EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000006501 (Gene tree)
Gene ID: 109531112
Gene Symbol: cnot1
Alias: cdc39-like|im:7141761|kiaa1007l|wu:fc58h04|zgc:152902
Full Name: CCR4-NOT transcription complex subunit 1
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 20407 bases
Position: chrKV879791.1:309823-330229
Accession: 109531112
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000020463	Not1	PF04054.15	3.6e-143	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000006310	-	7104	XM_019895213	ENSHCOP00000020463	2367 (aa)	XP_019750772	-

Gene Model

Click here to download ENSHCOG00000006501's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000006501's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000006501	cnot1	100	89.749	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSHCOG00000006501	cnot1	100	93.085	ENSAPOG00000005042	cnot1	100	93.085	Acanthochromis_polyacanthus
ENSHCOG00000006501	cnot1	100	89.791	ENSAMEG00000017298	CNOT1	100	89.652	Ailuropoda_melanoleuca
ENSHCOG00000006501	cnot1	90	93.820	ENSACIG00000016003	cnot1	100	93.652	Amphilophus_citrinellus
ENSHCOG00000006501	cnot1	100	94.885	ENSAPEG00000022342	cnot1	100	94.969	Amphiprion_percula
ENSHCOG00000006501	cnot1	100	93.090	ENSATEG00000012892	cnot1	100	93.090	Anabas_testudineus
ENSHCOG00000006501	cnot1	100	89.357	ENSAPLG00000007162	CNOT1	100	89.065	Anas_platyrhynchos
ENSHCOG00000006501	cnot1	91	88.587	ENSACAG00000001602	CNOT1	98	88.500	Anolis_carolinensis
ENSHCOG00000006501	cnot1	100	86.861	ENSANAG00000038198	CNOT1	100	86.719	Aotus_nancymaae
ENSHCOG00000006501	cnot1	100	93.210	ENSACLG00000014234	cnot1	100	93.210	Astatotilapia_calliptera
ENSHCOG00000006501	cnot1	100	93.249	ENSAMXG00000013170	cnot1	100	93.459	Astyanax_mexicanus
ENSHCOG00000006501	cnot1	95	95.020	ENSBTAG00000020782	CNOT1	100	95.020	Bos_taurus
ENSHCOG00000006501	cnot1	81	40.759	WBGene00002845	let-711	92	53.586	Caenorhabditis_elegans
ENSHCOG00000006501	cnot1	100	89.478	ENSCJAG00000011318	CNOT1	100	91.289	Callithrix_jacchus
ENSHCOG00000006501	cnot1	100	89.208	ENSCAFG00000008426	CNOT1	100	89.070	Canis_familiaris
ENSHCOG00000006501	cnot1	100	88.602	ENSCAFG00020010156	CNOT1	100	92.063	Canis_lupus_dingo
ENSHCOG00000006501	cnot1	100	89.645	ENSCHIG00000010452	CNOT1	100	89.507	Capra_hircus
ENSHCOG00000006501	cnot1	100	89.603	ENSTSYG00000006888	CNOT1	100	89.465	Carlito_syrichta
ENSHCOG00000006501	cnot1	100	85.678	ENSCPOG00000013026	CNOT1	100	85.219	Cavia_porcellus
ENSHCOG00000006501	cnot1	100	87.975	ENSCCAG00000026333	CNOT1	100	87.834	Cebus_capucinus
ENSHCOG00000006501	cnot1	100	89.562	ENSCATG00000032625	CNOT1	100	89.423	Cercocebus_atys
