EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000005591 (Gene tree)
Gene ID: 109510982
Gene Symbol: lsm6
Alias: zgc:92379
Full Name: LSM6 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 2475 bases
Position: chrKV880534.1:3297072-3299546
Accession: 109510982
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000019938	LSM	PF01423.22	1.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000007462	-	1275	XM_019861703	ENSHCOP00000019938	80 (aa)	XP_019717262	UPI00094EAB4F

Gene Model

Click here to download ENSHCOG00000005591's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG
hcq03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005591's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000005591	lsm6	74	42.424	ENSHCOG00000018663	snrpf	52	42.424
ENSHCOG00000005591	lsm6	50	50.000	ENSHCOG00000010425	-	62	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005591	lsm6	100	95.000	ENSG00000164167	LSM6	100	95.000	Homo_sapiens
ENSHCOG00000005591	lsm6	100	98.750	ENSAPOG00000019832	lsm6	100	98.750	Acanthochromis_polyacanthus
ENSHCOG00000005591	lsm6	100	95.000	ENSAMEG00000016671	LSM6	100	95.000	Ailuropoda_melanoleuca
ENSHCOG00000005591	lsm6	100	98.750	ENSACIG00000016711	lsm6	100	98.750	Amphilophus_citrinellus
ENSHCOG00000005591	lsm6	100	98.750	ENSAOCG00000002110	lsm6	52	98.750	Amphiprion_ocellaris
ENSHCOG00000005591	lsm6	100	98.750	ENSAPEG00000023992	lsm6	100	98.750	Amphiprion_percula
ENSHCOG00000005591	lsm6	100	98.750	ENSATEG00000012610	lsm6	100	98.750	Anabas_testudineus
ENSHCOG00000005591	lsm6	96	94.805	ENSAPLG00000012594	LSM6	99	94.805	Anas_platyrhynchos
ENSHCOG00000005591	lsm6	100	95.000	ENSACAG00000004004	LSM6	100	95.000	Anolis_carolinensis
ENSHCOG00000005591	lsm6	100	82.500	ENSANAG00000021839	-	100	82.500	Aotus_nancymaae
ENSHCOG00000005591	lsm6	100	95.000	ENSANAG00000030568	-	100	95.000	Aotus_nancymaae
ENSHCOG00000005591	lsm6	100	98.750	ENSACLG00000025621	lsm6	100	98.750	Astatotilapia_calliptera
ENSHCOG00000005591	lsm6	100	97.500	ENSAMXG00000038738	lsm6	100	97.500	Astyanax_mexicanus
ENSHCOG00000005591	lsm6	100	88.750	ENSBTAG00000052085	-	100	88.750	Bos_taurus
ENSHCOG00000005591	lsm6	100	95.000	ENSBTAG00000014060	LSM6	100	95.000	Bos_taurus
ENSHCOG00000005591	lsm6	94	78.667	WBGene00003080	lsm-6	97	78.667	Caenorhabditis_elegans
ENSHCOG00000005591	lsm6	100	95.000	ENSCJAG00000002482	LSM6	100	95.000	Callithrix_jacchus
ENSHCOG00000005591	lsm6	100	95.000	ENSCAFG00000007738	LSM6	100	95.000	Canis_familiaris
ENSHCOG00000005591	lsm6	100	95.000	ENSCAFG00020025902	LSM6	100	95.000	Canis_lupus_dingo
