EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000005622 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: HSRNASEB|RNPC1|SEB4D|dJ800J21.2|seb4B
Full Name: RNA-binding protein 38-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 9392 bases
Position: chrKV880526.1:75822-85213
Accession: 109509865
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000004214	RRM_1	PF00076.22	2.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000007416	-	1593	XM_019859753	ENSHCOP00000004214	347 (aa)	XP_019715312	-

Gene Model

Click here to download ENSHCOG00000005622's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000005622's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000005622	-	57	56.061	ENSHCOG00000019040	rbm38	79	56.061

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000005622	-	54	73.438	ENSG00000132819	RBM38	91	87.500	Homo_sapiens
ENSHCOG00000005622	-	58	91.089	ENSAPOG00000009939	-	92	91.089	Acanthochromis_polyacanthus
ENSHCOG00000005622	-	60	68.056	ENSAPOG00000003301	rbm38	86	67.130	Acanthochromis_polyacanthus
ENSHCOG00000005622	-	59	91.667	ENSACIG00000012502	-	97	97.368	Amphilophus_citrinellus
ENSHCOG00000005622	-	60	67.593	ENSACIG00000000010	rbm38	85	66.667	Amphilophus_citrinellus
ENSHCOG00000005622	-	57	91.919	ENSAOCG00000012559	RBM38	87	91.304	Amphiprion_ocellaris
ENSHCOG00000005622	-	60	68.056	ENSAOCG00000013497	-	86	67.130	Amphiprion_ocellaris
ENSHCOG00000005622	-	57	91.919	ENSAPEG00000023581	-	85	91.304	Amphiprion_percula
ENSHCOG00000005622	-	59	69.378	ENSAPEG00000013137	rbm38	85	68.421	Amphiprion_percula
ENSHCOG00000005622	-	60	66.667	ENSATEG00000016366	rbm38	88	65.854	Anabas_testudineus
ENSHCOG00000005622	-	57	92.424	ENSATEG00000016710	-	85	91.304	Anabas_testudineus
ENSHCOG00000005622	-	54	73.158	ENSACAG00000016238	RBM38	84	66.981	Anolis_carolinensis
ENSHCOG00000005622	-	52	75.135	ENSANAG00000031959	RBM38	82	89.109	Aotus_nancymaae
ENSHCOG00000005622	-	59	91.262	ENSACLG00000019514	-	84	91.262	Astatotilapia_calliptera
ENSHCOG00000005622	-	60	83.092	ENSAMXG00000015601	-	86	82.126	Astyanax_mexicanus
ENSHCOG00000005622	-	56	68.912	ENSAMXG00000038120	rbm38	81	67.876	Astyanax_mexicanus
ENSHCOG00000005622	-	54	72.396	ENSBTAG00000008105	RBM38	79	71.875	Bos_taurus
ENSHCOG00000005622	-	54	73.958	ENSCJAG00000019139	RBM38	82	89.109	Callithrix_jacchus
ENSHCOG00000005622	-	54	73.958	ENSCAFG00020021943	RBM38	79	72.917	Canis_lupus_dingo
ENSHCOG00000005622	-	54	71.354	ENSCHIG00000002609	RBM38	79	70.833	Capra_hircus
ENSHCOG00000005622	-	54	72.917	ENSCPOG00000012781	RBM38	79	71.354	Cavia_porcellus
ENSHCOG00000005622	-	54	73.958	ENSCCAG00000036872	RBM38	82	89.109	Cebus_capucinus
ENSHCOG00000005622	-	54	73.438	ENSCATG00000032133	RBM38	82	89.109	Cercocebus_atys
ENSHCOG00000005622	-	54	73.438	ENSCLAG00000005906	RBM38	82	71.875	Chinchilla_lanigera
ENSHCOG00000005622	-	54	73.438	ENSCSAG00000015503	RBM38	79	72.396	Chlorocebus_sabaeus
