EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000005157 (Gene tree)
Gene ID: 109524288
Gene Symbol: cstf2
Alias: CstF-64|fb11e07|wu:fb11e07|zgc:77730
Full Name: cleavage stimulation factor subunit 2
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 19370 bases
Position: chrKV880218.1:4391500-4410869
Accession: 109524288
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000003758	RRM_1	PF00076.22	2.8e-25	1	1
ENSHCOP00000003766	RRM_1	PF00076.22	2.8e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000008180	-	5539	-	ENSHCOP00000003766	507 (aa)	-	-
ENSHCOT00000008187	-	5482	XM_019884050	ENSHCOP00000003758	488 (aa)	XP_019739609	UPI00094EE53F

Gene Model

Click here to download ENSHCOG00000005157's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005157's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005157	cstf2	97	60.554	ENSG00000101811	CSTF2	93	82.629	Homo_sapiens
ENSHCOG00000005157	cstf2	97	86.164	ENSAPOG00000005630	cstf2	96	85.513	Acanthochromis_polyacanthus
ENSHCOG00000005157	cstf2	97	58.553	ENSAMEG00000002082	CSTF2	84	82.449	Ailuropoda_melanoleuca
ENSHCOG00000005157	cstf2	97	81.667	ENSACIG00000012852	cstf2	96	82.328	Amphilophus_citrinellus
ENSHCOG00000005157	cstf2	97	86.947	ENSAOCG00000020905	cstf2	96	85.474	Amphiprion_ocellaris
ENSHCOG00000005157	cstf2	97	86.105	ENSAPEG00000006526	cstf2	96	85.263	Amphiprion_percula
ENSHCOG00000005157	cstf2	97	83.234	ENSATEG00000018186	cstf2	96	83.034	Anabas_testudineus
ENSHCOG00000005157	cstf2	94	58.027	ENSAPLG00000007255	CSTF2	98	56.784	Anas_platyrhynchos
ENSHCOG00000005157	cstf2	98	75.258	ENSANAG00000022342	CSTF2	80	81.967	Aotus_nancymaae
ENSHCOG00000005157	cstf2	97	85.294	ENSACLG00000000779	cstf2	93	85.513	Astatotilapia_calliptera
ENSHCOG00000005157	cstf2	66	100.000	ENSAMXG00000021477	cstf2	100	92.500	Astyanax_mexicanus
ENSHCOG00000005157	cstf2	97	60.622	ENSBTAG00000003547	CSTF2	99	59.897	Bos_taurus
ENSHCOG00000005157	cstf2	97	63.747	ENSCJAG00000004422	CSTF2	99	58.662	Callithrix_jacchus
ENSHCOG00000005157	cstf2	97	60.900	ENSCAFG00000017551	CSTF2	99	60.241	Canis_familiaris
ENSHCOG00000005157	cstf2	97	75.524	ENSCAFG00020007619	CSTF2	84	82.041	Canis_lupus_dingo
ENSHCOG00000005157	cstf2	97	60.449	ENSCHIG00000016994	CSTF2	84	81.557	Capra_hircus
ENSHCOG00000005157	cstf2	97	60.208	ENSTSYG00000006529	CSTF2	99	59.170	Carlito_syrichta
ENSHCOG00000005157	cstf2	98	60.377	ENSCPOG00000015255	CSTF2	83	92.715	Cavia_porcellus
ENSHCOG00000005157	cstf2	97	62.970	ENSCCAG00000032975	CSTF2	99	62.433	Cebus_capucinus
ENSHCOG00000005157	cstf2	97	62.970	ENSCATG00000022835	CSTF2	99	62.433	Cercocebus_atys
ENSHCOG00000005157	cstf2	97	60.554	ENSCLAG00000001904	CSTF2	84	90.909	Chinchilla_lanigera
ENSHCOG00000005157	cstf2	98	59.204	ENSCSAG00000010360	CSTF2	99	57.048	Chlorocebus_sabaeus
ENSHCOG00000005157	cstf2	69	94.340	ENSCHOG00000012803	CSTF2	75	94.340	Choloepus_hoffmanni
ENSHCOG00000005157	cstf2	98	66.509	ENSCPBG00000014293	CSTF2	89	67.696	Chrysemys_picta_bellii
ENSHCOG00000005157	cstf2	98	62.589	ENSCANG00000030612	CSTF2	99	62.433	Colobus_angolensis_palliatus
