EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000005037 (Gene tree)
Gene ID: 109532674
Gene Symbol: lsm8
Alias: -
Full Name: LSM8 homolog%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 1077 bases
Position: chrKV880455.1:655132-656208
Accession: 109532674
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000003667	LSM	PF01423.22	2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000008355	-	617	XM_019897648	ENSHCOP00000003667	96 (aa)	XP_019753207	UPI00094ECCE6

Gene Model

Click here to download ENSHCOG00000005037's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005037's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000005037	lsm8	76	34.247	ENSHCOG00000017233	lsm1	54	34.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005037	lsm8	100	91.667	ENSG00000128534	LSM8	100	96.000	Homo_sapiens
ENSHCOG00000005037	lsm8	100	98.958	ENSAPOG00000008649	lsm8	100	98.958	Acanthochromis_polyacanthus
ENSHCOG00000005037	lsm8	100	91.667	ENSAMEG00000001162	LSM8	100	91.667	Ailuropoda_melanoleuca
ENSHCOG00000005037	lsm8	78	98.667	ENSACIG00000014694	lsm8	100	98.667	Amphilophus_citrinellus
ENSHCOG00000005037	lsm8	100	98.958	ENSAOCG00000013926	lsm8	100	98.958	Amphiprion_ocellaris
ENSHCOG00000005037	lsm8	100	98.958	ENSAPEG00000023502	lsm8	100	98.958	Amphiprion_percula
ENSHCOG00000005037	lsm8	78	98.667	ENSATEG00000023432	lsm8	100	98.667	Anabas_testudineus
ENSHCOG00000005037	lsm8	100	84.848	ENSAPLG00000005115	LSM8	100	84.848	Anas_platyrhynchos
ENSHCOG00000005037	lsm8	100	91.667	ENSANAG00000027771	LSM8	100	93.243	Aotus_nancymaae
ENSHCOG00000005037	lsm8	100	98.958	ENSACLG00000011253	lsm8	100	98.958	Astatotilapia_calliptera
ENSHCOG00000005037	lsm8	100	96.875	ENSAMXG00000042902	lsm8	100	96.875	Astyanax_mexicanus
ENSHCOG00000005037	lsm8	100	91.667	ENSBTAG00000012649	LSM8	100	91.667	Bos_taurus
ENSHCOG00000005037	lsm8	98	56.383	WBGene00003082	lsm-8	96	56.383	Caenorhabditis_elegans
ENSHCOG00000005037	lsm8	100	91.667	ENSCJAG00000046406	LSM8	100	93.243	Callithrix_jacchus
ENSHCOG00000005037	lsm8	98	92.553	ENSCAFG00000016459	LSM8	95	92.553	Canis_familiaris
ENSHCOG00000005037	lsm8	100	91.667	ENSCAFG00020007643	-	100	91.667	Canis_lupus_dingo
ENSHCOG00000005037	lsm8	89	90.588	ENSCAFG00020012800	-	66	90.588	Canis_lupus_dingo
ENSHCOG00000005037	lsm8	89	94.118	ENSCHIG00000014201	LSM8	90	94.118	Capra_hircus
ENSHCOG00000005037	lsm8	100	91.667	ENSTSYG00000032434	LSM8	100	91.667	Carlito_syrichta
ENSHCOG00000005037	lsm8	77	94.595	ENSCAPG00000008253	LSM8	100	94.595	Cavia_aperea
ENSHCOG00000005037	lsm8	100	91.667	ENSCPOG00000035673	LSM8	100	91.667	Cavia_porcellus
ENSHCOG00000005037	lsm8	100	91.667	ENSCCAG00000021329	LSM8	100	93.243	Cebus_capucinus
ENSHCOG00000005037	lsm8	100	91.667	ENSCATG00000045302	LSM8	100	93.243	Cercocebus_atys
