EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000005458 (Gene tree)
Gene ID: 109511378
Gene Symbol: smarca5
Alias: SWI/SNF related|matrix associated|actin dependent regulator of chromatin A5|chunp6878|fb26d12|fb49g04|im:7146484|wu:fb26d12|wu:fb49g04|zgc:158434
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 9839 bases
Position: chrKV880534.1:3579070-3588908
Accession: 109511378
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000004067	ResIII	PF04851.15	1.2e-10	1	1
ENSHCOP00000004067	DEAD	PF00270.29	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000007687	-	3576	XM_019862448	ENSHCOP00000004067	1035 (aa)	XP_019718007	UPI00094E7BF2

Gene Model

Click here to download ENSHCOG00000005458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000005458	smarca5	53	42.729	ENSHCOG00000012787	chd1l	60	42.549

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005458	smarca5	95	82.727	ENSG00000102038	SMARCA1	92	83.538	Homo_sapiens
ENSHCOG00000005458	smarca5	100	97.782	ENSAPOG00000016035	smarca5	99	98.802	Acanthochromis_polyacanthus
ENSHCOG00000005458	smarca5	95	81.836	ENSAMEG00000015218	SMARCA1	92	82.525	Ailuropoda_melanoleuca
ENSHCOG00000005458	smarca5	87	97.669	ENSACIG00000016982	smarca5	100	97.669	Amphilophus_citrinellus
ENSHCOG00000005458	smarca5	100	97.782	ENSAOCG00000015578	smarca5	100	97.782	Amphiprion_ocellaris
ENSHCOG00000005458	smarca5	100	97.782	ENSAPEG00000011117	smarca5	99	99.409	Amphiprion_percula
ENSHCOG00000005458	smarca5	100	97.297	ENSATEG00000012894	smarca5	100	97.297	Anabas_testudineus
ENSHCOG00000005458	smarca5	95	84.012	ENSAPLG00000013149	SMARCA1	99	84.151	Anas_platyrhynchos
ENSHCOG00000005458	smarca5	98	82.174	ENSACAG00000011376	SMARCA1	93	84.867	Anolis_carolinensis
ENSHCOG00000005458	smarca5	95	77.980	ENSANAG00000023098	SMARCA1	92	78.732	Aotus_nancymaae
ENSHCOG00000005458	smarca5	100	96.528	ENSACLG00000025356	smarca5	100	96.528	Astatotilapia_calliptera
ENSHCOG00000005458	smarca5	90	84.318	ENSAMXG00000011227	smarca1	99	85.404	Astyanax_mexicanus
ENSHCOG00000005458	smarca5	100	92.285	ENSAMXG00000005709	smarca5	100	92.093	Astyanax_mexicanus
ENSHCOG00000005458	smarca5	95	83.078	ENSBTAG00000002292	SMARCA1	90	83.491	Bos_taurus
ENSHCOG00000005458	smarca5	92	64.633	WBGene00002169	isw-1	92	65.139	Caenorhabditis_elegans
ENSHCOG00000005458	smarca5	95	83.401	ENSCJAG00000002868	SMARCA1	92	83.538	Callithrix_jacchus
ENSHCOG00000005458	smarca5	95	73.486	ENSCAFG00000018673	SMARCA1	99	75.176	Canis_familiaris
ENSHCOG00000005458	smarca5	95	82.929	ENSCAFG00020001751	SMARCA1	92	83.640	Canis_lupus_dingo
ENSHCOG00000005458	smarca5	95	82.776	ENSCHIG00000009837	SMARCA1	92	83.231	Capra_hircus
ENSHCOG00000005458	smarca5	98	79.981	ENSTSYG00000004240	SMARCA1	94	84.411	Carlito_syrichta