ENSHCOG00000005157	cstf2	97	59.725	ENSCGRG00001023023	Cstf2	99	62.768	Cricetulus_griseus_chok1gshd
ENSHCOG00000005157	cstf2	97	61.879	ENSCGRG00000003897	Cstf2	99	61.511	Cricetulus_griseus_crigri
ENSHCOG00000005157	cstf2	97	82.636	ENSCVAG00000005731	cstf2	96	82.255	Cyprinodon_variegatus
ENSHCOG00000005157	cstf2	78	100.000	ENSDARG00000090788	cstf2	94	100.000	Danio_rerio
ENSHCOG00000005157	cstf2	97	61.274	ENSDORG00000007195	Cstf2	82	92.617	Dipodomys_ordii
ENSHCOG00000005157	cstf2	98	58.785	ENSEASG00005001216	CSTF2	84	82.377	Equus_asinus_asinus
ENSHCOG00000005157	cstf2	98	59.524	ENSECAG00000009325	CSTF2	84	82.377	Equus_caballus
ENSHCOG00000005157	cstf2	97	60.034	ENSFCAG00000007000	CSTF2	84	81.967	Felis_catus
ENSHCOG00000005157	cstf2	89	55.709	ENSFALG00000003859	CSTF2	100	54.401	Ficedula_albicollis
ENSHCOG00000005157	cstf2	98	76.429	ENSFDAG00000002416	CSTF2	99	63.350	Fukomys_damarensis
ENSHCOG00000005157	cstf2	97	80.709	ENSFHEG00000017065	cstf2	93	80.354	Fundulus_heteroclitus
ENSHCOG00000005157	cstf2	96	75.104	ENSGMOG00000005145	cstf2	100	75.000	Gadus_morhua
ENSHCOG00000005157	cstf2	98	61.315	ENSGALG00000006760	CSTF2	99	62.955	Gallus_gallus
ENSHCOG00000005157	cstf2	97	83.023	ENSGAFG00000020027	cstf2	96	82.025	Gambusia_affinis
ENSHCOG00000005157	cstf2	97	78.125	ENSGACG00000017326	cstf2	97	78.039	Gasterosteus_aculeatus
ENSHCOG00000005157	cstf2	98	58.469	ENSGAGG00000006037	CSTF2	85	83.133	Gopherus_agassizii
ENSHCOG00000005157	cstf2	97	63.148	ENSGGOG00000022267	CSTF2	99	62.612	Gorilla_gorilla
ENSHCOG00000005157	cstf2	97	84.940	ENSHBUG00000016183	cstf2	93	85.170	Haplochromis_burtoni
ENSHCOG00000005157	cstf2	97	53.565	ENSHGLG00000013455	-	99	52.504	Heterocephalus_glaber_female
ENSHCOG00000005157	cstf2	97	60.554	ENSHGLG00000000659	-	85	89.375	Heterocephalus_glaber_female
ENSHCOG00000005157	cstf2	97	60.554	ENSHGLG00100001130	-	85	89.375	Heterocephalus_glaber_male
ENSHCOG00000005157	cstf2	97	53.484	ENSHGLG00100015391	-	99	52.422	Heterocephalus_glaber_male
ENSHCOG00000005157	cstf2	99	66.916	ENSIPUG00000017839	cstf2	97	66.348	Ictalurus_punctatus
ENSHCOG00000005157	cstf2	98	61.005	ENSSTOG00000023445	CSTF2	84	90.909	Ictidomys_tridecemlineatus
ENSHCOG00000005157	cstf2	97	60.554	ENSJJAG00000020507	Cstf2	84	90.909	Jaculus_jaculus
ENSHCOG00000005157	cstf2	100	80.838	ENSKMAG00000001068	cstf2	96	82.195	Kryptolebias_marmoratus
ENSHCOG00000005157	cstf2	67	96.667	ENSLBEG00000028720	cstf2	94	96.667	Labrus_bergylta
ENSHCOG00000005157	cstf2	97	60.500	ENSLACG00000015927	CSTF2	99	58.418	Latimeria_chalumnae
ENSHCOG00000005157	cstf2	95	92.982	ENSLOCG00000015300	cstf2	79	92.727	Lepisosteus_oculatus
ENSHCOG00000005157	cstf2	97	59.380	ENSLAFG00000000474	CSTF2	84	82.041	Loxodonta_africana
ENSHCOG00000005157	cstf2	98	62.589	ENSMFAG00000043888	CSTF2	99	62.433	Macaca_fascicularis
ENSHCOG00000005157	cstf2	98	62.589	ENSMMUG00000013008	CSTF2	99	62.433	Macaca_mulatta
ENSHCOG00000005157	cstf2	98	62.589	ENSMNEG00000041824	CSTF2	99	62.433	Macaca_nemestrina