ENSHCOG00000006501	cnot1	100	89.562	ENSCLAG00000006289	CNOT1	100	89.465	Chinchilla_lanigera
ENSHCOG00000006501	cnot1	100	89.562	ENSCSAG00000004731	CNOT1	100	89.423	Chlorocebus_sabaeus
ENSHCOG00000006501	cnot1	78	98.701	ENSCHOG00000009712	CNOT1	80	98.701	Choloepus_hoffmanni
ENSHCOG00000006501	cnot1	93	94.466	ENSCPBG00000026222	CNOT1	98	94.466	Chrysemys_picta_bellii
ENSHCOG00000006501	cnot1	100	58.306	ENSCING00000009149	-	100	58.375	Ciona_intestinalis
ENSHCOG00000006501	cnot1	89	62.220	ENSCSAVG00000002414	-	96	70.857	Ciona_savignyi
ENSHCOG00000006501	cnot1	100	88.071	ENSCANG00000040534	CNOT1	100	87.932	Colobus_angolensis_palliatus
ENSHCOG00000006501	cnot1	100	89.432	ENSCGRG00001016365	Cnot1	100	89.256	Cricetulus_griseus_chok1gshd
ENSHCOG00000006501	cnot1	100	89.432	ENSCGRG00000001714	Cnot1	100	89.256	Cricetulus_griseus_crigri
ENSHCOG00000006501	cnot1	97	97.346	ENSCVAG00000018930	cnot1	100	97.346	Cyprinodon_variegatus
ENSHCOG00000006501	cnot1	100	92.878	ENSDARG00000004174	cnot1	100	92.833	Danio_rerio
ENSHCOG00000006501	cnot1	100	87.714	ENSDNOG00000013250	CNOT1	100	87.380	Dasypus_novemcinctus
ENSHCOG00000006501	cnot1	99	45.120	FBgn0085436	Not1	99	47.421	Drosophila_melanogaster
ENSHCOG00000006501	cnot1	82	93.827	ENSETEG00000012806	CNOT1	82	93.827	Echinops_telfairi
ENSHCOG00000006501	cnot1	81	75.334	ENSEBUG00000011534	cnot1	95	75.334	Eptatretus_burgeri
ENSHCOG00000006501	cnot1	95	95.020	ENSEASG00005005819	CNOT1	100	95.020	Equus_asinus_asinus
ENSHCOG00000006501	cnot1	100	89.562	ENSECAG00000009889	CNOT1	100	89.423	Equus_caballus
ENSHCOG00000006501	cnot1	87	94.903	ENSEEUG00000006015	CNOT1	90	88.203	Erinaceus_europaeus
ENSHCOG00000006501	cnot1	100	93.675	ENSELUG00000014085	cnot1	100	93.427	Esox_lucius
ENSHCOG00000006501	cnot1	100	89.342	ENSFCAG00000025155	CNOT1	100	89.204	Felis_catus
ENSHCOG00000006501	cnot1	100	89.590	ENSFALG00000007285	CNOT1	100	89.298	Ficedula_albicollis
ENSHCOG00000006501	cnot1	100	89.520	ENSFDAG00000013399	CNOT1	100	89.423	Fukomys_damarensis
ENSHCOG00000006501	cnot1	100	93.889	ENSFHEG00000020574	cnot1	100	94.014	Fundulus_heteroclitus
ENSHCOG00000006501	cnot1	91	94.306	ENSGMOG00000012864	cnot1	100	94.306	Gadus_morhua
ENSHCOG00000006501	cnot1	100	89.381	ENSGALG00000002301	CNOT1	100	89.089	Gallus_gallus
ENSHCOG00000006501	cnot1	100	92.617	ENSGAFG00000015005	cnot1	100	92.701	Gambusia_affinis
ENSHCOG00000006501	cnot1	91	95.974	ENSGACG00000002606	cnot1	100	97.947	Gasterosteus_aculeatus
ENSHCOG00000006501	cnot1	100	89.674	ENSGAGG00000022646	CNOT1	100	90.534	Gopherus_agassizii
ENSHCOG00000006501	cnot1	100	89.520	ENSGGOG00000009547	CNOT1	100	89.381	Gorilla_gorilla