ENSHCOG00000005037	lsm8	100	91.667	ENSCLAG00000003726	LSM8	100	91.667	Chinchilla_lanigera
ENSHCOG00000005037	lsm8	100	88.542	ENSCSAG00000019007	-	100	88.542	Chlorocebus_sabaeus
ENSHCOG00000005037	lsm8	100	91.667	ENSCSAG00000010802	-	100	91.667	Chlorocebus_sabaeus
ENSHCOG00000005037	lsm8	89	94.118	ENSCPBG00000008154	LSM8	87	94.118	Chrysemys_picta_bellii
ENSHCOG00000005037	lsm8	100	73.958	ENSCING00000024877	-	100	73.958	Ciona_intestinalis
ENSHCOG00000005037	lsm8	100	91.667	ENSCANG00000040728	LSM8	100	93.243	Colobus_angolensis_palliatus
ENSHCOG00000005037	lsm8	100	91.667	ENSCGRG00001000450	Lsm8	100	91.667	Cricetulus_griseus_chok1gshd
ENSHCOG00000005037	lsm8	89	94.118	ENSCGRG00000005587	Lsm8	100	94.118	Cricetulus_griseus_crigri
ENSHCOG00000005037	lsm8	100	84.375	ENSCSEG00000004164	lsm8	100	84.375	Cynoglossus_semilaevis
ENSHCOG00000005037	lsm8	100	98.958	ENSCVAG00000020547	lsm8	100	98.958	Cyprinodon_variegatus
ENSHCOG00000005037	lsm8	100	95.833	ENSDARG00000091656	lsm8	100	95.833	Danio_rerio
ENSHCOG00000005037	lsm8	100	91.667	ENSDNOG00000034613	LSM8	100	91.667	Dasypus_novemcinctus
ENSHCOG00000005037	lsm8	100	91.667	ENSDORG00000027868	Lsm8	100	91.667	Dipodomys_ordii
ENSHCOG00000005037	lsm8	98	70.213	FBgn0035271	CG2021	99	70.213	Drosophila_melanogaster
ENSHCOG00000005037	lsm8	100	92.708	ENSETEG00000011594	LSM8	100	92.708	Echinops_telfairi
ENSHCOG00000005037	lsm8	77	91.892	ENSEBUG00000012017	lsm8	100	91.892	Eptatretus_burgeri
ENSHCOG00000005037	lsm8	100	91.667	ENSEASG00005008932	LSM8	62	91.667	Equus_asinus_asinus
ENSHCOG00000005037	lsm8	89	94.118	ENSECAG00000024025	LSM8	77	94.118	Equus_caballus
ENSHCOG00000005037	lsm8	100	94.792	ENSELUG00000010138	lsm8	100	94.792	Esox_lucius
ENSHCOG00000005037	lsm8	100	91.667	ENSFCAG00000036620	-	100	91.667	Felis_catus
ENSHCOG00000005037	lsm8	84	72.840	ENSFCAG00000044794	-	82	72.840	Felis_catus
ENSHCOG00000005037	lsm8	100	92.708	ENSFALG00000010023	LSM8	100	92.708	Ficedula_albicollis
ENSHCOG00000005037	lsm8	100	91.667	ENSFDAG00000019530	LSM8	100	91.667	Fukomys_damarensis
ENSHCOG00000005037	lsm8	100	98.958	ENSFHEG00000013729	lsm8	100	98.958	Fundulus_heteroclitus
ENSHCOG00000005037	lsm8	100	92.708	ENSGALG00000009110	LSM8	100	92.708	Gallus_gallus
ENSHCOG00000005037	lsm8	100	98.958	ENSGAFG00000001135	lsm8	100	98.958	Gambusia_affinis
ENSHCOG00000005037	lsm8	100	91.667	ENSGAGG00000017366	LSM8	100	91.667	Gopherus_agassizii
ENSHCOG00000005037	lsm8	100	91.667	ENSGGOG00000041883	LSM8	100	91.667	Gorilla_gorilla
ENSHCOG00000005037	lsm8	100	98.958	ENSHBUG00000003646	lsm8	100	98.958	Haplochromis_burtoni
ENSHCOG00000005037	lsm8	71	91.176	ENSHGLG00000001988	-	99	91.176	Heterocephalus_glaber_female
ENSHCOG00000005037	lsm8	100	85.417	ENSHGLG00000019782	-	100	85.417	Heterocephalus_glaber_female
