EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000006149 (Gene tree)
Gene ID: 109516402
Gene Symbol: polr2f
Alias: zgc:92790
Full Name: RNA polymerase II subunit F
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 1733 bases
Position: chrKV879957.1:170312-172044
Accession: 109516402
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000004669	RNA_pol_Rpb6	PF01192.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000006684	-	752	XM_019870925	ENSHCOP00000004669	127 (aa)	XP_019726484	UPI00094E8ECF

Gene Model

Click here to download ENSHCOG00000006149's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03020	RNA polymerase	KEGG
hcq04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000006149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000006149	polr2f	100	86.614	ENSG00000100142	POLR2F	100	87.755	Homo_sapiens
ENSHCOG00000006149	polr2f	100	93.701	ENSAPOG00000002902	polr2f	100	93.701	Acanthochromis_polyacanthus
ENSHCOG00000006149	polr2f	100	85.827	ENSAMEG00000010331	POLR2F	100	85.827	Ailuropoda_melanoleuca
ENSHCOG00000006149	polr2f	100	95.276	ENSACIG00000000923	polr2f	100	95.276	Amphilophus_citrinellus
ENSHCOG00000006149	polr2f	100	94.488	ENSAOCG00000003182	polr2f	100	94.488	Amphiprion_ocellaris
ENSHCOG00000006149	polr2f	100	94.488	ENSAPEG00000012999	polr2f	100	94.488	Amphiprion_percula
ENSHCOG00000006149	polr2f	100	95.276	ENSATEG00000008929	polr2f	100	95.276	Anabas_testudineus
ENSHCOG00000006149	polr2f	80	86.139	ENSAPLG00000015235	POLR2F	85	85.849	Anas_platyrhynchos
ENSHCOG00000006149	polr2f	100	87.402	ENSACAG00000015288	POLR2F	100	87.402	Anolis_carolinensis
ENSHCOG00000006149	polr2f	100	86.614	ENSANAG00000020840	POLR2F	100	86.614	Aotus_nancymaae
ENSHCOG00000006149	polr2f	100	96.063	ENSACLG00000016129	polr2f	100	96.063	Astatotilapia_calliptera
ENSHCOG00000006149	polr2f	100	93.701	ENSAMXG00000012812	polr2f	100	93.701	Astyanax_mexicanus
ENSHCOG00000006149	polr2f	100	86.614	ENSBTAG00000004820	POLR2F	100	86.614	Bos_taurus
ENSHCOG00000006149	polr2f	63	73.750	WBGene00007355	rpb-6	73	65.347	Caenorhabditis_elegans
ENSHCOG00000006149	polr2f	100	86.614	ENSCJAG00000048241	POLR2F	100	86.614	Callithrix_jacchus
ENSHCOG00000006149	polr2f	100	85.827	ENSCAFG00000001437	POLR2F	100	85.827	Canis_familiaris
ENSHCOG00000006149	polr2f	83	86.792	ENSCHIG00000012907	POLR2F	83	86.792	Capra_hircus
ENSHCOG00000006149	polr2f	100	85.827	ENSTSYG00000008187	POLR2F	100	85.827	Carlito_syrichta
ENSHCOG00000006149	polr2f	83	86.792	ENSCAPG00000013419	POLR2F	83	86.792	Cavia_aperea
ENSHCOG00000006149	polr2f	100	86.614	ENSCPOG00000034094	POLR2F	100	86.614	Cavia_porcellus
ENSHCOG00000006149	polr2f	100	86.614	ENSCCAG00000036489	POLR2F	100	86.614	Cebus_capucinus