ENSHCOG00000006501	cnot1	100	93.210	ENSHBUG00000001729	cnot1	100	93.210	Haplochromis_burtoni
ENSHCOG00000006501	cnot1	100	89.436	ENSHGLG00000014322	CNOT1	100	89.339	Heterocephalus_glaber_female
ENSHCOG00000006501	cnot1	100	91.464	ENSIPUG00000011915	cnot1	100	91.464	Ictalurus_punctatus
ENSHCOG00000006501	cnot1	100	89.395	ENSSTOG00000005490	CNOT1	100	89.298	Ictidomys_tridecemlineatus
ENSHCOG00000006501	cnot1	100	88.935	ENSJJAG00000000633	Cnot1	100	88.796	Jaculus_jaculus
ENSHCOG00000006501	cnot1	100	94.847	ENSKMAG00000006149	cnot1	100	94.931	Kryptolebias_marmoratus
ENSHCOG00000006501	cnot1	95	97.410	ENSLBEG00000004740	cnot1	100	97.410	Labrus_bergylta
ENSHCOG00000006501	cnot1	100	89.921	ENSLACG00000010869	CNOT1	100	89.670	Latimeria_chalumnae
ENSHCOG00000006501	cnot1	100	93.004	ENSLOCG00000006324	cnot1	100	92.920	Lepisosteus_oculatus
ENSHCOG00000006501	cnot1	100	89.445	ENSLAFG00000000098	CNOT1	100	89.307	Loxodonta_africana
ENSHCOG00000006501	cnot1	100	89.749	ENSMFAG00000035888	CNOT1	100	89.610	Macaca_fascicularis
ENSHCOG00000006501	cnot1	100	89.520	ENSMMUG00000014625	CNOT1	94	97.101	Macaca_mulatta
ENSHCOG00000006501	cnot1	100	87.000	ENSMNEG00000031820	CNOT1	100	89.013	Macaca_nemestrina
ENSHCOG00000006501	cnot1	100	88.218	ENSMLEG00000040933	CNOT1	100	88.078	Mandrillus_leucophaeus
ENSHCOG00000006501	cnot1	100	93.163	ENSMAMG00000016524	cnot1	100	93.331	Mastacembelus_armatus
ENSHCOG00000006501	cnot1	100	89.703	ENSMZEG00005016210	cnot1	100	89.828	Maylandia_zebra
ENSHCOG00000006501	cnot1	100	89.610	ENSMGAG00000001908	CNOT1	100	89.317	Meleagris_gallopavo
ENSHCOG00000006501	cnot1	100	89.745	ENSMICG00000007071	CNOT1	100	89.703	Microcebus_murinus
ENSHCOG00000006501	cnot1	100	89.311	ENSMOCG00000017969	Cnot1	100	89.172	Microtus_ochrogaster
ENSHCOG00000006501	cnot1	100	91.789	ENSMMOG00000019134	cnot1	100	91.915	Mola_mola
ENSHCOG00000006501	cnot1	100	89.274	ENSMODG00000014199	CNOT1	100	89.177	Monodelphis_domestica
ENSHCOG00000006501	cnot1	100	93.962	ENSMALG00000008645	cnot1	100	93.962	Monopterus_albus
ENSHCOG00000006501	cnot1	95	96.190	MGP_CAROLIEiJ_G0031430	Cnot1	92	96.190	Mus_caroli
ENSHCOG00000006501	cnot1	100	89.456	ENSMUSG00000036550	Cnot1	100	89.317	Mus_musculus
ENSHCOG00000006501	cnot1	100	89.353	MGP_PahariEiJ_G0023028	Cnot1	100	89.214	Mus_pahari
ENSHCOG00000006501	cnot1	100	89.353	MGP_SPRETEiJ_G0032549	Cnot1	100	89.214	Mus_spretus
ENSHCOG00000006501	cnot1	100	89.603	ENSMPUG00000004830	CNOT1	100	89.465	Mustela_putorius_furo
ENSHCOG00000006501	cnot1	100	89.520	ENSMLUG00000003728	CNOT1	100	89.339	Myotis_lucifugus
ENSHCOG00000006501	cnot1	100	89.395	ENSNGAG00000018628	Cnot1	100	89.256	Nannospalax_galili
