG00000004764	rad54b	98	76.733	ENSSPAG00000012800	rad54b	99	74.473	Stegastes_partitus
ENSHCOG00000004764	rad54b	98	56.227	ENSSSCG00000006101	-	97	58.175	Sus_scrofa
ENSHCOG00000004764	rad54b	98	57.791	ENSTGUG00000011880	-	100	55.328	Taeniopygia_guttata
ENSHCOG00000004764	rad54b	99	73.710	ENSTRUG00000010015	rad54b	89	77.078	Takifugu_rubripes
ENSHCOG00000004764	rad54b	98	52.774	ENSTTRG00000006312	-	99	50.605	Tursiops_truncatus
ENSHCOG00000004764	rad54b	99	54.819	ENSUMAG00000016401	-	99	52.922	Ursus_maritimus
ENSHCOG00000004764	rad54b	98	56.242	ENSVPAG00000003157	-	99	53.821	Vicugna_pacos
ENSHCOG00000004764	rad54b	100	47.735	ENSXETG00000025924	rad54b	99	50.250	Xenopus_tropicalis
ENSHCOG00000004764	rad54b	98	74.688	ENSXMAG00000013141	rad54b	99	72.676	Xiphophorus_maculatus