ENSHCOG00000005591	lsm6	100	80.000	ENSCHIG00000024198	-	95	80.000	Capra_hircus
ENSHCOG00000005591	lsm6	100	95.000	ENSCHIG00000010334	-	100	95.000	Capra_hircus
ENSHCOG00000005591	lsm6	89	97.183	ENSCHIG00000012864	-	100	97.183	Capra_hircus
ENSHCOG00000005591	lsm6	100	95.000	ENSTSYG00000026972	LSM6	100	95.000	Carlito_syrichta
ENSHCOG00000005591	lsm6	80	89.062	ENSTSYG00000012759	-	84	89.062	Carlito_syrichta
ENSHCOG00000005591	lsm6	100	95.000	ENSCAPG00000008104	LSM6	100	95.000	Cavia_aperea
ENSHCOG00000005591	lsm6	81	93.846	ENSCAPG00000011179	-	100	93.846	Cavia_aperea
ENSHCOG00000005591	lsm6	100	95.000	ENSCPOG00000032655	LSM6	100	95.000	Cavia_porcellus
ENSHCOG00000005591	lsm6	100	95.000	ENSCCAG00000036437	LSM6	100	95.000	Cebus_capucinus
ENSHCOG00000005591	lsm6	99	94.937	ENSCCAG00000020665	-	99	94.937	Cebus_capucinus
ENSHCOG00000005591	lsm6	100	72.500	ENSCATG00000038799	-	100	72.500	Cercocebus_atys
ENSHCOG00000005591	lsm6	100	95.000	ENSCATG00000002770	-	100	95.000	Cercocebus_atys
ENSHCOG00000005591	lsm6	89	77.465	ENSCLAG00000005685	-	100	77.465	Chinchilla_lanigera
ENSHCOG00000005591	lsm6	100	95.000	ENSCLAG00000005495	LSM6	100	95.000	Chinchilla_lanigera
ENSHCOG00000005591	lsm6	100	95.000	ENSCSAG00000003421	LSM6	100	95.000	Chlorocebus_sabaeus
ENSHCOG00000005591	lsm6	100	75.000	ENSCHOG00000003420	LSM6	100	75.000	Choloepus_hoffmanni
ENSHCOG00000005591	lsm6	100	95.000	ENSCPBG00000027472	LSM6	84	95.000	Chrysemys_picta_bellii
ENSHCOG00000005591	lsm6	95	94.737	ENSCING00000019152	-	93	94.737	Ciona_intestinalis
ENSHCOG00000005591	lsm6	95	96.053	ENSCSAVG00000002065	-	93	96.053	Ciona_savignyi
ENSHCOG00000005591	lsm6	100	95.000	ENSCANG00000041263	-	100	95.000	Colobus_angolensis_palliatus
ENSHCOG00000005591	lsm6	100	68.750	ENSCANG00000035214	-	100	68.750	Colobus_angolensis_palliatus
ENSHCOG00000005591	lsm6	100	95.000	ENSCANG00000006849	-	100	95.000	Colobus_angolensis_palliatus
ENSHCOG00000005591	lsm6	100	95.000	ENSCGRG00001017142	Lsm6	100	95.000	Cricetulus_griseus_chok1gshd
ENSHCOG00000005591	lsm6	100	95.000	ENSCGRG00000008320	Lsm6	100	95.000	Cricetulus_griseus_crigri
ENSHCOG00000005591	lsm6	100	98.750	ENSCSEG00000000423	lsm6	100	98.750	Cynoglossus_semilaevis
ENSHCOG00000005591	lsm6	100	98.750	ENSCVAG00000001592	lsm6	100	98.750	Cyprinodon_variegatus
ENSHCOG00000005591	lsm6	100	97.500	ENSDARG00000036995	lsm6	100	97.500	Danio_rerio
ENSHCOG00000005591	lsm6	86	97.101	ENSDNOG00000040186	-	74	97.101	Dasypus_novemcinctus
ENSHCOG00000005591	lsm6	100	93.750	ENSDNOG00000044848	-	100	93.750	Dasypus_novemcinctus
ENSHCOG00000005591	lsm6	100	95.000	ENSDORG00000000933	Lsm6	100	95.000	Dipodomys_ordii
