EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000005149 (Gene tree)
Gene ID: -
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 10290 bases
Position: chrKV880048.1:468300-478589
Accession: 109518389
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	1	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	2	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	3	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	4	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	5	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	6	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	7	8
ENSHCOP00000019643	PUF	PF00806.19	4.9e-71	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000008222	-	3111	XM_019874200	ENSHCOP00000019643	1036 (aa)	XP_019729759	-

Gene Model

Click here to download ENSHCOG00000005149's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005149's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000005149	pum1	100	62.833	ENSHCOG00000010119	pum2	56	72.137

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005149	pum1	100	75.301	ENSG00000134644	PUM1	100	78.439	Homo_sapiens
ENSHCOG00000005149	pum1	100	89.400	ENSAPOG00000021632	pum1	92	90.713	Acanthochromis_polyacanthus
ENSHCOG00000005149	pum1	100	75.254	ENSAMEG00000017656	PUM1	87	75.139	Ailuropoda_melanoleuca
ENSHCOG00000005149	pum1	100	89.464	ENSACIG00000021013	pum1	92	90.499	Amphilophus_citrinellus
ENSHCOG00000005149	pum1	100	89.400	ENSAOCG00000003944	pum1	92	90.713	Amphiprion_ocellaris
ENSHCOG00000005149	pum1	100	89.400	ENSAPEG00000014550	pum1	92	90.713	Amphiprion_percula
ENSHCOG00000005149	pum1	100	89.118	ENSATEG00000016004	pum1	92	90.525	Anabas_testudineus
ENSHCOG00000005149	pum1	100	75.856	ENSAPLG00000009351	PUM1	90	75.578	Anas_platyrhynchos
ENSHCOG00000005149	pum1	100	75.348	ENSACAG00000000682	PUM1	88	74.421	Anolis_carolinensis
ENSHCOG00000005149	pum1	100	89.202	ENSACLG00000019354	pum1	100	90.516	Astatotilapia_calliptera
ENSHCOG00000005149	pum1	100	75.046	ENSCAFG00020024616	PUM1	95	79.110	Canis_lupus_dingo
ENSHCOG00000005149	pum1	90	83.149	ENSTSYG00000008868	PUM1	90	75.116	Carlito_syrichta
ENSHCOG00000005149	pum1	100	74.954	ENSCPOG00000031613	PUM1	90	74.838	Cavia_porcellus
ENSHCOG00000005149	pum1	90	93.923	ENSCATG00000017991	PUM1	77	93.923	Cercocebus_atys
ENSHCOG00000005149	pum1	100	72.710	ENSCLAG00000007662	PUM1	90	74.838	Chinchilla_lanigera
ENSHCOG00000005149	pum1	89	67.526	ENSCHOG00000010245	PUM1	78	66.495	Choloepus_hoffmanni
ENSHCOG00000005149	pum1	100	75.185	ENSCPBG00000009288	PUM1	99	74.373	Chrysemys_picta_bellii
ENSHCOG00000005149	pum1	100	75.301	ENSCANG00000042606	PUM1	85	78.863	Colobus_angolensis_palliatus
ENSHCOG00000005149	pum1	100	75.093	ENSCGRG00001024949	Pum1	90	74.977	Cricetulus_griseus_chok1gshd
ENSHCOG00000005149	pum1	100	75.093	ENSCGRG00000014197	Pum1	90	74.977	Cricetulus_griseus_crigri
ENSHCOG00000005149	pum1	100	88.075	ENSCSEG00000015981	pum1	100	89.202	Cynoglossus_semilaevis