ENSHCOG00000006149	polr2f	100	86.614	ENSCATG00000041014	POLR2F	100	86.614	Cercocebus_atys
ENSHCOG00000006149	polr2f	100	86.614	ENSCLAG00000017167	POLR2F	100	86.614	Chinchilla_lanigera
ENSHCOG00000006149	polr2f	100	86.614	ENSCSAG00000006862	POLR2F	100	86.614	Chlorocebus_sabaeus
ENSHCOG00000006149	polr2f	83	87.736	ENSCPBG00000023030	POLR2F	54	87.736	Chrysemys_picta_bellii
ENSHCOG00000006149	polr2f	80	72.549	ENSCING00000019359	-	72	72.549	Ciona_intestinalis
ENSHCOG00000006149	polr2f	100	86.614	ENSCANG00000041884	POLR2F	100	86.614	Colobus_angolensis_palliatus
ENSHCOG00000006149	polr2f	100	86.614	ENSCGRG00001023541	POLR2F	100	86.614	Cricetulus_griseus_chok1gshd
ENSHCOG00000006149	polr2f	100	86.614	ENSCGRG00000011921	POLR2F	100	86.614	Cricetulus_griseus_crigri
ENSHCOG00000006149	polr2f	83	93.396	ENSCSEG00000006848	polr2f	83	93.396	Cynoglossus_semilaevis
ENSHCOG00000006149	polr2f	100	92.913	ENSCVAG00000010437	polr2f	100	92.913	Cyprinodon_variegatus
ENSHCOG00000006149	polr2f	100	91.339	ENSDARG00000036625	polr2f	100	91.339	Danio_rerio
ENSHCOG00000006149	polr2f	100	86.614	ENSDNOG00000005884	POLR2F	100	86.614	Dasypus_novemcinctus
ENSHCOG00000006149	polr2f	100	86.614	ENSDORG00000024789	Polr2f	100	86.614	Dipodomys_ordii
ENSHCOG00000006149	polr2f	63	83.750	FBgn0003275	RpII18	74	74.227	Drosophila_melanogaster
ENSHCOG00000006149	polr2f	77	67.347	ENSEBUG00000002842	-	90	64.423	Eptatretus_burgeri
ENSHCOG00000006149	polr2f	54	82.353	ENSEBUG00000008509	polr2f	70	82.353	Eptatretus_burgeri
ENSHCOG00000006149	polr2f	60	86.842	ENSEASG00005018802	-	68	86.842	Equus_asinus_asinus
ENSHCOG00000006149	polr2f	100	85.039	ENSEEUG00000011014	POLR2F	100	85.039	Erinaceus_europaeus
ENSHCOG00000006149	polr2f	100	93.701	ENSELUG00000000319	polr2f	100	93.701	Esox_lucius
ENSHCOG00000006149	polr2f	100	85.827	ENSFCAG00000002806	POLR2F	100	85.827	Felis_catus
ENSHCOG00000006149	polr2f	100	86.614	ENSFDAG00000009926	POLR2F	100	86.614	Fukomys_damarensis
ENSHCOG00000006149	polr2f	88	91.964	ENSFHEG00000005448	polr2f	84	91.509	Fundulus_heteroclitus
ENSHCOG00000006149	polr2f	100	86.614	ENSGMOG00000009967	polr2f	100	86.614	Gadus_morhua
ENSHCOG00000006149	polr2f	100	85.827	ENSGALG00000012291	POLR2F	100	85.827	Gallus_gallus
ENSHCOG00000006149	polr2f	100	92.913	ENSGAFG00000017573	polr2f	100	92.913	Gambusia_affinis
ENSHCOG00000006149	polr2f	100	89.764	ENSGACG00000007322	polr2f	100	89.764	Gasterosteus_aculeatus
ENSHCOG00000006149	polr2f	100	87.402	ENSGAGG00000021757	POLR2F	100	87.402	Gopherus_agassizii
ENSHCOG00000006149	polr2f	100	86.614	ENSGGOG00000005213	POLR2F	100	86.614	Gorilla_gorilla
ENSHCOG00000006149	polr2f	100	96.063	ENSHBUG00000022089	polr2f	100	96.063	Haplochromis_burtoni
