EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHCOG00000006538 (Gene tree)
Gene ID: 109527743
Gene Symbol: si:dkey-16l2.16
Alias: -
Full Name: ras-related protein Rab-35-like
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Minus strand
Length: 8578 bases
Position: chrKV880313.1:1831623-1840200
Accession: 109527743
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000004964	MMR_HSR1	PF01926.23	4.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000006160	-	2535	XM_019889817	ENSHCOP00000004964	209 (aa)	XP_019745376	UPI00094F2F43

Gene Model

Click here to download ENSHCOG00000006538's gene model file

Pathways

Pathway ID	Pathway Name	Source
hcq04144	Endocytosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000006538's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHCOG00000006538	si:dkey-16l2.16	84	37.569	ENSHCOG00000005024	rab9b	88	37.017
ENSHCOG00000006538	si:dkey-16l2.16	74	31.613	ENSHCOG00000009757	ran	71	31.613
ENSHCOG00000006538	si:dkey-16l2.16	100	40.465	ENSHCOG00000000985	-	99	40.465
ENSHCOG00000006538	si:dkey-16l2.16	97	35.784	ENSHCOG00000020238	-	89	35.407
ENSHCOG00000006538	si:dkey-16l2.16	100	38.785	ENSHCOG00000000232	rab11al	99	38.785
ENSHCOG00000006538	si:dkey-16l2.16	76	44.025	ENSHCOG00000013095	rab25a	96	37.864
ENSHCOG00000006538	si:dkey-16l2.16	77	40.244	ENSHCOG00000006550	-	79	40.244
ENSHCOG00000006538	si:dkey-16l2.16	76	45.665	ENSHCOG00000003569	rab33ba	74	45.000
ENSHCOG00000006538	si:dkey-16l2.16	74	34.783	ENSHCOG00000002948	dnajc27	59	34.783
ENSHCOG00000006538	si:dkey-16l2.16	57	50.413	ENSHCOG00000010707	rab30	65	50.413
ENSHCOG00000006538	si:dkey-16l2.16	55	32.203	ENSHCOG00000006452	arl4aa	61	32.203
ENSHCOG00000006538	si:dkey-16l2.16	96	36.715	ENSHCOG00000004225	-	86	38.068
ENSHCOG00000006538	si:dkey-16l2.16	67	35.252	ENSHCOG00000013919	rab23	78	34.375
ENSHCOG00000006538	si:dkey-16l2.16	55	30.172	ENSHCOG00000015600	arl3	61	30.172
ENSHCOG00000006538	si:dkey-16l2.16	85	41.667	ENSHCOG00000009133	zgc:101559	76	42.778
ENSHCOG00000006538	si:dkey-16l2.16	55	30.645	ENSHCOG00000019245	rabl3	63	30.645
ENSHCOG00000006538	si:dkey-16l2.16	77	47.561	ENSHCOG00000019732	-	77	47.561
ENSHCOG00000006538	si:dkey-16l2.16	95	36.500	ENSHCOG00000004404	rab41	73	41.558
ENSHCOG00000006538	si:dkey-16l2.16	77	61.111	ENSHCOG00000001137	rab1ab	79	61.491
ENSHCOG00000006538	si:dkey-16l2.16	74	39.375	ENSHCOG00000005802	RAB9A	74	39.375
ENSHCOG00000006538	si:dkey-16l2.16	96	35.821	ENSHCOG00000004662	rab5c	87	35.821