ENSHCOG00000005591	lsm6	96	81.818	FBgn0034564	CG9344	97	81.818	Drosophila_melanogaster
ENSHCOG00000005591	lsm6	60	91.667	ENSETEG00000013098	LSM6	100	91.667	Echinops_telfairi
ENSHCOG00000005591	lsm6	100	95.000	ENSEBUG00000017073	lsm6	100	95.000	Eptatretus_burgeri
ENSHCOG00000005591	lsm6	86	97.101	ENSEASG00005001533	LSM6	72	97.101	Equus_asinus_asinus
ENSHCOG00000005591	lsm6	100	95.000	ENSECAG00000021036	LSM6	100	95.000	Equus_caballus
ENSHCOG00000005591	lsm6	99	67.089	ENSEEUG00000002101	LSM6	100	67.089	Erinaceus_europaeus
ENSHCOG00000005591	lsm6	100	97.500	ENSELUG00000014301	LSM6	100	97.500	Esox_lucius
ENSHCOG00000005591	lsm6	100	95.000	ENSFCAG00000003047	LSM6	100	95.000	Felis_catus
ENSHCOG00000005591	lsm6	100	95.000	ENSFALG00000005509	LSM6	92	95.000	Ficedula_albicollis
ENSHCOG00000005591	lsm6	100	85.000	ENSFDAG00000019073	-	100	85.000	Fukomys_damarensis
ENSHCOG00000005591	lsm6	100	95.000	ENSFDAG00000020913	-	100	95.000	Fukomys_damarensis
ENSHCOG00000005591	lsm6	100	98.750	ENSFHEG00000007948	lsm6	100	98.750	Fundulus_heteroclitus
ENSHCOG00000005591	lsm6	100	98.750	ENSGMOG00000015550	lsm6	100	98.750	Gadus_morhua
ENSHCOG00000005591	lsm6	100	95.000	ENSGALG00000009985	LSM6	100	95.000	Gallus_gallus
ENSHCOG00000005591	lsm6	100	98.750	ENSGAFG00000017763	lsm6	100	98.750	Gambusia_affinis
ENSHCOG00000005591	lsm6	99	100.000	ENSGACG00000017223	lsm6	99	100.000	Gasterosteus_aculeatus
ENSHCOG00000005591	lsm6	100	95.000	ENSGAGG00000020980	LSM6	100	95.000	Gopherus_agassizii
ENSHCOG00000005591	lsm6	100	95.000	ENSGGOG00000001310	LSM6	100	95.000	Gorilla_gorilla
ENSHCOG00000005591	lsm6	100	98.750	ENSHBUG00000008618	lsm6	100	98.750	Haplochromis_burtoni
ENSHCOG00000005591	lsm6	100	95.000	ENSHGLG00000000205	LSM6	100	95.000	Heterocephalus_glaber_female
ENSHCOG00000005591	lsm6	100	95.000	ENSHGLG00100014341	LSM6	100	95.000	Heterocephalus_glaber_male
ENSHCOG00000005591	lsm6	100	96.250	ENSIPUG00000004508	lsm6	100	96.250	Ictalurus_punctatus
ENSHCOG00000005591	lsm6	100	95.000	ENSSTOG00000002678	LSM6	100	95.000	Ictidomys_tridecemlineatus
ENSHCOG00000005591	lsm6	96	75.325	ENSJJAG00000016942	-	97	75.325	Jaculus_jaculus
ENSHCOG00000005591	lsm6	100	85.000	ENSJJAG00000011211	-	100	85.000	Jaculus_jaculus
ENSHCOG00000005591	lsm6	100	95.000	ENSJJAG00000013845	-	100	95.000	Jaculus_jaculus
ENSHCOG00000005591	lsm6	100	98.750	ENSKMAG00000004105	lsm6	100	98.750	Kryptolebias_marmoratus
ENSHCOG00000005591	lsm6	100	98.750	ENSLBEG00000018441	lsm6	100	98.750	Labrus_bergylta
ENSHCOG00000005591	lsm6	100	95.000	ENSLACG00000006937	LSM6	100	95.000	Latimeria_chalumnae