ENSHCOG00000005157	cstf2	98	62.589	ENSMLEG00000036870	CSTF2	99	62.433	Mandrillus_leucophaeus
ENSHCOG00000005157	cstf2	94	85.652	ENSMAMG00000020364	cstf2	96	84.615	Mastacembelus_armatus
ENSHCOG00000005157	cstf2	97	85.294	ENSMZEG00005007200	cstf2	96	85.513	Maylandia_zebra
ENSHCOG00000005157	cstf2	87	85.965	ENSMGAG00000004139	CSTF2	84	85.455	Meleagris_gallopavo
ENSHCOG00000005157	cstf2	97	59.278	ENSMAUG00000000965	Cstf2	99	62.143	Mesocricetus_auratus
ENSHCOG00000005157	cstf2	97	61.313	ENSMICG00000014121	CSTF2	80	82.787	Microcebus_murinus
ENSHCOG00000005157	cstf2	97	59.792	ENSMOCG00000008081	Cstf2	99	59.036	Microtus_ochrogaster
ENSHCOG00000005157	cstf2	100	74.590	ENSMMOG00000000538	cstf2	100	75.205	Mola_mola
ENSHCOG00000005157	cstf2	98	60.697	ENSMODG00000011785	CSTF2	99	60.637	Monodelphis_domestica
ENSHCOG00000005157	cstf2	97	77.455	MGP_CAROLIEiJ_G0033383	Cstf2	83	92.157	Mus_caroli
ENSHCOG00000005157	cstf2	97	62.050	ENSMUSG00000031256	Cstf2	83	92.157	Mus_musculus
ENSHCOG00000005157	cstf2	97	77.455	MGP_PahariEiJ_G0031923	Cstf2	80	83.884	Mus_pahari
ENSHCOG00000005157	cstf2	97	77.818	MGP_SPRETEiJ_G0034548	Cstf2	83	92.157	Mus_spretus
ENSHCOG00000005157	cstf2	97	75.874	ENSMPUG00000002339	CSTF2	80	82.041	Mustela_putorius_furo
ENSHCOG00000005157	cstf2	97	56.309	ENSMLUG00000004598	CSTF2	84	73.852	Myotis_lucifugus
ENSHCOG00000005157	cstf2	97	60.757	ENSNGAG00000021985	Cstf2	99	63.350	Nannospalax_galili
ENSHCOG00000005157	cstf2	93	77.263	ENSNBRG00000021694	cstf2	100	78.737	Neolamprologus_brichardi
ENSHCOG00000005157	cstf2	97	63.148	ENSNLEG00000007510	CSTF2	99	62.612	Nomascus_leucogenys
ENSHCOG00000005157	cstf2	88	60.700	ENSMEUG00000014025	-	100	61.479	Notamacropus_eugenii
ENSHCOG00000005157	cstf2	98	64.021	ENSMEUG00000011186	-	99	64.894	Notamacropus_eugenii
ENSHCOG00000005157	cstf2	98	62.039	ENSMEUG00000007875	-	99	62.898	Notamacropus_eugenii
ENSHCOG00000005157	cstf2	89	75.897	ENSOPRG00000003106	CSTF2	82	75.897	Ochotona_princeps
ENSHCOG00000005157	cstf2	97	60.554	ENSODEG00000002059	CSTF2	99	60.000	Octodon_degus
ENSHCOG00000005157	cstf2	78	89.431	ENSONIG00000002631	cstf2	61	89.431	Oreochromis_niloticus
ENSHCOG00000005157	cstf2	85	86.275	ENSOANG00000004208	CSTF2	72	85.455	Ornithorhynchus_anatinus
ENSHCOG00000005157	cstf2	97	60.208	ENSOCUG00000010468	CSTF2	99	63.592	Oryctolagus_cuniculus
ENSHCOG00000005157	cstf2	96	83.065	ENSORLG00000001380	cstf2	96	83.300	Oryzias_latipes
ENSHCOG00000005157	cstf2	96	83.669	ENSORLG00020021917	cstf2	96	83.903	Oryzias_latipes_hni
ENSHCOG00000005157	cstf2	96	83.266	ENSORLG00015011996	cstf2	96	83.501	Oryzias_latipes_hsok
ENSHCOG00000005157	cstf2	96	85.170	ENSOMEG00000015507	cstf2	96	85.177	Oryzias_melastigma
ENSHCOG00000005157	cstf2	97	75.532	ENSOGAG00000011192	CSTF2	83	81.667	Otolemur_garnettii
ENSHCOG00000005157	cstf2	97	60.449	ENSOARG00000001022	CSTF2	84	81.557	Ovis_aries
ENSHCOG00000005157	cstf2	97	63.148	ENSPPAG00000031804	CSTF2	99	62.612	Pan_paniscus
ENSHCOG00000005157	cstf2	97	60.034	ENSPPRG00000022492	CSTF2	84	81.967	Panthera_pardus