ENSHCOG00000006501	cnot1	97	87.051	ENSNBRG00000019358	cnot1	100	87.051	Neolamprologus_brichardi
ENSHCOG00000006501	cnot1	100	89.599	ENSNLEG00000003566	CNOT1	100	89.460	Nomascus_leucogenys
ENSHCOG00000006501	cnot1	87	90.278	ENSMEUG00000006145	CNOT1	87	90.278	Notamacropus_eugenii
ENSHCOG00000006501	cnot1	86	97.087	ENSOPRG00000005604	CNOT1	86	97.087	Ochotona_princeps
ENSHCOG00000006501	cnot1	100	89.478	ENSODEG00000016337	CNOT1	100	89.381	Octodon_degus
ENSHCOG00000006501	cnot1	100	94.969	ENSONIG00000007358	cnot1	100	94.969	Oreochromis_niloticus
ENSHCOG00000006501	cnot1	91	88.868	ENSOANG00000012109	CNOT1	100	88.801	Ornithorhynchus_anatinus
ENSHCOG00000006501	cnot1	100	89.520	ENSOCUG00000006911	CNOT1	100	89.423	Oryctolagus_cuniculus
ENSHCOG00000006501	cnot1	100	94.558	ENSORLG00000013734	cnot1	100	94.684	Oryzias_latipes
ENSHCOG00000006501	cnot1	100	92.953	ENSORLG00020017012	cnot1	100	93.079	Oryzias_latipes_hni
ENSHCOG00000006501	cnot1	100	92.869	ENSORLG00015007091	cnot1	100	92.995	Oryzias_latipes_hsok
ENSHCOG00000006501	cnot1	100	92.295	ENSOMEG00000015124	cnot1	100	91.848	Oryzias_melastigma
ENSHCOG00000006501	cnot1	100	89.645	ENSOGAG00000000543	CNOT1	100	89.507	Otolemur_garnettii
ENSHCOG00000006501	cnot1	100	89.645	ENSOARG00000001567	CNOT1	100	89.507	Ovis_aries
ENSHCOG00000006501	cnot1	100	89.562	ENSPPAG00000022013	CNOT1	100	89.423	Pan_paniscus
ENSHCOG00000006501	cnot1	100	89.603	ENSPPRG00000004867	CNOT1	100	89.465	Panthera_pardus
ENSHCOG00000006501	cnot1	100	89.603	ENSPTIG00000012589	CNOT1	100	89.465	Panthera_tigris_altaica
ENSHCOG00000006501	cnot1	100	89.301	ENSPTRG00000008183	CNOT1	100	89.162	Pan_troglodytes
ENSHCOG00000006501	cnot1	100	86.314	ENSPANG00000020901	CNOT1	100	86.172	Papio_anubis
ENSHCOG00000006501	cnot1	100	86.763	ENSPKIG00000002914	CNOT1	100	86.534	Paramormyrops_kingsleyae
ENSHCOG00000006501	cnot1	100	93.378	ENSPKIG00000023538	CNOT1	100	93.294	Paramormyrops_kingsleyae
ENSHCOG00000006501	cnot1	100	89.423	ENSPSIG00000005499	CNOT1	100	89.256	Pelodiscus_sinensis
ENSHCOG00000006501	cnot1	100	78.721	ENSPMAG00000009381	cnot1	100	78.366	Petromyzon_marinus
ENSHCOG00000006501	cnot1	95	95.219	ENSPCIG00000007343	CNOT1	100	95.219	Phascolarctos_cinereus
ENSHCOG00000006501	cnot1	99	93.996	ENSPFOG00000003497	cnot1	100	93.911	Poecilia_formosa
ENSHCOG00000006501	cnot1	95	96.813	ENSPLAG00000014018	cnot1	100	96.813	Poecilia_latipinna
ENSHCOG00000006501	cnot1	95	96.813	ENSPMEG00000005868	cnot1	100	96.813	Poecilia_mexicana
ENSHCOG00000006501	cnot1	95	96.813	ENSPREG00000018793	cnot1	100	96.813	Poecilia_reticulata
ENSHCOG00000006501	cnot1	100	89.603	ENSPPYG00000007410	CNOT1	100	89.465	Pongo_abelii