ENSHCOG00000005458	smarca5	95	81.727	ENSCPOG00000013601	SMARCA1	93	82.419	Cavia_porcellus
ENSHCOG00000005458	smarca5	95	80.101	ENSCCAG00000030817	SMARCA1	92	80.879	Cebus_capucinus
ENSHCOG00000005458	smarca5	93	83.851	ENSCATG00000015921	SMARCA1	90	84.771	Cercocebus_atys
ENSHCOG00000005458	smarca5	95	82.323	ENSCLAG00000002171	SMARCA1	92	83.027	Chinchilla_lanigera
ENSHCOG00000005458	smarca5	95	82.727	ENSCSAG00000008460	SMARCA1	92	83.538	Chlorocebus_sabaeus
ENSHCOG00000005458	smarca5	95	83.992	ENSCPBG00000001146	SMARCA1	92	84.458	Chrysemys_picta_bellii
ENSHCOG00000005458	smarca5	96	73.956	ENSCING00000004110	swi/snf	97	75.306	Ciona_intestinalis
ENSHCOG00000005458	smarca5	96	73.637	ENSCSAVG00000004620	-	99	76.286	Ciona_savignyi
ENSHCOG00000005458	smarca5	95	82.828	ENSCANG00000007183	SMARCA1	92	83.640	Colobus_angolensis_palliatus
ENSHCOG00000005458	smarca5	95	82.121	ENSCGRG00001010776	Smarca1	92	82.822	Cricetulus_griseus_chok1gshd
ENSHCOG00000005458	smarca5	95	81.662	ENSCGRG00000015301	Smarca1	94	83.369	Cricetulus_griseus_crigri
ENSHCOG00000005458	smarca5	100	97.008	ENSCSEG00000000328	smarca5	100	97.008	Cynoglossus_semilaevis
ENSHCOG00000005458	smarca5	100	95.849	ENSCVAG00000008668	smarca5	99	97.403	Cyprinodon_variegatus
ENSHCOG00000005458	smarca5	94	82.748	ENSDARG00000012776	smarca1	96	82.748	Danio_rerio
ENSHCOG00000005458	smarca5	100	91.514	ENSDARG00000052348	smarca5	97	93.049	Danio_rerio
ENSHCOG00000005458	smarca5	95	82.653	ENSDNOG00000004315	SMARCA1	91	84.452	Dasypus_novemcinctus
ENSHCOG00000005458	smarca5	97	81.145	ENSDORG00000009270	Smarca1	90	84.984	Dipodomys_ordii
ENSHCOG00000005458	smarca5	96	73.092	FBgn0011604	Iswi	97	74.400	Drosophila_melanogaster
ENSHCOG00000005458	smarca5	78	81.818	ENSETEG00000017426	SMARCA1	83	81.818	Echinops_telfairi
ENSHCOG00000005458	smarca5	97	80.872	ENSEBUG00000001239	smarca5	96	82.837	Eptatretus_burgeri
ENSHCOG00000005458	smarca5	95	79.049	ENSEASG00005008218	SMARCA1	99	79.776	Equus_asinus_asinus
ENSHCOG00000005458	smarca5	95	82.828	ENSECAG00000012106	SMARCA1	92	83.538	Equus_caballus
ENSHCOG00000005458	smarca5	77	83.444	ENSEEUG00000014927	SMARCA1	80	83.444	Erinaceus_europaeus
ENSHCOG00000005458	smarca5	94	83.963	ENSELUG00000010515	smarca1	95	85.059	Esox_lucius
ENSHCOG00000005458	smarca5	95	82.828	ENSFCAG00000018496	SMARCA1	92	83.538	Felis_catus
ENSHCOG00000005458	smarca5	88	85.120	ENSFALG00000000209	SMARCA1	98	85.120	Ficedula_albicollis
ENSHCOG00000005458	smarca5	94	81.534	ENSFDAG00000009818	SMARCA1	93	83.281	Fukomys_damarensis
ENSHCOG00000005458	smarca5	100	94.747	ENSFHEG00000007687	smarca5	97	96.634	Fundulus_heteroclitus
ENSHCOG00000005458	smarca5	96	81.791	ENSGALG00000008431	SMARCA1	95	85.057	Gallus_gallus
ENSHCOG00000005458	smarca5	100	96.429	ENSGAFG00000017731	smarca5	100	96.429	Gambusia_affinis