ENSHCOG00000006149	polr2f	100	86.614	ENSHGLG00000018942	POLR2F	100	86.614	Heterocephalus_glaber_female
ENSHCOG00000006149	polr2f	100	86.614	ENSHGLG00100012851	POLR2F	100	86.614	Heterocephalus_glaber_male
ENSHCOG00000006149	polr2f	76	93.814	ENSIPUG00000000814	polr2f	100	93.814	Ictalurus_punctatus
ENSHCOG00000006149	polr2f	100	86.614	ENSSTOG00000025722	POLR2F	100	86.614	Ictidomys_tridecemlineatus
ENSHCOG00000006149	polr2f	100	86.614	ENSJJAG00000008097	Polr2f	100	86.614	Jaculus_jaculus
ENSHCOG00000006149	polr2f	100	93.701	ENSKMAG00000014230	polr2f	100	93.701	Kryptolebias_marmoratus
ENSHCOG00000006149	polr2f	90	91.228	ENSLBEG00000008383	polr2f	95	91.228	Labrus_bergylta
ENSHCOG00000006149	polr2f	100	88.976	ENSLACG00000003931	POLR2F	100	88.976	Latimeria_chalumnae
ENSHCOG00000006149	polr2f	100	91.538	ENSLOCG00000011827	polr2f	100	91.538	Lepisosteus_oculatus
ENSHCOG00000006149	polr2f	100	86.614	ENSLAFG00000012632	POLR2F	100	86.614	Loxodonta_africana
ENSHCOG00000006149	polr2f	100	86.614	ENSMFAG00000033687	POLR2F	100	86.614	Macaca_fascicularis
ENSHCOG00000006149	polr2f	83	86.792	ENSMMUG00000038231	POLR2F	87	86.792	Macaca_mulatta
ENSHCOG00000006149	polr2f	100	86.614	ENSMNEG00000044365	POLR2F	100	86.614	Macaca_nemestrina
ENSHCOG00000006149	polr2f	100	86.614	ENSMLEG00000033077	POLR2F	100	86.614	Mandrillus_leucophaeus
ENSHCOG00000006149	polr2f	100	94.488	ENSMAMG00000008056	polr2f	100	94.488	Mastacembelus_armatus
ENSHCOG00000006149	polr2f	100	96.063	ENSMZEG00005005705	polr2f	100	96.063	Maylandia_zebra
ENSHCOG00000006149	polr2f	100	85.827	ENSMGAG00000012504	POLR2F	100	85.827	Meleagris_gallopavo
ENSHCOG00000006149	polr2f	100	86.614	ENSMAUG00000018586	Polr2f	100	86.614	Mesocricetus_auratus
ENSHCOG00000006149	polr2f	100	86.614	ENSMICG00000013128	POLR2F	100	86.614	Microcebus_murinus
ENSHCOG00000006149	polr2f	100	86.614	ENSMOCG00000000237	Polr2f	100	86.614	Microtus_ochrogaster
ENSHCOG00000006149	polr2f	100	94.488	ENSMMOG00000005106	polr2f	100	94.488	Mola_mola
ENSHCOG00000006149	polr2f	100	85.827	ENSMODG00000019063	POLR2F	100	85.827	Monodelphis_domestica
ENSHCOG00000006149	polr2f	100	94.488	ENSMALG00000001444	polr2f	100	94.488	Monopterus_albus
ENSHCOG00000006149	polr2f	100	86.614	MGP_CAROLIEiJ_G0020006	Polr2f	100	86.614	Mus_caroli
ENSHCOG00000006149	polr2f	100	86.614	ENSMUSG00000033020	Polr2f	100	87.755	Mus_musculus
ENSHCOG00000006149	polr2f	100	86.614	MGP_PahariEiJ_G0020008	Polr2f	100	86.614	Mus_pahari
ENSHCOG00000006149	polr2f	100	86.614	MGP_SPRETEiJ_G0020904	Polr2f	100	86.614	Mus_spretus
ENSHCOG00000006149	polr2f	100	85.827	ENSMPUG00000012997	POLR2F	100	85.827	Mustela_putorius_furo
