EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000005266 (Gene tree)
Gene ID: 109523792
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 84627 bases
Position: chrKV880204.1:11802-96428
Accession: 109523792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000019704	TUDOR	PF00567.24	3.2e-26	1	1
ENSHCOP00000019704	SNase	PF00565.17	1.1e-65	1	4
ENSHCOP00000019704	SNase	PF00565.17	1.1e-65	2	4
ENSHCOP00000019704	SNase	PF00565.17	1.1e-65	3	4
ENSHCOP00000019704	SNase	PF00565.17	1.1e-65	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000008068	-	4350	XM_019883197	ENSHCOP00000019704	911 (aa)	XP_019738756	UPI00094ECA60

Gene Model

Click here to download ENSHCOG00000005266's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005266's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005266	snd1	98	83.781	ENSG00000197157	SND1	100	82.566	Homo_sapiens
ENSHCOG00000005266	snd1	100	93.085	ENSAPOG00000017599	snd1	100	93.085	Acanthochromis_polyacanthus
ENSHCOG00000005266	snd1	100	82.604	ENSAMEG00000004664	SND1	94	82.604	Ailuropoda_melanoleuca
ENSHCOG00000005266	snd1	100	89.682	ENSACIG00000003551	snd1	100	89.682	Amphilophus_citrinellus
ENSHCOG00000005266	snd1	100	93.085	ENSAOCG00000014166	snd1	100	93.085	Amphiprion_ocellaris
ENSHCOG00000005266	snd1	100	92.975	ENSAPEG00000007067	snd1	100	92.975	Amphiprion_percula
ENSHCOG00000005266	snd1	98	91.834	ENSATEG00000018475	snd1	89	91.834	Anabas_testudineus
ENSHCOG00000005266	snd1	98	84.004	ENSANAG00000034463	SND1	99	83.973	Aotus_nancymaae
ENSHCOG00000005266	snd1	100	92.316	ENSACLG00000022897	snd1	100	92.316	Astatotilapia_calliptera
ENSHCOG00000005266	snd1	99	88.352	ENSAMXG00000016318	snd1	99	88.352	Astyanax_mexicanus
ENSHCOG00000005266	snd1	98	84.116	ENSBTAG00000010692	SND1	100	82.895	Bos_taurus
ENSHCOG00000005266	snd1	99	46.602	WBGene00006626	tsn-1	99	46.818	Caenorhabditis_elegans
ENSHCOG00000005266	snd1	98	83.893	ENSCJAG00000017668	SND1	99	83.860	Callithrix_jacchus
ENSHCOG00000005266	snd1	100	83.114	ENSCAFG00000001700	SND1	100	83.114	Canis_familiaris
ENSHCOG00000005266	snd1	100	83.114	ENSCAFG00020021639	SND1	100	83.114	Canis_lupus_dingo
ENSHCOG00000005266	snd1	98	84.004	ENSCHIG00000023390	SND1	100	82.785	Capra_hircus
ENSHCOG00000005266	snd1	71	87.193	ENSTSYG00000004979	SND1	96	87.193	Carlito_syrichta
ENSHCOG00000005266	snd1	97	73.761	ENSCAPG00000010677	SND1	97	73.761	Cavia_aperea
ENSHCOG00000005266	snd1	98	83.893	ENSCPOG00000006251	SND1	100	82.675	Cavia_porcellus
ENSHCOG00000005266	snd1	98	84.228	ENSCCAG00000036847	SND1	100	83.004	Cebus_capucinus