ENSHCOG00000005037	lsm8	100	87.500	ENSHGLG00100012166	-	100	87.500	Heterocephalus_glaber_male
ENSHCOG00000005037	lsm8	98	90.426	ENSHGLG00100003934	-	94	90.426	Heterocephalus_glaber_male
ENSHCOG00000005037	lsm8	100	96.875	ENSIPUG00000019811	NAA38	100	96.875	Ictalurus_punctatus
ENSHCOG00000005037	lsm8	100	91.667	ENSSTOG00000009039	LSM8	100	91.667	Ictidomys_tridecemlineatus
ENSHCOG00000005037	lsm8	92	81.818	ENSSTOG00000034801	-	81	81.818	Ictidomys_tridecemlineatus
ENSHCOG00000005037	lsm8	100	91.667	ENSJJAG00000009031	Lsm8	99	91.667	Jaculus_jaculus
ENSHCOG00000005037	lsm8	100	98.958	ENSKMAG00000018983	lsm8	100	98.958	Kryptolebias_marmoratus
ENSHCOG00000005037	lsm8	100	93.750	ENSLACG00000010231	LSM8	100	93.750	Latimeria_chalumnae
ENSHCOG00000005037	lsm8	100	96.875	ENSLOCG00000015580	lsm8	100	96.875	Lepisosteus_oculatus
ENSHCOG00000005037	lsm8	100	90.722	ENSLAFG00000011242	LSM8	100	90.722	Loxodonta_africana
ENSHCOG00000005037	lsm8	100	91.667	ENSMFAG00000035798	LSM8	100	93.243	Macaca_fascicularis
ENSHCOG00000005037	lsm8	100	88.542	ENSMFAG00000013044	-	100	88.542	Macaca_fascicularis
ENSHCOG00000005037	lsm8	100	91.667	ENSMMUG00000046401	LSM8	100	93.243	Macaca_mulatta
ENSHCOG00000005037	lsm8	100	91.667	ENSMNEG00000036764	-	100	93.243	Macaca_nemestrina
ENSHCOG00000005037	lsm8	78	93.333	ENSMNEG00000011141	-	100	93.333	Macaca_nemestrina
ENSHCOG00000005037	lsm8	100	91.667	ENSMLEG00000035828	-	100	93.243	Mandrillus_leucophaeus
ENSHCOG00000005037	lsm8	100	78.125	ENSMLEG00000039324	-	100	78.125	Mandrillus_leucophaeus
ENSHCOG00000005037	lsm8	78	98.667	ENSMAMG00000018839	lsm8	100	98.667	Mastacembelus_armatus
ENSHCOG00000005037	lsm8	100	98.958	ENSMZEG00005019138	lsm8	100	98.958	Maylandia_zebra
ENSHCOG00000005037	lsm8	100	92.708	ENSMGAG00000008808	LSM8	100	92.708	Meleagris_gallopavo
ENSHCOG00000005037	lsm8	100	73.958	ENSMAUG00000015356	-	100	73.958	Mesocricetus_auratus
ENSHCOG00000005037	lsm8	75	88.889	ENSMAUG00000020287	-	100	86.486	Mesocricetus_auratus
ENSHCOG00000005037	lsm8	100	85.417	ENSMAUG00000015721	-	100	85.417	Mesocricetus_auratus
ENSHCOG00000005037	lsm8	100	91.667	ENSMICG00000042730	LSM8	100	91.667	Microcebus_murinus
ENSHCOG00000005037	lsm8	100	91.667	ENSMOCG00000001688	Lsm8	100	91.667	Microtus_ochrogaster
ENSHCOG00000005037	lsm8	78	98.667	ENSMMOG00000006046	lsm8	100	98.667	Mola_mola
ENSHCOG00000005037	lsm8	76	84.000	ENSMODG00000015729	LSM8	96	84.000	Monodelphis_domestica
ENSHCOG00000005037	lsm8	100	97.917	ENSMALG00000000405	lsm8	100	97.917	Monopterus_albus
ENSHCOG00000005037	lsm8	100	91.667	MGP_CAROLIEiJ_G0028125	-	100	91.667	Mus_caroli
ENSHCOG00000005037	lsm8	100	91.667	ENSMUSG00000044155	Lsm8	100	91.667	Mus_musculus
ENSHCOG00000005037	lsm8	100	91.667	MGP_PahariEiJ_G0021881	Lsm8	100	96.000	Mus_pahari
ENSHCOG00000005037	lsm8	100	91.667	MGP_SPRETEiJ_G0029125	-	100	91.667	Mus_spretus