ENSHCOG00000006501	cnot1	87	87.302	ENSPCAG00000003241	CNOT1	88	87.302	Procavia_capensis
ENSHCOG00000006501	cnot1	100	89.441	ENSPCOG00000027139	CNOT1	100	89.399	Propithecus_coquereli
ENSHCOG00000006501	cnot1	100	86.931	ENSPVAG00000004243	CNOT1	100	87.040	Pteropus_vampyrus
ENSHCOG00000006501	cnot1	100	91.488	ENSPNYG00000012919	cnot1	100	91.614	Pundamilia_nyererei
ENSHCOG00000006501	cnot1	100	92.027	ENSPNAG00000000246	cnot1	100	92.027	Pygocentrus_nattereri
ENSHCOG00000006501	cnot1	100	89.311	ENSRNOG00000012271	Cnot1	100	89.172	Rattus_norvegicus
ENSHCOG00000006501	cnot1	100	87.505	ENSRBIG00000044598	CNOT1	100	87.364	Rhinopithecus_bieti
ENSHCOG00000006501	cnot1	100	89.562	ENSRROG00000000906	CNOT1	100	89.423	Rhinopithecus_roxellana
ENSHCOG00000006501	cnot1	56	31.188	YCR093W	CDC39	61	33.333	Saccharomyces_cerevisiae
ENSHCOG00000006501	cnot1	100	85.405	ENSSBOG00000029155	CNOT1	100	85.262	Saimiri_boliviensis_boliviensis
ENSHCOG00000006501	cnot1	100	89.311	ENSSHAG00000012187	CNOT1	100	89.172	Sarcophilus_harrisii
ENSHCOG00000006501	cnot1	100	91.308	ENSSFOG00015017614	cnot1	100	90.974	Scleropages_formosus
ENSHCOG00000006501	cnot1	100	95.029	ENSSMAG00000013844	cnot1	100	95.319	Scophthalmus_maximus
ENSHCOG00000006501	cnot1	100	93.049	ENSSDUG00000021491	cnot1	100	93.049	Seriola_dumerili
ENSHCOG00000006501	cnot1	100	96.244	ENSSLDG00000014816	cnot1	100	96.244	Seriola_lalandi_dorsalis
ENSHCOG00000006501	cnot1	77	96.806	ENSSARG00000000762	CNOT1	88	96.806	Sorex_araneus
ENSHCOG00000006501	cnot1	100	94.507	ENSSPAG00000018802	cnot1	100	95.052	Stegastes_partitus
ENSHCOG00000006501	cnot1	95	95.020	ENSSSCG00000002799	CNOT1	100	95.020	Sus_scrofa
ENSHCOG00000006501	cnot1	100	89.436	ENSTGUG00000005919	CNOT1	100	89.144	Taeniopygia_guttata
ENSHCOG00000006501	cnot1	100	93.403	ENSTNIG00000018706	cnot1	100	93.408	Tetraodon_nigroviridis
ENSHCOG00000006501	cnot1	81	97.183	ENSTBEG00000000720	CNOT1	80	97.183	Tupaia_belangeri
ENSHCOG00000006501	cnot1	93	93.396	ENSTTRG00000008460	CNOT1	93	93.396	Tursiops_truncatus
ENSHCOG00000006501	cnot1	100	89.603	ENSUAMG00000009251	CNOT1	100	89.465	Ursus_americanus
ENSHCOG00000006501	cnot1	100	89.603	ENSUMAG00000021291	CNOT1	100	89.465	Ursus_maritimus
ENSHCOG00000006501	cnot1	97	90.507	ENSVPAG00000008846	CNOT1	97	90.507	Vicugna_pacos
ENSHCOG00000006501	cnot1	100	88.602	ENSVVUG00000024037	CNOT1	100	92.063	Vulpes_vulpes
ENSHCOG00000006501	cnot1	100	84.217	ENSXETG00000015900	cnot1	100	84.239	Xenopus_tropicalis
ENSHCOG00000006501	cnot1	100	92.659	ENSXCOG00000013552	cnot1	100	92.743	Xiphophorus_couchianus
ENSHCOG00000006501	cnot1	100	92.701	ENSXMAG00000006031	cnot1	100	92.785	Xiphophorus_maculatus