ENSHCOG00000005266	snd1	98	84.004	ENSCATG00000035214	SND1	99	83.973	Cercocebus_atys
ENSHCOG00000005266	snd1	98	84.228	ENSCLAG00000011796	SND1	98	85.235	Chinchilla_lanigera
ENSHCOG00000005266	snd1	98	84.004	ENSCSAG00000010182	SND1	100	82.785	Chlorocebus_sabaeus
ENSHCOG00000005266	snd1	77	74.257	ENSCHOG00000002218	SND1	86	74.257	Choloepus_hoffmanni
ENSHCOG00000005266	snd1	100	83.205	ENSCPBG00000018094	SND1	100	83.205	Chrysemys_picta_bellii
ENSHCOG00000005266	snd1	98	56.257	ENSCING00000000524	-	98	56.257	Ciona_intestinalis
ENSHCOG00000005266	snd1	99	56.769	ENSCSAVG00000008807	-	99	56.769	Ciona_savignyi
ENSHCOG00000005266	snd1	98	84.004	ENSCANG00000035119	SND1	100	82.785	Colobus_angolensis_palliatus
ENSHCOG00000005266	snd1	98	83.557	ENSCGRG00001022514	Snd1	98	84.732	Cricetulus_griseus_chok1gshd
ENSHCOG00000005266	snd1	97	83.521	ENSCGRG00000012277	Snd1	99	83.521	Cricetulus_griseus_crigri
ENSHCOG00000005266	snd1	100	92.097	ENSCSEG00000008661	snd1	100	92.097	Cynoglossus_semilaevis
ENSHCOG00000005266	snd1	100	91.767	ENSCVAG00000010316	snd1	100	91.767	Cyprinodon_variegatus
ENSHCOG00000005266	snd1	100	88.719	ENSDARG00000006766	snd1	99	89.947	Danio_rerio
ENSHCOG00000005266	snd1	97	82.002	ENSDNOG00000006795	SND1	100	82.002	Dasypus_novemcinctus
ENSHCOG00000005266	snd1	98	83.781	ENSDORG00000000336	Snd1	100	82.566	Dipodomys_ordii
ENSHCOG00000005266	snd1	98	50.217	FBgn0035121	Tudor-SN	99	49.893	Drosophila_melanogaster
ENSHCOG00000005266	snd1	90	86.111	ENSETEG00000000375	SND1	92	86.111	Echinops_telfairi
ENSHCOG00000005266	snd1	57	67.027	ENSEBUG00000014201	-	84	76.630	Eptatretus_burgeri
ENSHCOG00000005266	snd1	98	82.728	ENSEASG00005008513	SND1	100	81.553	Equus_asinus_asinus
ENSHCOG00000005266	snd1	98	84.004	ENSECAG00000011451	SND1	100	82.785	Equus_caballus
ENSHCOG00000005266	snd1	98	74.832	ENSEEUG00000014737	SND1	100	73.794	Erinaceus_europaeus
ENSHCOG00000005266	snd1	99	88.364	ENSELUG00000001805	snd1	96	88.364	Esox_lucius
ENSHCOG00000005266	snd1	100	82.785	ENSFCAG00000008289	SND1	100	82.785	Felis_catus
ENSHCOG00000005266	snd1	98	83.781	ENSFDAG00000015881	SND1	100	82.566	Fukomys_damarensis
ENSHCOG00000005266	snd1	100	90.226	ENSFHEG00000004093	snd1	99	92.114	Fundulus_heteroclitus
ENSHCOG00000005266	snd1	75	81.638	ENSGMOG00000018932	snd1	66	81.638	Gadus_morhua
ENSHCOG00000005266	snd1	100	92.645	ENSGAFG00000008421	snd1	100	92.645	Gambusia_affinis
ENSHCOG00000005266	snd1	100	60.369	ENSGACG00000019793	snd1	100	60.369	Gasterosteus_aculeatus
ENSHCOG00000005266	snd1	99	83.038	ENSGGOG00000009614	SND1	99	83.973	Gorilla_gorilla