ENSHCOG00000005622	-	56	72.637	ENSCPBG00000024059	RBM38	91	71.642	Chrysemys_picta_bellii
ENSHCOG00000005622	-	52	56.593	ENSCANG00000030105	-	66	55.495	Colobus_angolensis_palliatus
ENSHCOG00000005622	-	54	70.984	ENSCGRG00001012928	Rbm38	81	69.898	Cricetulus_griseus_chok1gshd
ENSHCOG00000005622	-	57	89.447	ENSCSEG00000004701	-	86	88.889	Cynoglossus_semilaevis
ENSHCOG00000005622	-	54	59.686	ENSCSEG00000020943	rbm38	63	61.979	Cynoglossus_semilaevis
ENSHCOG00000005622	-	58	86.634	ENSCVAG00000005472	-	84	86.408	Cyprinodon_variegatus
ENSHCOG00000005622	-	58	67.317	ENSCVAG00000015952	rbm38	81	65.854	Cyprinodon_variegatus
ENSHCOG00000005622	-	60	76.329	ENSDARG00000058818	rbm38	85	75.362	Danio_rerio
ENSHCOG00000005622	-	54	73.958	ENSDNOG00000032004	RBM38	91	72.917	Dasypus_novemcinctus
ENSHCOG00000005622	-	54	71.875	ENSECAG00000007700	RBM38	79	71.354	Equus_caballus
ENSHCOG00000005622	-	54	70.984	ENSEEUG00000013489	RBM38	79	70.984	Erinaceus_europaeus
ENSHCOG00000005622	-	56	70.500	ENSELUG00000000585	-	87	69.000	Esox_lucius
ENSHCOG00000005622	-	58	85.922	ENSELUG00000005849	-	84	84.951	Esox_lucius
ENSHCOG00000005622	-	54	73.438	ENSFCAG00000042916	RBM38	82	88.119	Felis_catus
ENSHCOG00000005622	-	50	76.271	ENSFALG00000010805	RBM38	90	75.141	Ficedula_albicollis
ENSHCOG00000005622	-	57	66.667	ENSFHEG00000017748	rbm38	81	65.686	Fundulus_heteroclitus
ENSHCOG00000005622	-	59	86.408	ENSFHEG00000006160	-	92	86.408	Fundulus_heteroclitus
ENSHCOG00000005622	-	53	84.324	ENSGMOG00000016655	-	99	84.865	Gadus_morhua
ENSHCOG00000005622	-	52	75.806	ENSGALG00000026081	RBM38	91	71.144	Gallus_gallus
ENSHCOG00000005622	-	56	84.000	ENSGACG00000009873	-	92	84.000	Gasterosteus_aculeatus
ENSHCOG00000005622	-	52	75.410	ENSGACG00000015224	rbm38	87	74.317	Gasterosteus_aculeatus
ENSHCOG00000005622	-	56	73.134	ENSGAGG00000001187	RBM38	91	72.139	Gopherus_agassizii
ENSHCOG00000005622	-	59	91.262	ENSHBUG00000011778	-	86	91.960	Haplochromis_burtoni
ENSHCOG00000005622	-	59	67.453	ENSHBUG00000012058	rbm38	84	66.509	Haplochromis_burtoni
ENSHCOG00000005622	-	54	69.110	ENSHGLG00000015077	RBM38	79	70.833	Heterocephalus_glaber_female
ENSHCOG00000005622	-	57	80.303	ENSIPUG00000019349	-	82	78.283	Ictalurus_punctatus
ENSHCOG00000005622	-	50	63.043	ENSKMAG00000012402	rbm38	79	61.957	Kryptolebias_marmoratus
ENSHCOG00000005622	-	60	66.667	ENSLBEG00000018878	rbm38	86	66.667	Labrus_bergylta
ENSHCOG00000005622	-	58	92.500	ENSLBEG00000016163	RBM38	87	92.500	Labrus_bergylta
ENSHCOG00000005622	-	60	81.159	ENSLOCG00000003456	rbm38	87	79.710	Lepisosteus_oculatus
ENSHCOG00000005622	-	54	73.438	ENSMFAG00000043808	RBM38	82	89.109	Macaca_fascicularis
ENSHCOG00000005622	-	54	73.438	ENSMMUG00000031391	RBM38	82	89.109	Macaca_mulatta
ENSHCOG00000005622	-	54	73.438	ENSMNEG00000034683	RBM38	82	89.109	Macaca_nemestrina
ENSHCOG00000005622	-	59	70.952	ENSMAMG00000024135	rbm38	83	70.142	Mastacembelus_armatus
ENSHCOG00000005622	-	57	91.919	ENSMAMG00000020499	RBM38	85	90.821	Mastacembelus_armatus