ENSHCOG00000006149	polr2f	98	81.452	ENSMLUG00000029612	-	100	80.159	Myotis_lucifugus
ENSHCOG00000006149	polr2f	100	84.496	ENSMLUG00000014315	-	100	84.496	Myotis_lucifugus
ENSHCOG00000006149	polr2f	100	86.614	ENSNGAG00000020682	Polr2f	100	86.614	Nannospalax_galili
ENSHCOG00000006149	polr2f	100	95.276	ENSNBRG00000002492	polr2f	100	95.276	Neolamprologus_brichardi
ENSHCOG00000006149	polr2f	100	86.614	ENSNLEG00000014987	-	100	86.614	Nomascus_leucogenys
ENSHCOG00000006149	polr2f	100	86.614	ENSODEG00000014123	POLR2F	100	86.614	Octodon_degus
ENSHCOG00000006149	polr2f	100	95.276	ENSONIG00000008394	polr2f	100	95.276	Oreochromis_niloticus
ENSHCOG00000006149	polr2f	100	87.402	ENSOANG00000014684	POLR2F	100	87.402	Ornithorhynchus_anatinus
ENSHCOG00000006149	polr2f	100	86.614	ENSOCUG00000012064	POLR2F	100	86.614	Oryctolagus_cuniculus
ENSHCOG00000006149	polr2f	100	92.126	ENSORLG00000014580	polr2f	100	92.126	Oryzias_latipes
ENSHCOG00000006149	polr2f	100	92.913	ENSORLG00020006910	polr2f	100	92.913	Oryzias_latipes_hni
ENSHCOG00000006149	polr2f	90	91.228	ENSORLG00015015332	polr2f	77	91.228	Oryzias_latipes_hsok
ENSHCOG00000006149	polr2f	87	87.273	ENSOMEG00000006530	polr2f	65	87.273	Oryzias_melastigma
ENSHCOG00000006149	polr2f	100	86.614	ENSOGAG00000025463	POLR2F	100	86.614	Otolemur_garnettii
ENSHCOG00000006149	polr2f	100	86.614	ENSOARG00000014692	POLR2F	100	86.614	Ovis_aries
ENSHCOG00000006149	polr2f	100	86.614	ENSPPAG00000024276	POLR2F	100	86.614	Pan_paniscus
ENSHCOG00000006149	polr2f	100	85.827	ENSPPRG00000013030	POLR2F	100	85.827	Panthera_pardus
ENSHCOG00000006149	polr2f	82	86.538	ENSPTIG00000000632	POLR2F	85	86.538	Panthera_tigris_altaica
ENSHCOG00000006149	polr2f	100	86.614	ENSPTRG00000014356	POLR2F	100	86.614	Pan_troglodytes
ENSHCOG00000006149	polr2f	100	86.614	ENSPANG00000023979	POLR2F	100	86.614	Papio_anubis
ENSHCOG00000006149	polr2f	100	93.701	ENSPKIG00000002464	polr2f	100	93.701	Paramormyrops_kingsleyae
ENSHCOG00000006149	polr2f	56	91.549	ENSPSIG00000013913	POLR2F	100	91.549	Pelodiscus_sinensis
ENSHCOG00000006149	polr2f	100	94.488	ENSPMGG00000009619	polr2f	100	94.488	Periophthalmus_magnuspinnatus
ENSHCOG00000006149	polr2f	100	86.614	ENSPEMG00000008322	Polr2f	100	86.614	Peromyscus_maniculatus_bairdii
ENSHCOG00000006149	polr2f	100	85.827	ENSPCIG00000012000	-	100	85.827	Phascolarctos_cinereus
ENSHCOG00000006149	polr2f	100	92.913	ENSPFOG00000000139	polr2f	100	92.913	Poecilia_formosa
ENSHCOG00000006149	polr2f	100	92.913	ENSPLAG00000000988	polr2f	100	92.913	Poecilia_latipinna
ENSHCOG00000006149	polr2f	100	92.913	ENSPMEG00000019063	polr2f	100	92.913	Poecilia_mexicana
ENSHCOG00000006149	polr2f	77	95.918	ENSPREG00000016749	polr2f	100	95.918	Poecilia_reticulata