ENSHCOG00000005266	snd1	100	92.316	ENSHBUG00000019135	snd1	100	92.316	Haplochromis_burtoni
ENSHCOG00000005266	snd1	98	83.781	ENSHGLG00000003618	SND1	98	84.899	Heterocephalus_glaber_female
ENSHCOG00000005266	snd1	98	83.781	ENSHGLG00100012449	SND1	99	83.781	Heterocephalus_glaber_male
ENSHCOG00000005266	snd1	99	87.706	ENSIPUG00000013279	snd1	99	87.706	Ictalurus_punctatus
ENSHCOG00000005266	snd1	98	84.116	ENSSTOG00000002140	SND1	100	82.895	Ictidomys_tridecemlineatus
ENSHCOG00000005266	snd1	98	83.893	ENSJJAG00000009561	Snd1	100	82.675	Jaculus_jaculus
ENSHCOG00000005266	snd1	100	92.536	ENSKMAG00000016997	snd1	100	92.536	Kryptolebias_marmoratus
ENSHCOG00000005266	snd1	100	94.958	ENSLBEG00000013563	snd1	100	92.975	Labrus_bergylta
ENSHCOG00000005266	snd1	99	88.093	ENSLOCG00000015537	snd1	99	87.595	Lepisosteus_oculatus
ENSHCOG00000005266	snd1	100	83.114	ENSLAFG00000009696	SND1	100	83.114	Loxodonta_africana
ENSHCOG00000005266	snd1	98	84.004	ENSMFAG00000038114	SND1	99	83.973	Macaca_fascicularis
ENSHCOG00000005266	snd1	98	84.004	ENSMMUG00000015432	SND1	100	82.785	Macaca_mulatta
ENSHCOG00000005266	snd1	98	84.004	ENSMNEG00000039808	SND1	97	87.302	Macaca_nemestrina
ENSHCOG00000005266	snd1	98	83.893	ENSMLEG00000029040	SND1	97	87.302	Mandrillus_leucophaeus
ENSHCOG00000005266	snd1	100	91.877	ENSMAMG00000011739	snd1	100	91.877	Mastacembelus_armatus
ENSHCOG00000005266	snd1	100	92.316	ENSMZEG00005005681	snd1	100	92.316	Maylandia_zebra
ENSHCOG00000005266	snd1	98	84.116	ENSMICG00000000097	SND1	100	82.895	Microcebus_murinus
ENSHCOG00000005266	snd1	98	84.116	ENSMOCG00000005040	Snd1	100	82.895	Microtus_ochrogaster
ENSHCOG00000005266	snd1	100	92.206	ENSMMOG00000001795	snd1	100	92.206	Mola_mola
ENSHCOG00000005266	snd1	98	83.221	ENSMODG00000015182	SND1	100	82.018	Monodelphis_domestica
ENSHCOG00000005266	snd1	100	91.438	ENSMALG00000012071	snd1	100	91.438	Monopterus_albus
ENSHCOG00000005266	snd1	98	83.781	MGP_CAROLIEiJ_G0028159	Snd1	99	84.706	Mus_caroli
ENSHCOG00000005266	snd1	98	83.557	ENSMUSG00000001424	Snd1	100	82.346	Mus_musculus
ENSHCOG00000005266	snd1	98	83.781	MGP_PahariEiJ_G0021917	Snd1	100	84.706	Mus_pahari
ENSHCOG00000005266	snd1	98	83.781	MGP_SPRETEiJ_G0029159	Snd1	100	82.566	Mus_spretus
ENSHCOG00000005266	snd1	100	82.675	ENSMPUG00000006545	SND1	100	82.675	Mustela_putorius_furo
ENSHCOG00000005266	snd1	97	82.943	ENSMLUG00000017130	SND1	99	82.943	Myotis_lucifugus
ENSHCOG00000005266	snd1	98	84.004	ENSNGAG00000011186	Snd1	100	82.785	Nannospalax_galili
ENSHCOG00000005266	snd1	100	92.097	ENSNBRG00000006681	snd1	100	92.097	Neolamprologus_brichardi