ENSHCOG00000005591	lsm6	100	97.500	ENSLOCG00000008852	lsm6	100	97.500	Lepisosteus_oculatus
ENSHCOG00000005591	lsm6	100	96.250	ENSLOCG00000017683	-	100	96.250	Lepisosteus_oculatus
ENSHCOG00000005591	lsm6	100	95.000	ENSLAFG00000001952	LSM6	100	95.000	Loxodonta_africana
ENSHCOG00000005591	lsm6	100	95.000	ENSMFAG00000033073	LSM6	100	95.000	Macaca_fascicularis
ENSHCOG00000005591	lsm6	100	95.000	ENSMNEG00000034820	-	100	95.000	Macaca_nemestrina
ENSHCOG00000005591	lsm6	100	73.750	ENSMNEG00000040412	-	100	73.750	Macaca_nemestrina
ENSHCOG00000005591	lsm6	100	95.000	ENSMLEG00000035153	LSM6	100	95.000	Mandrillus_leucophaeus
ENSHCOG00000005591	lsm6	100	98.750	ENSMAMG00000014029	lsm6	100	98.750	Mastacembelus_armatus
ENSHCOG00000005591	lsm6	100	98.750	ENSMZEG00005009146	lsm6	100	98.750	Maylandia_zebra
ENSHCOG00000005591	lsm6	100	95.000	ENSMGAG00000003802	LSM6	100	95.000	Meleagris_gallopavo
ENSHCOG00000005591	lsm6	100	95.000	ENSMAUG00000014938	Lsm6	100	95.000	Mesocricetus_auratus
ENSHCOG00000005591	lsm6	100	95.000	ENSMICG00000042599	LSM6	100	95.000	Microcebus_murinus
ENSHCOG00000005591	lsm6	98	88.462	ENSMICG00000047411	-	92	88.462	Microcebus_murinus
ENSHCOG00000005591	lsm6	100	95.000	ENSMOCG00000020049	Lsm6	100	95.000	Microtus_ochrogaster
ENSHCOG00000005591	lsm6	100	98.750	ENSMMOG00000005470	lsm6	100	98.750	Mola_mola
ENSHCOG00000005591	lsm6	100	92.500	ENSMMOG00000007379	-	100	92.500	Mola_mola
ENSHCOG00000005591	lsm6	100	95.000	ENSMODG00000000526	LSM6	100	95.000	Monodelphis_domestica
ENSHCOG00000005591	lsm6	100	98.750	ENSMALG00000002419	lsm6	100	98.750	Monopterus_albus
ENSHCOG00000005591	lsm6	100	95.000	MGP_CAROLIEiJ_G0031245	Lsm6	100	95.000	Mus_caroli
ENSHCOG00000005591	lsm6	100	95.000	ENSMUSG00000031683	Lsm6	100	95.000	Mus_musculus
ENSHCOG00000005591	lsm6	100	95.000	MGP_PahariEiJ_G0022851	Lsm6	100	95.000	Mus_pahari
ENSHCOG00000005591	lsm6	100	95.000	MGP_SPRETEiJ_G0032365	Lsm6	100	95.000	Mus_spretus
ENSHCOG00000005591	lsm6	99	96.203	ENSMPUG00000006936	LSM6	92	96.203	Mustela_putorius_furo
ENSHCOG00000005591	lsm6	100	95.000	ENSMLUG00000026355	LSM6	100	95.000	Myotis_lucifugus
ENSHCOG00000005591	lsm6	100	95.000	ENSNGAG00000019116	Lsm6	100	95.000	Nannospalax_galili
ENSHCOG00000005591	lsm6	100	98.750	ENSNBRG00000004887	lsm6	100	98.750	Neolamprologus_brichardi
ENSHCOG00000005591	lsm6	100	95.000	ENSNLEG00000005584	LSM6	100	95.000	Nomascus_leucogenys
ENSHCOG00000005591	lsm6	100	93.750	ENSOPRG00000011199	LSM6	100	93.750	Ochotona_princeps
ENSHCOG00000005591	lsm6	100	93.750	ENSODEG00000002307	-	100	93.750	Octodon_degus
ENSHCOG00000005591	lsm6	100	92.500	ENSODEG00000020420	-	100	92.500	Octodon_degus