ENSHCOG00000006538	si:dkey-16l2.16	78	35.503	ENSHCOG00000013807	rheb	88	35.503
ENSHCOG00000006538	si:dkey-16l2.16	77	48.765	ENSHCOG00000017123	-	75	48.765
ENSHCOG00000006538	si:dkey-16l2.16	73	30.323	ENSHCOG00000015161	-	74	30.323
ENSHCOG00000006538	si:dkey-16l2.16	95	34.928	ENSHCOG00000020527	rab34a	77	35.577
ENSHCOG00000006538	si:dkey-16l2.16	95	41.709	ENSHCOG00000007187	rab25b	84	40.500
ENSHCOG00000006538	si:dkey-16l2.16	85	43.575	ENSHCOG00000002217	rab18b	84	44.509
ENSHCOG00000006538	si:dkey-16l2.16	80	49.112	ENSHCOG00000007440	rab13	93	49.112
ENSHCOG00000006538	si:dkey-16l2.16	79	32.544	ENSHCOG00000018456	si:ch73-116o1.2	79	31.953
ENSHCOG00000006538	si:dkey-16l2.16	83	42.529	ENSHCOG00000017086	RAB15	81	42.529
ENSHCOG00000006538	si:dkey-16l2.16	98	40.385	ENSHCOG00000000954	-	96	39.604
ENSHCOG00000006538	si:dkey-16l2.16	77	40.000	ENSHCOG00000013130	rab6bb	79	40.000
ENSHCOG00000006538	si:dkey-16l2.16	73	32.258	ENSHCOG00000018554	rasd4	74	32.258
ENSHCOG00000006538	si:dkey-16l2.16	78	39.645	ENSHCOG00000016322	RAB7A	81	39.645
ENSHCOG00000006538	si:dkey-16l2.16	98	42.308	ENSHCOG00000005652	rab11a	96	42.308
ENSHCOG00000006538	si:dkey-16l2.16	78	59.509	ENSHCOG00000019468	rab1ba	81	59.877
ENSHCOG00000006538	si:dkey-16l2.16	78	42.683	ENSHCOG00000013180	-	76	42.683
ENSHCOG00000006538	si:dkey-16l2.16	96	33.816	ENSHCOG00000004086	rab9a	97	33.816
ENSHCOG00000006538	si:dkey-16l2.16	98	51.942	ENSHCOG00000010023	-	99	51.942
ENSHCOG00000006538	si:dkey-16l2.16	76	45.912	ENSHCOG00000014428	rab2a	75	45.912
ENSHCOG00000006538	si:dkey-16l2.16	73	33.766	ENSHCOG00000003667	rhebl1	83	33.766
ENSHCOG00000006538	si:dkey-16l2.16	73	39.610	ENSHCOG00000014711	rab6ba	74	39.610
ENSHCOG00000006538	si:dkey-16l2.16	78	42.073	ENSHCOG00000019224	rab14	76	42.073
ENSHCOG00000006538	si:dkey-16l2.16	69	45.695	ENSHCOG00000012834	-	64	45.695
ENSHCOG00000006538	si:dkey-16l2.16	98	41.148	ENSHCOG00000002423	rab11bb	96	41.148
ENSHCOG00000006538	si:dkey-16l2.16	83	34.857	ENSHCOG00000011080	kras	88	35.119
ENSHCOG00000006538	si:dkey-16l2.16	74	40.645	ENSHCOG00000001145	rab22a	83	39.130
ENSHCOG00000006538	si:dkey-16l2.16	98	36.744	ENSHCOG00000015692	si:dkey-34d22.5	97	36.019
ENSHCOG00000006538	si:dkey-16l2.16	91	44.898	ENSHCOG00000004726	rab33a	73	46.821
ENSHCOG00000006538	si:dkey-16l2.16	95	40.394	ENSHCOG00000003981	RAB39B	77	46.951
ENSHCOG00000006538	si:dkey-16l2.16	77	44.172	ENSHCOG00000012376	rab12	67	44.172