ENSHCOG00000005458	smarca5	94	84.465	ENSGAGG00000023575	SMARCA1	99	84.465	Gopherus_agassizii
ENSHCOG00000005458	smarca5	70	96.000	ENSGGOG00000012841	-	91	80.029	Gorilla_gorilla
ENSHCOG00000005458	smarca5	95	82.020	ENSHGLG00000003080	SMARCA1	92	82.720	Heterocephalus_glaber_female
ENSHCOG00000005458	smarca5	95	81.526	ENSHGLG00100001102	SMARCA1	98	82.215	Heterocephalus_glaber_male
ENSHCOG00000005458	smarca5	100	91.418	ENSIPUG00000005229	SMARCA5	99	93.413	Ictalurus_punctatus
ENSHCOG00000005458	smarca5	97	81.773	ENSIPUG00000016905	Smarca1	99	84.016	Ictalurus_punctatus
ENSHCOG00000005458	smarca5	97	81.773	ENSSTOG00000014524	SMARCA1	97	81.070	Ictidomys_tridecemlineatus
ENSHCOG00000005458	smarca5	97	80.754	ENSJJAG00000002593	Smarca1	93	82.299	Jaculus_jaculus
ENSHCOG00000005458	smarca5	100	96.429	ENSKMAG00000003777	smarca5	100	96.429	Kryptolebias_marmoratus
ENSHCOG00000005458	smarca5	100	96.525	ENSLBEG00000018112	smarca5	100	96.525	Labrus_bergylta
ENSHCOG00000005458	smarca5	94	96.626	ENSLBEG00000013295	SMARCA1	100	98.354	Labrus_bergylta
ENSHCOG00000005458	smarca5	97	83.068	ENSLACG00000016697	SMARCA1	95	85.361	Latimeria_chalumnae
ENSHCOG00000005458	smarca5	94	85.977	ENSLOCG00000014591	smarca1	95	85.977	Lepisosteus_oculatus
ENSHCOG00000005458	smarca5	96	81.175	ENSLAFG00000000896	SMARCA1	98	82.317	Loxodonta_africana
ENSHCOG00000005458	smarca5	95	82.727	ENSMFAG00000002117	SMARCA1	93	84.591	Macaca_fascicularis
ENSHCOG00000005458	smarca5	93	83.851	ENSMMUG00000008818	SMARCA1	97	84.452	Macaca_mulatta
ENSHCOG00000005458	smarca5	93	83.851	ENSMNEG00000041768	SMARCA1	93	84.591	Macaca_nemestrina
ENSHCOG00000005458	smarca5	95	82.727	ENSMLEG00000043198	SMARCA1	92	83.538	Mandrillus_leucophaeus
ENSHCOG00000005458	smarca5	100	96.827	ENSMAMG00000014294	smarca5	100	96.827	Mastacembelus_armatus
ENSHCOG00000005458	smarca5	100	96.528	ENSMZEG00005009369	smarca5	100	96.528	Maylandia_zebra
ENSHCOG00000005458	smarca5	95	82.897	ENSMGAG00000007042	SMARCA1	97	83.030	Meleagris_gallopavo
ENSHCOG00000005458	smarca5	93	82.389	ENSMAUG00000008133	Smarca1	90	83.157	Mesocricetus_auratus
ENSHCOG00000005458	smarca5	97	82.090	ENSMICG00000015768	SMARCA1	92	83.845	Microcebus_murinus
ENSHCOG00000005458	smarca5	95	81.407	ENSMOCG00000009464	Smarca1	92	82.096	Microtus_ochrogaster
ENSHCOG00000005458	smarca5	96	96.274	ENSMMOG00000005547	smarca5	100	96.274	Mola_mola
ENSHCOG00000005458	smarca5	95	83.996	ENSMODG00000013187	-	94	84.308	Monodelphis_domestica
ENSHCOG00000005458	smarca5	100	96.724	ENSMALG00000002081	smarca5	100	96.724	Monopterus_albus
ENSHCOG00000005458	smarca5	97	80.336	MGP_CAROLIEiJ_G0033034	Smarca1	92	82.299	Mus_caroli
ENSHCOG00000005458	smarca5	97	80.594	ENSMUSG00000031099	Smarca1	92	82.299	Mus_musculus
ENSHCOG00000005458	smarca5	96	80.758	MGP_PahariEiJ_G0031579	Smarca1	92	82.582	Mus_pahari