ENSHCOG00000005591	lsm6	100	93.750	ENSODEG00000019419	-	100	93.750	Octodon_degus
ENSHCOG00000005591	lsm6	96	85.714	ENSODEG00000018684	-	100	85.714	Octodon_degus
ENSHCOG00000005591	lsm6	100	98.750	ENSONIG00000010005	lsm6	100	98.750	Oreochromis_niloticus
ENSHCOG00000005591	lsm6	98	69.231	ENSOANG00000006894	-	100	69.231	Ornithorhynchus_anatinus
ENSHCOG00000005591	lsm6	98	69.231	ENSOANG00000006895	-	100	69.231	Ornithorhynchus_anatinus
ENSHCOG00000005591	lsm6	100	97.500	ENSORLG00000024158	lsm6	100	97.500	Oryzias_latipes
ENSHCOG00000005591	lsm6	100	97.500	ENSORLG00020017383	lsm6	100	97.500	Oryzias_latipes_hni
ENSHCOG00000005591	lsm6	100	97.500	ENSORLG00015016903	lsm6	100	97.500	Oryzias_latipes_hsok
ENSHCOG00000005591	lsm6	100	98.750	ENSOMEG00000000074	lsm6	100	98.750	Oryzias_melastigma
ENSHCOG00000005591	lsm6	100	95.000	ENSOGAG00000026665	-	100	95.000	Otolemur_garnettii
ENSHCOG00000005591	lsm6	100	95.000	ENSOGAG00000033153	-	100	95.000	Otolemur_garnettii
ENSHCOG00000005591	lsm6	86	97.101	ENSOARG00000008509	-	88	97.101	Ovis_aries
ENSHCOG00000005591	lsm6	99	89.873	ENSOARG00000011641	-	92	89.873	Ovis_aries
ENSHCOG00000005591	lsm6	100	95.000	ENSPPAG00000037929	LSM6	100	95.000	Pan_paniscus
ENSHCOG00000005591	lsm6	100	95.000	ENSPPRG00000012806	LSM6	100	95.000	Panthera_pardus
ENSHCOG00000005591	lsm6	100	95.000	ENSPTIG00000019769	LSM6	100	95.000	Panthera_tigris_altaica
ENSHCOG00000005591	lsm6	100	95.000	ENSPTRG00000016488	LSM6	100	95.000	Pan_troglodytes
ENSHCOG00000005591	lsm6	100	95.000	ENSPANG00000006552	LSM6	100	95.000	Papio_anubis
ENSHCOG00000005591	lsm6	100	97.500	ENSPKIG00000016176	lsm6	100	97.500	Paramormyrops_kingsleyae
ENSHCOG00000005591	lsm6	100	95.000	ENSPSIG00000016942	LSM6	100	95.000	Pelodiscus_sinensis
ENSHCOG00000005591	lsm6	100	98.750	ENSPMGG00000018004	lsm6	100	98.750	Periophthalmus_magnuspinnatus
ENSHCOG00000005591	lsm6	100	95.000	ENSPEMG00000012410	Lsm6	100	95.000	Peromyscus_maniculatus_bairdii
ENSHCOG00000005591	lsm6	100	96.250	ENSPMAG00000006949	lsm6	100	96.250	Petromyzon_marinus
ENSHCOG00000005591	lsm6	100	95.000	ENSPCIG00000023469	LSM6	80	97.101	Phascolarctos_cinereus
ENSHCOG00000005591	lsm6	100	98.750	ENSPFOG00000008881	lsm6	100	98.750	Poecilia_formosa
ENSHCOG00000005591	lsm6	100	98.750	ENSPLAG00000003202	lsm6	100	98.750	Poecilia_latipinna
ENSHCOG00000005591	lsm6	100	98.750	ENSPMEG00000004000	lsm6	100	98.750	Poecilia_mexicana
ENSHCOG00000005591	lsm6	100	98.750	ENSPREG00000023235	lsm6	100	98.750	Poecilia_reticulata
ENSHCOG00000005591	lsm6	100	95.000	ENSPPYG00000015105	LSM6	100	95.000	Pongo_abelii