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSAPOG00000008263	si:dkey-16l2.16	100	93.301	Acanthochromis_polyacanthus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSAOCG00000016825	si:dkey-16l2.16	100	93.780	Amphiprion_ocellaris
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSAPEG00000006500	si:dkey-16l2.16	100	93.780	Amphiprion_percula
ENSHCOG00000006538	si:dkey-16l2.16	100	94.258	ENSATEG00000019238	si:dkey-16l2.16	100	94.258	Anabas_testudineus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSACLG00000018721	si:dkey-16l2.16	100	93.301	Astatotilapia_calliptera
ENSHCOG00000006538	si:dkey-16l2.16	100	94.737	ENSAMXG00000038243	si:dkey-16l2.16	100	94.737	Astyanax_mexicanus
ENSHCOG00000006538	si:dkey-16l2.16	56	96.610	ENSCSEG00000009988	si:dkey-16l2.16	90	96.610	Cynoglossus_semilaevis
ENSHCOG00000006538	si:dkey-16l2.16	100	92.823	ENSCVAG00000003537	si:dkey-16l2.16	100	92.823	Cyprinodon_variegatus
ENSHCOG00000006538	si:dkey-16l2.16	100	91.866	ENSDARG00000037967	si:dkey-16l2.16	99	94.915	Danio_rerio
ENSHCOG00000006538	si:dkey-16l2.16	99	86.058	ENSELUG00000023247	si:dkey-16l2.16	99	85.577	Esox_lucius
ENSHCOG00000006538	si:dkey-16l2.16	58	93.388	ENSFHEG00000000767	si:dkey-16l2.16	78	93.388	Fundulus_heteroclitus
ENSHCOG00000006538	si:dkey-16l2.16	77	83.230	ENSGMOG00000015174	si:dkey-16l2.16	98	83.230	Gadus_morhua
ENSHCOG00000006538	si:dkey-16l2.16	100	87.081	ENSGAFG00000005388	si:dkey-16l2.16	100	87.081	Gambusia_affinis
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSGACG00000014915	si:dkey-16l2.16	98	93.780	Gasterosteus_aculeatus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSHBUG00000019261	si:dkey-16l2.16	100	93.780	Haplochromis_burtoni
ENSHCOG00000006538	si:dkey-16l2.16	100	90.431	ENSKMAG00000003494	si:dkey-16l2.16	100	90.431	Kryptolebias_marmoratus
ENSHCOG00000006538	si:dkey-16l2.16	100	94.258	ENSLBEG00000007681	si:dkey-16l2.16	100	94.258	Labrus_bergylta
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSMAMG00000019230	si:dkey-16l2.16	100	93.301	Mastacembelus_armatus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSMZEG00005002081	si:dkey-16l2.16	100	93.301	Maylandia_zebra
ENSHCOG00000006538	si:dkey-16l2.16	99	94.175	ENSMMOG00000020140	si:dkey-16l2.16	97	94.175	Mola_mola
ENSHCOG00000006538	si:dkey-16l2.16	100	91.866	ENSMALG00000014727	si:dkey-16l2.16	99	91.866	Monopterus_albus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSNBRG00000008930	si:dkey-16l2.16	100	93.780	Neolamprologus_brichardi
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSONIG00000009443	si:dkey-16l2.16	100	93.301	Oreochromis_niloticus
ENSHCOG00000006538	si:dkey-16l2.16	100	89.474	ENSORLG00000001098	si:dkey-16l2.16	99	86.603	Oryzias_latipes
ENSHCOG00000006538	si:dkey-16l2.16	100	89.474	ENSORLG00020000867	si:dkey-16l2.16	99	86.603	Oryzias_latipes_hni
ENSHCOG00000006538	si:dkey-16l2.16	100	86.124	ENSOMEG00000015474	si:dkey-16l2.16	100	87.081	Oryzias_melastigma
ENSHCOG00000006538	si:dkey-16l2.16	100	90.909	ENSPKIG00000005686	-	100	90.909	Paramormyrops_kingsleyae
ENSHCOG00000006538	si:dkey-16l2.16	100	79.426	ENSPKIG00000018888	si:dkey-16l2.16	100	79.426	Paramormyrops_kingsleyae
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSPMGG00000000751	si:dkey-16l2.16	100	93.780	Periophthalmus_magnuspinnatus
ENSHCOG00000006538	si:dkey-16l2.16	100	87.560	ENSPFOG00000004746	si:dkey-16l2.16	100	87.560	Poecilia_formosa
ENSHCOG00000006538	si:dkey-16l2.16	100	87.081	ENSPLAG00000021043	si:dkey-16l2.16	100	87.081	Poecilia_latipinna
ENSHCOG00000006538	si:dkey-16l2.16	100	87.560	ENSPMEG00000007165	si:dkey-16l2.16	100	87.560	Poecilia_mexicana
ENSHCOG00000006538	si:dkey-16l2.16	100	87.081	ENSPREG00000005323	si:dkey-16l2.16	100	87.081	Poecilia_reticulata
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSPNYG00000009490	si:dkey-16l2.16	100	93.780	Pundamilia_nyererei
ENSHCOG00000006538	si:dkey-16l2.16	100	94.258	ENSPNAG00000018986	si:dkey-16l2.16	100	94.258	Pygocentrus_nattereri
ENSHCOG00000006538	si:dkey-16l2.16	99	78.365	ENSSFOG00015006414	-	99	75.962	Scleropages_formosus
ENSHCOG00000006538	si:dkey-16l2.16	100	91.388	ENSSFOG00015021448	-	100	91.388	Scleropages_formosus
ENSHCOG00000006538	si:dkey-16l2.16	100	90.909	ENSSMAG00000011769	si:dkey-16l2.16	94	90.909	Scophthalmus_maximus
ENSHCOG00000006538	si:dkey-16l2.16	100	94.737	ENSSDUG00000005719	si:dkey-16l2.16	100	94.737	Seriola_dumerili
ENSHCOG00000006538	si:dkey-16l2.16	100	94.737	ENSSLDG00000003631	si:dkey-16l2.16	100	94.737	Seriola_lalandi_dorsalis
ENSHCOG00000006538	si:dkey-16l2.16	100	93.780	ENSSPAG00000006302	si:dkey-16l2.16	100	93.780	Stegastes_partitus
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSTRUG00000025076	si:dkey-16l2.16	100	93.301	Takifugu_rubripes
ENSHCOG00000006538	si:dkey-16l2.16	100	93.301	ENSTNIG00000011300	si:dkey-16l2.16	100	93.301	Tetraodon_nigroviridis
ENSHCOG00000006538	si:dkey-16l2.16	100	87.560	ENSXMAG00000021767	si:dkey-16l2.16	100	87.560	Xiphophorus_maculatus