ENSHCOG00000006149	polr2f	100	86.614	ENSPPYG00000011809	POLR2F	100	86.614	Pongo_abelii
ENSHCOG00000006149	polr2f	100	86.614	ENSPCOG00000025716	POLR2F	100	86.614	Propithecus_coquereli
ENSHCOG00000006149	polr2f	76	87.629	ENSPVAG00000010107	POLR2F	62	87.629	Pteropus_vampyrus
ENSHCOG00000006149	polr2f	100	96.063	ENSPNYG00000019790	polr2f	100	96.063	Pundamilia_nyererei
ENSHCOG00000006149	polr2f	100	93.701	ENSPNAG00000009017	polr2f	100	93.701	Pygocentrus_nattereri
ENSHCOG00000006149	polr2f	100	86.614	ENSRNOG00000011214	Polr2f	100	86.614	Rattus_norvegicus
ENSHCOG00000006149	polr2f	100	86.614	ENSRBIG00000044878	POLR2F	100	86.614	Rhinopithecus_bieti
ENSHCOG00000006149	polr2f	100	86.614	ENSRROG00000019586	POLR2F	100	86.614	Rhinopithecus_roxellana
ENSHCOG00000006149	polr2f	99	49.351	YPR187W	RPO26	66	61.765	Saccharomyces_cerevisiae
ENSHCOG00000006149	polr2f	100	86.614	ENSSBOG00000023340	POLR2F	100	86.614	Saimiri_boliviensis_boliviensis
ENSHCOG00000006149	polr2f	100	85.827	ENSSHAG00000008502	POLR2F	100	85.827	Sarcophilus_harrisii
ENSHCOG00000006149	polr2f	100	95.276	ENSSFOG00015012810	polr2f	100	95.276	Scleropages_formosus
ENSHCOG00000006149	polr2f	100	93.701	ENSSMAG00000005354	polr2f	100	93.701	Scophthalmus_maximus
ENSHCOG00000006149	polr2f	100	94.488	ENSSDUG00000016273	polr2f	100	94.488	Seriola_dumerili
ENSHCOG00000006149	polr2f	100	94.488	ENSSLDG00000024895	polr2f	100	94.488	Seriola_lalandi_dorsalis
ENSHCOG00000006149	polr2f	100	87.402	ENSSPUG00000011343	POLR2F	100	87.402	Sphenodon_punctatus
ENSHCOG00000006149	polr2f	100	96.063	ENSSPAG00000019646	polr2f	100	96.063	Stegastes_partitus
ENSHCOG00000006149	polr2f	100	86.614	ENSSSCG00000000116	POLR2F	100	86.614	Sus_scrofa
ENSHCOG00000006149	polr2f	80	87.129	ENSTGUG00000010476	POLR2F	93	86.614	Taeniopygia_guttata
ENSHCOG00000006149	polr2f	57	88.889	ENSTGUG00000016504	-	88	88.312	Taeniopygia_guttata
ENSHCOG00000006149	polr2f	100	94.488	ENSTRUG00000021130	polr2f	71	94.488	Takifugu_rubripes
ENSHCOG00000006149	polr2f	100	93.701	ENSTNIG00000010827	polr2f	100	93.701	Tetraodon_nigroviridis
ENSHCOG00000006149	polr2f	76	87.629	ENSTTRG00000004817	POLR2F	62	87.629	Tursiops_truncatus
ENSHCOG00000006149	polr2f	100	85.827	ENSUAMG00000020504	POLR2F	100	85.827	Ursus_americanus
ENSHCOG00000006149	polr2f	100	85.827	ENSUMAG00000015052	POLR2F	100	85.827	Ursus_maritimus
ENSHCOG00000006149	polr2f	83	85.849	ENSVVUG00000024021	POLR2F	80	85.849	Vulpes_vulpes
ENSHCOG00000006149	polr2f	100	88.976	ENSXETG00000006346	polr2f	100	88.976	Xenopus_tropicalis
ENSHCOG00000006149	polr2f	100	92.913	ENSXCOG00000015983	polr2f	100	92.913	Xiphophorus_couchianus
ENSHCOG00000006149	polr2f	100	92.913	ENSXMAG00000001559	polr2f	100	92.913	Xiphophorus_maculatus