ENSHCOG00000005591	lsm6	100	95.000	ENSPCOG00000013899	LSM6	100	95.000	Propithecus_coquereli
ENSHCOG00000005591	lsm6	100	98.750	ENSPNYG00000012614	lsm6	100	98.750	Pundamilia_nyererei
ENSHCOG00000005591	lsm6	100	97.500	ENSPNAG00000018779	lsm6	100	97.500	Pygocentrus_nattereri
ENSHCOG00000005591	lsm6	100	95.000	ENSRNOG00000030374	Lsm6	100	95.000	Rattus_norvegicus
ENSHCOG00000005591	lsm6	100	95.000	ENSRNOG00000049370	LOC100360750	100	95.000	Rattus_norvegicus
ENSHCOG00000005591	lsm6	100	95.000	ENSRBIG00000027878	LSM6	100	95.000	Rhinopithecus_bieti
ENSHCOG00000005591	lsm6	100	95.000	ENSRROG00000024868	LSM6	100	95.000	Rhinopithecus_roxellana
ENSHCOG00000005591	lsm6	95	41.250	YDR378C	-	93	45.000	Saccharomyces_cerevisiae
ENSHCOG00000005591	lsm6	100	95.000	ENSSBOG00000021229	-	100	95.000	Saimiri_boliviensis_boliviensis
ENSHCOG00000005591	lsm6	100	68.750	ENSSBOG00000028103	-	100	68.750	Saimiri_boliviensis_boliviensis
ENSHCOG00000005591	lsm6	100	97.500	ENSSFOG00015016480	lsm6	100	97.500	Scleropages_formosus
ENSHCOG00000005591	lsm6	100	98.750	ENSSMAG00000004550	lsm6	100	98.750	Scophthalmus_maximus
ENSHCOG00000005591	lsm6	100	98.750	ENSSDUG00000020459	lsm6	50	98.750	Seriola_dumerili
ENSHCOG00000005591	lsm6	86	100.000	ENSSLDG00000004136	-	59	100.000	Seriola_lalandi_dorsalis
ENSHCOG00000005591	lsm6	100	98.750	ENSSLDG00000020533	lsm6	83	98.750	Seriola_lalandi_dorsalis
ENSHCOG00000005591	lsm6	60	91.667	ENSSARG00000000689	LSM6	100	91.667	Sorex_araneus
ENSHCOG00000005591	lsm6	100	95.000	ENSSPUG00000008657	LSM6	100	95.000	Sphenodon_punctatus
ENSHCOG00000005591	lsm6	100	98.750	ENSSPAG00000003246	lsm6	100	98.750	Stegastes_partitus
ENSHCOG00000005591	lsm6	100	95.000	ENSSSCG00000035973	LSM6	100	95.000	Sus_scrofa
ENSHCOG00000005591	lsm6	100	95.000	ENSTGUG00000002663	LSM6	100	95.000	Taeniopygia_guttata
ENSHCOG00000005591	lsm6	100	98.750	ENSTRUG00000023398	lsm6	100	98.750	Takifugu_rubripes
ENSHCOG00000005591	lsm6	100	98.750	ENSTNIG00000017725	lsm6	100	98.750	Tetraodon_nigroviridis
ENSHCOG00000005591	lsm6	100	95.000	ENSTTRG00000004609	LSM6	100	95.000	Tursiops_truncatus
ENSHCOG00000005591	lsm6	98	88.462	ENSUAMG00000014213	LSM6	64	88.462	Ursus_americanus
ENSHCOG00000005591	lsm6	98	88.462	ENSUMAG00000015727	LSM6	64	88.462	Ursus_maritimus
ENSHCOG00000005591	lsm6	100	95.000	ENSVPAG00000006922	LSM6	100	95.000	Vicugna_pacos
ENSHCOG00000005591	lsm6	100	95.000	ENSVVUG00000009254	LSM6	68	95.000	Vulpes_vulpes
ENSHCOG00000005591	lsm6	100	95.000	ENSXETG00000023683	lsm6	100	95.000	Xenopus_tropicalis
ENSHCOG00000005591	lsm6	100	98.750	ENSXMAG00000009606	lsm6	100	98.750	Xiphophorus_maculatus