ENSHCOG00000005622	-	59	91.262	ENSMZEG00005000849	-	86	91.960	Maylandia_zebra
ENSHCOG00000005622	-	59	67.453	ENSMZEG00005026036	rbm38	84	66.509	Maylandia_zebra
ENSHCOG00000005622	-	54	72.539	ENSMAUG00000021211	Rbm38	81	70.918	Mesocricetus_auratus
ENSHCOG00000005622	-	51	75.275	ENSMICG00000038011	RBM38	83	74.176	Microcebus_murinus
ENSHCOG00000005622	-	54	71.649	ENSMOCG00000008715	Rbm38	81	70.051	Microtus_ochrogaster
ENSHCOG00000005622	-	57	92.424	ENSMMOG00000020051	-	87	90.306	Mola_mola
ENSHCOG00000005622	-	53	74.603	ENSMODG00000016458	RBM38	84	72.139	Monodelphis_domestica
ENSHCOG00000005622	-	54	93.651	ENSMALG00000004680	RBM38	72	93.651	Monopterus_albus
ENSHCOG00000005622	-	55	67.857	MGP_CAROLIEiJ_G0024745	Rbm38	71	80.702	Mus_caroli
ENSHCOG00000005622	-	55	67.857	ENSMUSG00000027510	Rbm38	71	80.702	Mus_musculus
ENSHCOG00000005622	-	55	67.857	MGP_PahariEiJ_G0026186	Rbm38	71	80.702	Mus_pahari
ENSHCOG00000005622	-	55	67.857	MGP_SPRETEiJ_G0025665	Rbm38	71	80.702	Mus_spretus
ENSHCOG00000005622	-	51	75.275	ENSMPUG00000006518	RBM38	93	73.016	Mustela_putorius_furo
ENSHCOG00000005622	-	52	74.054	ENSMLUG00000011140	RBM38	85	72.973	Myotis_lucifugus
ENSHCOG00000005622	-	59	68.396	ENSNBRG00000022685	rbm38	84	67.453	Neolamprologus_brichardi
ENSHCOG00000005622	-	59	91.262	ENSNBRG00000022545	-	84	91.262	Neolamprologus_brichardi
ENSHCOG00000005622	-	54	73.958	ENSODEG00000007980	RBM38	79	72.396	Octodon_degus
ENSHCOG00000005622	-	59	67.943	ENSONIG00000017073	rbm38	84	66.986	Oreochromis_niloticus
ENSHCOG00000005622	-	59	91.262	ENSONIG00000020324	-	85	91.262	Oreochromis_niloticus
ENSHCOG00000005622	-	53	73.545	ENSOANG00000009259	RBM38	72	73.016	Ornithorhynchus_anatinus
ENSHCOG00000005622	-	57	64.532	ENSORLG00000012154	rbm38	80	64.039	Oryzias_latipes
ENSHCOG00000005622	-	56	88.205	ENSORLG00000027180	-	85	86.124	Oryzias_latipes
ENSHCOG00000005622	-	56	88.205	ENSORLG00020020751	-	85	86.124	Oryzias_latipes_hni
ENSHCOG00000005622	-	60	62.037	ENSORLG00020017871	rbm38	85	61.574	Oryzias_latipes_hni
ENSHCOG00000005622	-	57	87.879	ENSORLG00015017040	-	85	86.538	Oryzias_latipes_hsok
ENSHCOG00000005622	-	60	62.791	ENSORLG00015012606	rbm38	85	62.326	Oryzias_latipes_hsok
ENSHCOG00000005622	-	56	89.286	ENSOMEG00000023912	-	85	87.923	Oryzias_melastigma
ENSHCOG00000005622	-	60	64.186	ENSOMEG00000006805	rbm38	85	63.256	Oryzias_melastigma
ENSHCOG00000005622	-	54	73.958	ENSOGAG00000029136	RBM38	78	72.917	Otolemur_garnettii
ENSHCOG00000005622	-	54	73.438	ENSPPRG00000009507	RBM38	82	88.119	Panthera_pardus
ENSHCOG00000005622	-	54	73.438	ENSPTRG00000013661	RBM38	82	89.109	Pan_troglodytes
ENSHCOG00000005622	-	54	73.438	ENSPANG00000020919	-	82	89.109	Papio_anubis
ENSHCOG00000005622	-	52	60.541	ENSPANG00000033127	-	78	58.378	Papio_anubis
ENSHCOG00000005622	-	56	77.500	ENSPKIG00000025417	rbm38	84	76.585	Paramormyrops_kingsleyae
ENSHCOG00000005622	-	58	77.340	ENSPKIG00000018122	-	95	89.189	Paramormyrops_kingsleyae