ENSHCOG00000005149	pum1	100	88.649	ENSCVAG00000007043	pum1	92	89.962	Cyprinodon_variegatus
ENSHCOG00000005149	pum1	100	75.139	ENSDNOG00000010939	PUM1	90	75.116	Dasypus_novemcinctus
ENSHCOG00000005149	pum1	98	68.979	ENSETEG00000004355	PUM1	87	69.817	Echinops_telfairi
ENSHCOG00000005149	pum1	100	71.959	ENSECAG00000021369	PUM1	90	75.116	Equus_caballus
ENSHCOG00000005149	pum1	67	93.646	ENSEEUG00000003871	PUM1	64	83.742	Erinaceus_europaeus
ENSHCOG00000005149	pum1	100	83.955	ENSELUG00000002409	pum1	92	83.738	Esox_lucius
ENSHCOG00000005149	pum1	100	75.138	ENSFALG00000001214	PUM1	87	74.954	Ficedula_albicollis
ENSHCOG00000005149	pum1	100	75.046	ENSFDAG00000011319	PUM1	90	74.838	Fukomys_damarensis
ENSHCOG00000005149	pum1	96	82.863	ENSGALG00000042598	PUM1	88	84.073	Gallus_gallus
ENSHCOG00000005149	pum1	100	89.024	ENSGAFG00000015617	pum1	92	90.338	Gambusia_affinis
ENSHCOG00000005149	pum1	100	89.493	ENSGACG00000005717	pum1	92	88.837	Gasterosteus_aculeatus
ENSHCOG00000005149	pum1	96	83.065	ENSGAGG00000001290	PUM1	88	84.274	Gopherus_agassizii
ENSHCOG00000005149	pum1	100	89.118	ENSHBUG00000018718	pum1	92	90.432	Haplochromis_burtoni
ENSHCOG00000005149	pum1	100	78.273	ENSIPUG00000020421	pum1	91	78.366	Ictalurus_punctatus
ENSHCOG00000005149	pum1	100	88.555	ENSKMAG00000003481	pum1	92	89.869	Kryptolebias_marmoratus
ENSHCOG00000005149	pum1	100	89.587	ENSLBEG00000002527	pum1	92	88.837	Labrus_bergylta
ENSHCOG00000005149	pum1	100	73.869	ENSLACG00000017188	PUM1	89	71.719	Latimeria_chalumnae
ENSHCOG00000005149	pum1	100	80.409	ENSLOCG00000005210	pum1	89	78.273	Lepisosteus_oculatus
ENSHCOG00000005149	pum1	100	74.468	ENSLAFG00000003178	PUM1	90	75.093	Loxodonta_africana
ENSHCOG00000005149	pum1	100	75.301	ENSMNEG00000034639	PUM1	90	75.185	Macaca_nemestrina
ENSHCOG00000005149	pum1	100	74.535	ENSMLEG00000038743	PUM1	89	75.185	Mandrillus_leucophaeus
ENSHCOG00000005149	pum1	100	88.743	ENSMAMG00000011606	pum1	100	85.634	Mastacembelus_armatus
ENSHCOG00000005149	pum1	100	89.118	ENSMZEG00005005834	pum1	92	90.432	Maylandia_zebra
ENSHCOG00000005149	pum1	100	76.019	ENSMGAG00000000724	PUM1	90	75.741	Meleagris_gallopavo
ENSHCOG00000005149	pum1	100	98.066	ENSMMOG00000019817	pum1	51	98.333	Mola_mola
ENSHCOG00000005149	pum1	100	74.977	ENSMODG00000017067	PUM1	89	75.162	Monodelphis_domestica
ENSHCOG00000005149	pum1	100	74.468	MGP_CAROLIEiJ_G0026549	Pum1	90	74.630	Mus_caroli
ENSHCOG00000005149	pum1	100	74.468	ENSMUSG00000028580	Pum1	90	74.630	Mus_musculus
ENSHCOG00000005149	pum1	100	74.376	MGP_PahariEiJ_G0028881	Pum1	90	74.537	Mus_pahari
ENSHCOG00000005149	pum1	100	74.468	MGP_SPRETEiJ_G0027529	Pum1	90	74.630	Mus_spretus
ENSHCOG00000005149	pum1	100	75.370	ENSMPUG00000015454	PUM1	90	75.185	Mustela_putorius_furo
ENSHCOG00000005149	pum1	75	89.388	ENSNBRG00000010689	pum1	86	88.514	Neolamprologus_brichardi
ENSHCOG00000005149	pum1	70	72.222	ENSMEUG00000000976	-	56	74.953	Notamacropus_eugenii
ENSHCOG00000005149	pum1	81	90.654	ENSOPRG00000001776	PUM1	64	90.654	Ochotona_princeps