ENSHCOG00000005458	smarca5	97	80.594	MGP_SPRETEiJ_G0034192	Smarca1	92	82.299	Mus_spretus
ENSHCOG00000005458	smarca5	95	81.936	ENSMPUG00000017423	SMARCA1	87	82.626	Mustela_putorius_furo
ENSHCOG00000005458	smarca5	95	80.677	ENSMLUG00000029614	SMARCA1	93	81.048	Myotis_lucifugus
ENSHCOG00000005458	smarca5	93	82.904	ENSNGAG00000006492	Smarca1	90	83.686	Nannospalax_galili
ENSHCOG00000005458	smarca5	96	97.485	ENSNBRG00000004463	smarca5	99	97.485	Neolamprologus_brichardi
ENSHCOG00000005458	smarca5	95	81.038	ENSNLEG00000015179	SMARCA1	94	83.864	Nomascus_leucogenys
ENSHCOG00000005458	smarca5	89	76.150	ENSMEUG00000008819	SMARCA1	97	76.426	Notamacropus_eugenii
ENSHCOG00000005458	smarca5	97	79.415	ENSODEG00000012163	SMARCA1	90	83.281	Octodon_degus
ENSHCOG00000005458	smarca5	100	96.625	ENSONIG00000009993	smarca5	100	96.625	Oreochromis_niloticus
ENSHCOG00000005458	smarca5	94	84.877	ENSOANG00000002862	SMARCA1	99	84.877	Ornithorhynchus_anatinus
ENSHCOG00000005458	smarca5	95	83.283	ENSOCUG00000001047	SMARCA1	92	83.742	Oryctolagus_cuniculus
ENSHCOG00000005458	smarca5	100	96.923	ENSORLG00000021998	smarca5	100	96.923	Oryzias_latipes
ENSHCOG00000005458	smarca5	100	97.016	ENSORLG00020017679	smarca5	100	97.016	Oryzias_latipes_hni
ENSHCOG00000005458	smarca5	100	97.011	ENSORLG00015017210	smarca5	100	97.011	Oryzias_latipes_hsok
ENSHCOG00000005458	smarca5	100	97.011	ENSOMEG00000000086	smarca5	100	97.011	Oryzias_melastigma
ENSHCOG00000005458	smarca5	93	83.368	ENSOGAG00000004399	SMARCA1	90	83.912	Otolemur_garnettii
ENSHCOG00000005458	smarca5	94	83.231	ENSOARG00000014638	SMARCA1	99	83.231	Ovis_aries
ENSHCOG00000005458	smarca5	95	82.727	ENSPPAG00000034647	SMARCA1	92	83.538	Pan_paniscus
ENSHCOG00000005458	smarca5	95	82.929	ENSPPRG00000008929	SMARCA1	92	83.640	Panthera_pardus
ENSHCOG00000005458	smarca5	95	81.132	ENSPTIG00000000915	SMARCA1	96	81.809	Panthera_tigris_altaica
ENSHCOG00000005458	smarca5	95	82.727	ENSPTRG00000049876	SMARCA1	90	84.771	Pan_troglodytes
ENSHCOG00000005458	smarca5	95	82.727	ENSPANG00000003871	SMARCA1	92	83.538	Papio_anubis
ENSHCOG00000005458	smarca5	95	81.689	ENSPKIG00000013411	smarca1	96	83.807	Paramormyrops_kingsleyae
ENSHCOG00000005458	smarca5	94	84.465	ENSPSIG00000010101	SMARCA1	99	84.465	Pelodiscus_sinensis
ENSHCOG00000005458	smarca5	93	82.698	ENSPEMG00000017503	Smarca1	90	83.475	Peromyscus_maniculatus_bairdii
ENSHCOG00000005458	smarca5	95	84.420	ENSPCIG00000015460	SMARCA1	96	84.734	Phascolarctos_cinereus
ENSHCOG00000005458	smarca5	100	96.236	ENSPFOG00000007649	smarca5	100	96.236	Poecilia_formosa
ENSHCOG00000005458	smarca5	100	96.236	ENSPLAG00000003363	smarca5	100	96.236	Poecilia_latipinna
ENSHCOG00000005458	smarca5	100	96.332	ENSPMEG00000019849	smarca5	100	96.332	Poecilia_mexicana