ENSHCOG00000005037	lsm8	100	90.625	ENSMLUG00000027762	-	100	90.625	Myotis_lucifugus
ENSHCOG00000005037	lsm8	100	91.667	ENSMLUG00000006837	-	100	91.667	Myotis_lucifugus
ENSHCOG00000005037	lsm8	100	91.667	ENSNGAG00000016554	Lsm8	100	91.667	Nannospalax_galili
ENSHCOG00000005037	lsm8	100	98.958	ENSNBRG00000014441	lsm8	100	98.958	Neolamprologus_brichardi
ENSHCOG00000005037	lsm8	100	91.667	ENSNLEG00000011768	LSM8	100	91.667	Nomascus_leucogenys
ENSHCOG00000005037	lsm8	100	80.208	ENSMEUG00000007801	LSM8	100	80.208	Notamacropus_eugenii
ENSHCOG00000005037	lsm8	89	94.118	ENSOPRG00000014809	LSM8	100	94.118	Ochotona_princeps
ENSHCOG00000005037	lsm8	100	91.667	ENSODEG00000000418	-	100	91.667	Octodon_degus
ENSHCOG00000005037	lsm8	90	74.419	ENSODEG00000020290	-	100	74.419	Octodon_degus
ENSHCOG00000005037	lsm8	100	90.625	ENSOANG00000014536	LSM8	100	90.625	Ornithorhynchus_anatinus
ENSHCOG00000005037	lsm8	100	90.722	ENSOCUG00000017359	LSM8	100	90.722	Oryctolagus_cuniculus
ENSHCOG00000005037	lsm8	100	86.458	ENSORLG00000017432	lsm8	100	86.458	Oryzias_latipes
ENSHCOG00000005037	lsm8	100	86.458	ENSORLG00020004376	lsm8	100	86.458	Oryzias_latipes_hni
ENSHCOG00000005037	lsm8	100	98.958	ENSORLG00015003757	lsm8	100	98.958	Oryzias_latipes_hsok
ENSHCOG00000005037	lsm8	100	85.417	ENSOMEG00000022509	lsm8	100	85.417	Oryzias_melastigma
ENSHCOG00000005037	lsm8	100	91.667	ENSOGAG00000013377	LSM8	100	91.667	Otolemur_garnettii
ENSHCOG00000005037	lsm8	100	91.667	ENSOARG00000017974	LSM8	100	91.667	Ovis_aries
ENSHCOG00000005037	lsm8	78	96.000	ENSPPAG00000043228	-	100	96.000	Pan_paniscus
ENSHCOG00000005037	lsm8	100	91.667	ENSPPRG00000006444	LSM8	100	91.667	Panthera_pardus
ENSHCOG00000005037	lsm8	100	91.667	ENSPTIG00000004722	LSM8	100	91.667	Panthera_tigris_altaica
ENSHCOG00000005037	lsm8	78	96.000	ENSPTRG00000046596	-	100	96.000	Pan_troglodytes
ENSHCOG00000005037	lsm8	100	86.458	ENSPANG00000019395	-	100	86.458	Papio_anubis
ENSHCOG00000005037	lsm8	100	91.667	ENSPANG00000035470	-	100	93.243	Papio_anubis
ENSHCOG00000005037	lsm8	89	95.294	ENSPKIG00000006092	lsm8	86	95.294	Paramormyrops_kingsleyae
ENSHCOG00000005037	lsm8	78	96.000	ENSPSIG00000017054	LSM8	100	96.000	Pelodiscus_sinensis
ENSHCOG00000005037	lsm8	78	98.667	ENSPMGG00000016442	lsm8	100	98.667	Periophthalmus_magnuspinnatus
ENSHCOG00000005037	lsm8	77	93.243	ENSPEMG00000009153	Lsm8	100	93.243	Peromyscus_maniculatus_bairdii
ENSHCOG00000005037	lsm8	97	92.473	ENSPCIG00000021467	LSM8	98	92.473	Phascolarctos_cinereus
ENSHCOG00000005037	lsm8	100	98.958	ENSPFOG00000012340	lsm8	100	98.958	Poecilia_formosa
ENSHCOG00000005037	lsm8	100	89.583	ENSPLAG00000000516	lsm8	100	89.583	Poecilia_latipinna
ENSHCOG00000005037	lsm8	100	98.958	ENSPMEG00000022567	lsm8	100	98.958	Poecilia_mexicana
ENSHCOG00000005037	lsm8	76	87.500	ENSPREG00000005527	lsm8	72	87.500	Poecilia_reticulata