ENSHCOG00000005149	pum1	100	89.212	ENSONIG00000002290	pum1	92	90.525	Oreochromis_niloticus
ENSHCOG00000005149	pum1	93	59.252	ENSOANG00000004902	-	100	59.151	Ornithorhynchus_anatinus
ENSHCOG00000005149	pum1	100	89.439	ENSORLG00000011482	pum1	92	88.785	Oryzias_latipes
ENSHCOG00000005149	pum1	100	89.439	ENSORLG00020019461	pum1	92	88.785	Oryzias_latipes_hni
ENSHCOG00000005149	pum1	100	89.533	ENSORLG00015011375	pum1	92	88.879	Oryzias_latipes_hsok
ENSHCOG00000005149	pum1	100	75.301	ENSPANG00000016338	PUM1	90	75.185	Papio_anubis
ENSHCOG00000005149	pum1	92	95.304	ENSPKIG00000010578	pum1	90	75.046	Paramormyrops_kingsleyae
ENSHCOG00000005149	pum1	75	87.145	ENSPMGG00000005836	pum1	87	85.767	Periophthalmus_magnuspinnatus
ENSHCOG00000005149	pum1	100	74.977	ENSPCIG00000014151	PUM1	88	80.992	Phascolarctos_cinereus
ENSHCOG00000005149	pum1	100	89.149	ENSPFOG00000007289	pum1	99	86.287	Poecilia_formosa
ENSHCOG00000005149	pum1	100	87.079	ENSPLAG00000007256	pum1	92	86.442	Poecilia_latipinna
ENSHCOG00000005149	pum1	100	88.649	ENSPMEG00000019543	pum1	98	89.962	Poecilia_mexicana
ENSHCOG00000005149	pum1	100	89.024	ENSPREG00000005195	pum1	92	90.338	Poecilia_reticulata
ENSHCOG00000005149	pum1	76	93.210	ENSPCAG00000001979	PUM1	64	93.210	Procavia_capensis
ENSHCOG00000005149	pum1	100	73.241	ENSPVAG00000005207	PUM1	87	73.123	Pteropus_vampyrus
ENSHCOG00000005149	pum1	100	89.212	ENSPNYG00000009518	pum1	92	90.525	Pundamilia_nyererei
ENSHCOG00000005149	pum1	100	79.439	ENSPNAG00000026728	pum1	50	86.286	Pygocentrus_nattereri
ENSHCOG00000005149	pum1	100	75.301	ENSRBIG00000042521	PUM1	90	75.185	Rhinopithecus_bieti
ENSHCOG00000005149	pum1	100	75.116	ENSRROG00000020156	PUM1	90	75.000	Rhinopithecus_roxellana
ENSHCOG00000005149	pum1	100	74.977	ENSSHAG00000010918	PUM1	89	75.254	Sarcophilus_harrisii
ENSHCOG00000005149	pum1	100	88.837	ENSSMAG00000010918	pum1	92	90.244	Scophthalmus_maximus
ENSHCOG00000005149	pum1	100	89.775	ENSSDUG00000009021	pum1	92	91.088	Seriola_dumerili
ENSHCOG00000005149	pum1	93	89.641	ENSSLDG00000009667	pum1	91	88.901	Seriola_lalandi_dorsalis
ENSHCOG00000005149	pum1	100	75.926	ENSSPUG00000006267	PUM1	90	75.648	Sphenodon_punctatus
ENSHCOG00000005149	pum1	100	89.493	ENSSPAG00000016636	pum1	92	90.807	Stegastes_partitus
ENSHCOG00000005149	pum1	90	93.370	ENSSSCG00000003591	PUM1	88	80.165	Sus_scrofa
ENSHCOG00000005149	pum1	100	88.649	ENSTRUG00000013121	pum1	92	89.306	Takifugu_rubripes
ENSHCOG00000005149	pum1	100	88.660	ENSTNIG00000016983	pum1	91	89.316	Tetraodon_nigroviridis
ENSHCOG00000005149	pum1	85	89.024	ENSTBEG00000013810	PUM1	78	89.024	Tupaia_belangeri
ENSHCOG00000005149	pum1	52	93.923	ENSVPAG00000005902	PUM1	82	79.481	Vicugna_pacos
ENSHCOG00000005149	pum1	100	72.315	ENSVVUG00000014631	PUM1	90	75.208	Vulpes_vulpes
ENSHCOG00000005149	pum1	100	72.727	ENSXETG00000012904	pum1	89	71.402	Xenopus_tropicalis
ENSHCOG00000005149	pum1	100	89.306	ENSXMAG00000002945	pum1	92	90.619	Xiphophorus_maculatus