ENSHCOG00000005458	smarca5	100	96.332	ENSPREG00000023250	smarca5	100	96.332	Poecilia_reticulata
ENSHCOG00000005458	smarca5	95	79.899	ENSPPYG00000020703	SMARCA1	92	80.675	Pongo_abelii
ENSHCOG00000005458	smarca5	75	78.125	ENSPCOG00000020722	SMARCA1	93	80.415	Propithecus_coquereli
ENSHCOG00000005458	smarca5	87	83.355	ENSPVAG00000003805	SMARCA1	90	77.450	Pteropus_vampyrus
ENSHCOG00000005458	smarca5	58	97.098	ENSPNYG00000012299	smarca5	92	97.098	Pundamilia_nyererei
ENSHCOG00000005458	smarca5	97	80.796	ENSRNOG00000003762	Smarca1	92	82.515	Rattus_norvegicus
ENSHCOG00000005458	smarca5	95	82.828	ENSRROG00000034167	SMARCA1	92	83.640	Rhinopithecus_roxellana
ENSHCOG00000005458	smarca5	94	83.436	ENSSBOG00000020641	SMARCA1	99	83.436	Saimiri_boliviensis_boliviensis
ENSHCOG00000005458	smarca5	94	79.938	ENSSHAG00000013518	SMARCA1	99	79.938	Sarcophilus_harrisii
ENSHCOG00000005458	smarca5	95	84.350	ENSSFOG00015009043	smarca1	96	84.836	Scleropages_formosus
ENSHCOG00000005458	smarca5	98	90.837	ENSSFOG00015016794	smarca5	100	93.505	Scleropages_formosus
ENSHCOG00000005458	smarca5	100	96.243	ENSSMAG00000004801	smarca5	100	96.243	Scophthalmus_maximus
ENSHCOG00000005458	smarca5	100	96.911	ENSSDUG00000020690	smarca5	100	96.911	Seriola_dumerili
ENSHCOG00000005458	smarca5	100	96.911	ENSSLDG00000025190	smarca5	100	96.911	Seriola_lalandi_dorsalis
ENSHCOG00000005458	smarca5	78	83.986	ENSSARG00000000842	SMARCA1	81	83.986	Sorex_araneus
ENSHCOG00000005458	smarca5	96	82.998	ENSSPUG00000000590	SMARCA1	93	85.162	Sphenodon_punctatus
ENSHCOG00000005458	smarca5	100	97.589	ENSSPAG00000002894	smarca5	100	97.589	Stegastes_partitus
ENSHCOG00000005458	smarca5	94	83.179	ENSSSCG00000012649	SMARCA1	95	83.112	Sus_scrofa
ENSHCOG00000005458	smarca5	95	83.707	ENSTGUG00000003899	-	99	83.845	Taeniopygia_guttata
ENSHCOG00000005458	smarca5	100	95.656	ENSTRUG00000014094	smarca5	100	94.589	Takifugu_rubripes
ENSHCOG00000005458	smarca5	98	95.177	ENSTNIG00000017717	smarca5	97	95.545	Tetraodon_nigroviridis
ENSHCOG00000005458	smarca5	86	82.705	ENSTBEG00000014973	SMARCA1	89	82.751	Tupaia_belangeri
ENSHCOG00000005458	smarca5	93	79.469	ENSTTRG00000006168	SMARCA1	96	80.231	Tursiops_truncatus
ENSHCOG00000005458	smarca5	95	82.626	ENSUAMG00000020201	SMARCA1	92	83.333	Ursus_americanus
ENSHCOG00000005458	smarca5	97	77.988	ENSUMAG00000004073	SMARCA1	95	85.185	Ursus_maritimus
ENSHCOG00000005458	smarca5	73	86.513	ENSVPAG00000010492	-	77	86.851	Vicugna_pacos
ENSHCOG00000005458	smarca5	95	82.929	ENSVVUG00000008878	SMARCA1	98	84.878	Vulpes_vulpes
ENSHCOG00000005458	smarca5	95	84.028	ENSXETG00000001526	smarca1	98	84.497	Xenopus_tropicalis
ENSHCOG00000005458	smarca5	97	96.918	ENSXCOG00000011170	smarca5	99	96.918	Xiphophorus_couchianus
ENSHCOG00000005458	smarca5	100	96.236	ENSXMAG00000009678	smarca5	100	96.236	Xiphophorus_maculatus