ENSHCOG00000005622	-	57	72.195	ENSPSIG00000011649	RBM38	86	71.220	Pelodiscus_sinensis
ENSHCOG00000005622	-	58	69.268	ENSPMGG00000011343	rbm38	81	68.293	Periophthalmus_magnuspinnatus
ENSHCOG00000005622	-	57	83.085	ENSPMGG00000017094	-	85	81.991	Periophthalmus_magnuspinnatus
ENSHCOG00000005622	-	56	72.637	ENSPCIG00000013648	RBM38	84	72.139	Phascolarctos_cinereus
ENSHCOG00000005622	-	57	64.734	ENSPFOG00000011658	rbm38	81	64.423	Poecilia_formosa
ENSHCOG00000005622	-	59	84.541	ENSPLAG00000002500	-	85	84.135	Poecilia_latipinna
ENSHCOG00000005622	-	57	65.700	ENSPLAG00000005218	rbm38	81	63.942	Poecilia_latipinna
ENSHCOG00000005622	-	57	64.734	ENSPMEG00000015770	rbm38	81	64.423	Poecilia_mexicana
ENSHCOG00000005622	-	57	64.734	ENSPREG00000007398	rbm38	81	64.423	Poecilia_reticulata
ENSHCOG00000005622	-	53	73.545	ENSPCOG00000026201	RBM38	81	89.109	Propithecus_coquereli
ENSHCOG00000005622	-	54	47.917	ENSPVAG00000006457	RBM38	80	46.667	Pteropus_vampyrus
ENSHCOG00000005622	-	59	91.262	ENSPNYG00000019727	-	97	96.491	Pundamilia_nyererei
ENSHCOG00000005622	-	59	66.981	ENSPNYG00000021373	rbm38	84	66.038	Pundamilia_nyererei
ENSHCOG00000005622	-	57	83.838	ENSPNAG00000015123	-	96	82.576	Pygocentrus_nattereri
ENSHCOG00000005622	-	59	75.122	ENSPNAG00000010596	rbm38	85	74.146	Pygocentrus_nattereri
ENSHCOG00000005622	-	55	71.066	ENSRNOG00000006420	Rbm38	81	70.051	Rattus_norvegicus
ENSHCOG00000005622	-	54	60.317	ENSRROG00000036388	-	75	63.014	Rhinopithecus_roxellana
ENSHCOG00000005622	-	52	75.135	ENSSBOG00000031053	RBM38	93	89.109	Saimiri_boliviensis_boliviensis
ENSHCOG00000005622	-	59	74.762	ENSSFOG00015004453	rbm38	88	79.426	Scleropages_formosus
ENSHCOG00000005622	-	57	91.919	ENSSDUG00000021082	RBM38	84	90.777	Seriola_dumerili
ENSHCOG00000005622	-	57	72.906	ENSSDUG00000022611	rbm38	81	72.059	Seriola_dumerili
ENSHCOG00000005622	-	57	92.929	ENSSLDG00000011778	RBM38	84	91.748	Seriola_lalandi_dorsalis
ENSHCOG00000005622	-	57	72.906	ENSSLDG00000010845	rbm38	87	71.287	Seriola_lalandi_dorsalis
ENSHCOG00000005622	-	60	67.593	ENSSPAG00000011113	rbm38	81	69.118	Stegastes_partitus
ENSHCOG00000005622	-	57	91.414	ENSSPAG00000020989	RBM38	94	90.821	Stegastes_partitus
ENSHCOG00000005622	-	54	72.396	ENSSSCG00000007504	RBM38	79	71.354	Sus_scrofa
ENSHCOG00000005622	-	57	68.812	ENSTRUG00000024954	rbm38	86	67.290	Takifugu_rubripes
ENSHCOG00000005622	-	57	88.889	ENSTRUG00000019869	-	85	87.500	Takifugu_rubripes
ENSHCOG00000005622	-	56	87.692	ENSTNIG00000007093	-	88	87.692	Tetraodon_nigroviridis
ENSHCOG00000005622	-	54	73.438	ENSUAMG00000019780	RBM38	79	72.396	Ursus_americanus
ENSHCOG00000005622	-	54	73.958	ENSVVUG00000017246	RBM38	79	72.917	Vulpes_vulpes
ENSHCOG00000005622	-	53	72.487	ENSXETG00000011268	rbm38	83	71.429	Xenopus_tropicalis
ENSHCOG00000005622	-	59	64.929	ENSXCOG00000017324	-	62	88.971	Xiphophorus_couchianus
ENSHCOG00000005622	-	57	66.667	ENSXMAG00000023662	rbm38	81	65.196	Xiphophorus_maculatus