ENSHCOG00000005266	snd1	100	82.785	ENSNLEG00000012263	SND1	99	85.378	Nomascus_leucogenys
ENSHCOG00000005266	snd1	91	86.111	ENSOPRG00000013405	SND1	92	86.111	Ochotona_princeps
ENSHCOG00000005266	snd1	98	83.893	ENSODEG00000011502	SND1	100	82.895	Octodon_degus
ENSHCOG00000005266	snd1	100	92.097	ENSONIG00000011481	snd1	97	92.097	Oreochromis_niloticus
ENSHCOG00000005266	snd1	98	82.809	ENSOANG00000000817	SND1	98	82.809	Ornithorhynchus_anatinus
ENSHCOG00000005266	snd1	99	82.527	ENSOCUG00000001620	SND1	99	82.527	Oryctolagus_cuniculus
ENSHCOG00000005266	snd1	100	91.877	ENSORLG00000015201	snd1	100	91.877	Oryzias_latipes
ENSHCOG00000005266	snd1	100	92.097	ENSORLG00020013991	snd1	100	92.097	Oryzias_latipes_hni
ENSHCOG00000005266	snd1	100	92.097	ENSORLG00015012436	snd1	100	92.097	Oryzias_latipes_hsok
ENSHCOG00000005266	snd1	100	92.316	ENSOMEG00000006406	snd1	100	92.316	Oryzias_melastigma
ENSHCOG00000005266	snd1	98	83.817	ENSOGAG00000013356	SND1	95	82.213	Otolemur_garnettii
ENSHCOG00000005266	snd1	97	81.623	ENSOARG00000002149	SND1	100	81.623	Ovis_aries
ENSHCOG00000005266	snd1	98	83.893	ENSPPAG00000042947	SND1	99	83.860	Pan_paniscus
ENSHCOG00000005266	snd1	100	82.785	ENSPPRG00000004494	SND1	100	82.785	Panthera_pardus
ENSHCOG00000005266	snd1	100	82.675	ENSPTIG00000014214	SND1	100	82.675	Panthera_tigris_altaica
ENSHCOG00000005266	snd1	98	83.893	ENSPTRG00000023911	SND1	99	83.860	Pan_troglodytes
ENSHCOG00000005266	snd1	97	83.973	ENSPANG00000011997	SND1	99	83.973	Papio_anubis
ENSHCOG00000005266	snd1	98	86.394	ENSPKIG00000023494	snd1	99	85.823	Paramormyrops_kingsleyae
ENSHCOG00000005266	snd1	92	91.737	ENSPMGG00000003629	snd1	99	91.737	Periophthalmus_magnuspinnatus
ENSHCOG00000005266	snd1	98	83.893	ENSPEMG00000010240	Snd1	100	82.675	Peromyscus_maniculatus_bairdii
ENSHCOG00000005266	snd1	97	73.251	ENSPMAG00000007915	-	99	73.251	Petromyzon_marinus
ENSHCOG00000005266	snd1	98	83.445	ENSPCIG00000011561	SND1	100	82.237	Phascolarctos_cinereus
ENSHCOG00000005266	snd1	100	92.097	ENSPFOG00000001557	snd1	100	92.097	Poecilia_formosa
ENSHCOG00000005266	snd1	100	92.316	ENSPLAG00000018459	snd1	97	92.316	Poecilia_latipinna
ENSHCOG00000005266	snd1	100	92.316	ENSPMEG00000006803	snd1	100	92.316	Poecilia_mexicana
ENSHCOG00000005266	snd1	100	92.097	ENSPREG00000002189	snd1	100	92.097	Poecilia_reticulata
ENSHCOG00000005266	snd1	91	86.111	ENSPPYG00000017972	SND1	100	86.111	Pongo_abelii
ENSHCOG00000005266	snd1	98	73.490	ENSPCAG00000011305	SND1	100	72.478	Procavia_capensis