ENSHCOG00000005157	cstf2	97	59.691	ENSPTIG00000009922	CSTF2	84	81.148	Panthera_tigris_altaica
ENSHCOG00000005157	cstf2	97	63.148	ENSPTRG00000022090	CSTF2	99	62.612	Pan_troglodytes
ENSHCOG00000005157	cstf2	98	74.914	ENSPANG00000002303	CSTF2	80	81.967	Papio_anubis
ENSHCOG00000005157	cstf2	99	70.276	ENSPKIG00000005033	cstf2	93	71.026	Paramormyrops_kingsleyae
ENSHCOG00000005157	cstf2	97	85.021	ENSPMGG00000006534	cstf2	96	85.443	Periophthalmus_magnuspinnatus
ENSHCOG00000005157	cstf2	97	59.036	ENSPEMG00000019415	Cstf2	99	61.743	Peromyscus_maniculatus_bairdii
ENSHCOG00000005157	cstf2	94	60.946	ENSPCIG00000002989	CSTF2	99	60.167	Phascolarctos_cinereus
ENSHCOG00000005157	cstf2	97	80.933	ENSPLAG00000011176	cstf2	96	80.364	Poecilia_latipinna
ENSHCOG00000005157	cstf2	97	81.670	ENSPMEG00000017743	cstf2	96	81.301	Poecilia_mexicana
ENSHCOG00000005157	cstf2	65	87.952	ENSPREG00000011481	cstf2	97	76.753	Poecilia_reticulata
ENSHCOG00000005157	cstf2	97	59.699	ENSPPYG00000020541	CSTF2	99	57.048	Pongo_abelii
ENSHCOG00000005157	cstf2	98	62.345	ENSPCOG00000027744	CSTF2	99	62.007	Propithecus_coquereli
ENSHCOG00000005157	cstf2	94	48.410	ENSPVAG00000008342	CSTF2	100	47.880	Pteropus_vampyrus
ENSHCOG00000005157	cstf2	97	79.108	ENSPNYG00000010852	cstf2	95	93.243	Pundamilia_nyererei
ENSHCOG00000005157	cstf2	97	69.246	ENSPNAG00000018887	cstf2	97	68.269	Pygocentrus_nattereri
ENSHCOG00000005157	cstf2	97	60.659	ENSRNOG00000048025	Cstf2	99	59.897	Rattus_norvegicus
ENSHCOG00000005157	cstf2	98	62.389	ENSRBIG00000030745	CSTF2	99	62.410	Rhinopithecus_bieti
ENSHCOG00000005157	cstf2	98	62.589	ENSRROG00000045042	CSTF2	99	62.433	Rhinopithecus_roxellana
ENSHCOG00000005157	cstf2	98	75.258	ENSSBOG00000021649	CSTF2	80	81.967	Saimiri_boliviensis_boliviensis
ENSHCOG00000005157	cstf2	86	88.235	ENSSHAG00000003681	CSTF2	83	87.273	Sarcophilus_harrisii
ENSHCOG00000005157	cstf2	97	71.622	ENSSFOG00015006348	cstf2	98	69.259	Scleropages_formosus
ENSHCOG00000005157	cstf2	96	84.958	ENSSMAG00000013463	cstf2	96	85.593	Scophthalmus_maximus
ENSHCOG00000005157	cstf2	98	61.905	ENSSPUG00000005288	-	52	86.008	Sphenodon_punctatus
ENSHCOG00000005157	cstf2	97	63.469	ENSSSCG00000012486	CSTF2	84	82.377	Sus_scrofa
ENSHCOG00000005157	cstf2	98	58.706	ENSTGUG00000002253	CSTF2	99	58.923	Taeniopygia_guttata
ENSHCOG00000005157	cstf2	98	77.864	ENSTNIG00000016860	cstf2	99	78.926	Tetraodon_nigroviridis
ENSHCOG00000005157	cstf2	97	60.034	ENSTTRG00000013556	CSTF2	99	59.316	Tursiops_truncatus
ENSHCOG00000005157	cstf2	97	75.874	ENSUAMG00000026605	CSTF2	84	82.041	Ursus_americanus
ENSHCOG00000005157	cstf2	92	74.570	ENSUMAG00000012417	CSTF2	99	63.702	Ursus_maritimus
ENSHCOG00000005157	cstf2	73	68.935	ENSVPAG00000006466	CSTF2	67	68.824	Vicugna_pacos
ENSHCOG00000005157	cstf2	97	60.900	ENSVVUG00000004717	CSTF2	99	60.241	Vulpes_vulpes
ENSHCOG00000005157	cstf2	86	87.719	ENSXETG00000009642	cstf2	84	87.273	Xenopus_tropicalis
ENSHCOG00000005157	cstf2	66	98.485	ENSXCOG00000016436	cstf2	92	98.507	Xiphophorus_couchianus
ENSHCOG00000005157	cstf2	65	88.218	ENSXMAG00000013524	cstf2	97	78.505	Xiphophorus_maculatus