ENSHCOG00000005037	lsm8	100	91.667	ENSPPYG00000017942	LSM8	100	91.667	Pongo_abelii
ENSHCOG00000005037	lsm8	100	91.667	ENSPCOG00000003309	-	100	91.667	Propithecus_coquereli
ENSHCOG00000005037	lsm8	97	72.043	ENSPCOG00000017982	-	97	72.043	Propithecus_coquereli
ENSHCOG00000005037	lsm8	89	92.941	ENSPVAG00000000990	LSM8	100	92.941	Pteropus_vampyrus
ENSHCOG00000005037	lsm8	100	98.958	ENSPNYG00000011448	lsm8	100	98.958	Pundamilia_nyererei
ENSHCOG00000005037	lsm8	100	96.875	ENSPNAG00000010252	lsm8	100	96.875	Pygocentrus_nattereri
ENSHCOG00000005037	lsm8	100	91.667	ENSRNOG00000058677	Lsm8	100	91.667	Rattus_norvegicus
ENSHCOG00000005037	lsm8	100	91.667	ENSRBIG00000032851	LSM8	100	93.243	Rhinopithecus_bieti
ENSHCOG00000005037	lsm8	100	91.667	ENSRROG00000039618	LSM8	100	93.243	Rhinopithecus_roxellana
ENSHCOG00000005037	lsm8	100	91.667	ENSSBOG00000023223	LSM8	100	93.243	Saimiri_boliviensis_boliviensis
ENSHCOG00000005037	lsm8	100	91.667	ENSSHAG00000018435	-	100	91.667	Sarcophilus_harrisii
ENSHCOG00000005037	lsm8	100	96.875	ENSSFOG00015004412	lsm8	100	96.875	Scleropages_formosus
ENSHCOG00000005037	lsm8	78	96.000	ENSSMAG00000009458	lsm8	100	96.000	Scophthalmus_maximus
ENSHCOG00000005037	lsm8	100	98.958	ENSSDUG00000014702	lsm8	100	98.958	Seriola_dumerili
ENSHCOG00000005037	lsm8	78	98.667	ENSSLDG00000016870	lsm8	100	98.667	Seriola_lalandi_dorsalis
ENSHCOG00000005037	lsm8	75	95.833	ENSSARG00000009628	-	100	95.833	Sorex_araneus
ENSHCOG00000005037	lsm8	100	91.667	ENSSPUG00000017419	LSM8	100	91.667	Sphenodon_punctatus
ENSHCOG00000005037	lsm8	100	98.958	ENSSPAG00000021422	lsm8	100	98.958	Stegastes_partitus
ENSHCOG00000005037	lsm8	100	91.667	ENSSSCG00000021652	LSM8	100	91.667	Sus_scrofa
ENSHCOG00000005037	lsm8	100	92.708	ENSTGUG00000004730	-	100	92.708	Taeniopygia_guttata
ENSHCOG00000005037	lsm8	100	91.667	ENSTGUG00000016823	-	100	91.667	Taeniopygia_guttata
ENSHCOG00000005037	lsm8	100	98.958	ENSTRUG00000025192	lsm8	100	98.958	Takifugu_rubripes
ENSHCOG00000005037	lsm8	100	98.958	ENSTNIG00000002864	lsm8	100	98.958	Tetraodon_nigroviridis
ENSHCOG00000005037	lsm8	100	91.667	ENSTTRG00000001023	LSM8	100	91.667	Tursiops_truncatus
ENSHCOG00000005037	lsm8	92	90.909	ENSUAMG00000006943	-	92	90.909	Ursus_americanus
ENSHCOG00000005037	lsm8	92	90.909	ENSUMAG00000003073	LSM8	94	90.909	Ursus_maritimus
ENSHCOG00000005037	lsm8	100	91.667	ENSVPAG00000001530	LSM8	100	91.667	Vicugna_pacos
ENSHCOG00000005037	lsm8	78	93.333	ENSVVUG00000013248	-	82	93.333	Vulpes_vulpes
ENSHCOG00000005037	lsm8	93	93.258	ENSXETG00000021829	lsm8	92	93.258	Xenopus_tropicalis
ENSHCOG00000005037	lsm8	100	96.875	ENSXCOG00000012938	lsm8	100	96.875	Xiphophorus_couchianus
ENSHCOG00000005037	lsm8	100	98.958	ENSXMAG00000025919	lsm8	100	98.958	Xiphophorus_maculatus