ENSHCOG00000005266	snd1	98	84.004	ENSPCOG00000026791	SND1	100	83.991	Propithecus_coquereli
ENSHCOG00000005266	snd1	98	81.879	ENSPVAG00000013945	SND1	100	80.702	Pteropus_vampyrus
ENSHCOG00000005266	snd1	100	92.206	ENSPNYG00000000932	snd1	100	92.206	Pundamilia_nyererei
ENSHCOG00000005266	snd1	99	88.681	ENSPNAG00000001206	snd1	99	88.681	Pygocentrus_nattereri
ENSHCOG00000005266	snd1	98	83.893	ENSRNOG00000031173	Snd1	100	82.751	Rattus_norvegicus
ENSHCOG00000005266	snd1	72	87.085	ENSRBIG00000027782	-	93	88.068	Rhinopithecus_bieti
ENSHCOG00000005266	snd1	98	84.004	ENSRROG00000033020	SND1	100	82.785	Rhinopithecus_roxellana
ENSHCOG00000005266	snd1	100	82.108	ENSSBOG00000032461	SND1	99	83.860	Saimiri_boliviensis_boliviensis
ENSHCOG00000005266	snd1	98	80.112	ENSSHAG00000015359	SND1	100	80.112	Sarcophilus_harrisii
ENSHCOG00000005266	snd1	98	87.251	ENSSFOG00015001103	snd1	99	86.710	Scleropages_formosus
ENSHCOG00000005266	snd1	100	93.194	ENSSMAG00000001932	snd1	95	93.194	Scophthalmus_maximus
ENSHCOG00000005266	snd1	100	92.865	ENSSDUG00000002699	snd1	94	92.865	Seriola_dumerili
ENSHCOG00000005266	snd1	100	85.510	ENSSLDG00000001950	snd1	100	85.510	Seriola_lalandi_dorsalis
ENSHCOG00000005266	snd1	86	79.971	ENSSARG00000004877	SND1	92	79.971	Sorex_araneus
ENSHCOG00000005266	snd1	70	80.243	ENSSPUG00000017586	SND1	96	80.243	Sphenodon_punctatus
ENSHCOG00000005266	snd1	73	93.739	ENSSPAG00000021398	snd1	99	93.739	Stegastes_partitus
ENSHCOG00000005266	snd1	98	83.893	ENSSSCG00000016590	SND1	100	82.675	Sus_scrofa
ENSHCOG00000005266	snd1	100	91.218	ENSTRUG00000014067	snd1	100	94.444	Takifugu_rubripes
ENSHCOG00000005266	snd1	100	91.438	ENSTNIG00000011019	snd1	100	91.438	Tetraodon_nigroviridis
ENSHCOG00000005266	snd1	93	78.471	ENSTBEG00000003999	SND1	100	78.471	Tupaia_belangeri
ENSHCOG00000005266	snd1	99	79.642	ENSTTRG00000006059	SND1	100	78.509	Tursiops_truncatus
ENSHCOG00000005266	snd1	70	75.916	ENSUAMG00000002820	-	89	75.916	Ursus_americanus
ENSHCOG00000005266	snd1	87	82.700	ENSUAMG00000005604	-	93	82.700	Ursus_americanus
ENSHCOG00000005266	snd1	100	82.895	ENSUMAG00000005960	SND1	100	82.895	Ursus_maritimus
ENSHCOG00000005266	snd1	77	86.111	ENSVPAG00000008302	SND1	74	86.111	Vicugna_pacos
ENSHCOG00000005266	snd1	100	83.004	ENSVVUG00000007226	SND1	100	83.004	Vulpes_vulpes
ENSHCOG00000005266	snd1	97	79.481	ENSXETG00000023043	snd1	100	79.338	Xenopus_tropicalis
ENSHCOG00000005266	snd1	92	90.143	ENSXCOG00000013629	snd1	99	90.143	Xiphophorus_couchianus
ENSHCOG00000005266	snd1	100	92.865	ENSXMAG00000011469	snd1	100	92.865	Xiphophorus_maculatus