EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHCOG00000006849 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD-associated factor 4a
Gene Type: protein_coding
Species: Hippocampus_comes
Status: putative
Strand: Plus strand
Length: 6818 bases
Position: chrKV880525.1:166694-173511
Accession: ZDB-GENE-030131-9003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHCOP00000020538	RRM_1	PF00076.22	3.8e-08	1	1
ENSHCOP00000005120	RRM_1	PF00076.22	4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHCOT00000005931	-	2178	-	ENSHCOP00000020538	725 (aa)	-	-
ENSHCOT00000005899	-	2247	-	ENSHCOP00000005120	748 (aa)	-	-

Gene Model

Click here to download ENSHCOG00000006849's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHCOG00000006849's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHCOG00000006849	scaf4a	62	69.907	ENSAPOG00000002946	scaf4a	57	91.912	Acanthochromis_polyacanthus
ENSHCOG00000006849	scaf4a	83	67.727	ENSAMXG00000008585	scaf4a	54	85.294	Astyanax_mexicanus
ENSHCOG00000006849	scaf4a	58	88.889	ENSCSEG00000019549	scaf4a	56	82.667	Cynoglossus_semilaevis
ENSHCOG00000006849	scaf4a	57	75.182	ENSELUG00000002779	SCAF8	50	63.576	Esox_lucius
ENSHCOG00000006849	scaf4a	54	89.630	ENSHBUG00000007920	scaf4a	56	89.706	Haplochromis_burtoni
ENSHCOG00000006849	scaf4a	67	62.562	ENSKMAG00000005742	scaf4b	51	63.441	Kryptolebias_marmoratus
ENSHCOG00000006849	scaf4a	79	82.270	ENSLOCG00000009162	scaf4a	58	85.294	Lepisosteus_oculatus
ENSHCOG00000006849	scaf4a	53	91.852	ENSMAMG00000013223	scaf4a	56	91.912	Mastacembelus_armatus
ENSHCOG00000006849	scaf4a	51	77.576	ENSMALG00000013825	scaf4a	70	76.961	Monopterus_albus
ENSHCOG00000006849	scaf4a	82	89.630	ENSONIG00000004687	scaf4a	69	82.759	Oreochromis_niloticus
ENSHCOG00000006849	scaf4a	51	76.623	ENSONIG00000005610	scaf4b	57	77.206	Oreochromis_niloticus
ENSHCOG00000006849	scaf4a	56	88.235	ENSORLG00000004384	scaf4a	55	83.673	Oryzias_latipes
ENSHCOG00000006849	scaf4a	78	88.235	ENSORLG00020011857	scaf4a	55	83.673	Oryzias_latipes_hni
ENSHCOG00000006849	scaf4a	77	88.235	ENSORLG00015017880	scaf4a	56	83.673	Oryzias_latipes_hsok
ENSHCOG00000006849	scaf4a	80	89.706	ENSOMEG00000014482	scaf4a	54	89.706	Oryzias_melastigma
ENSHCOG00000006849	scaf4a	67	78.894	ENSSMAG00000017901	scaf4a	57	91.176	Scophthalmus_maximus
ENSHCOG00000006849	scaf4a	87	92.593	ENSSDUG00000012918	scaf4a	58	92.647	Seriola_dumerili
ENSHCOG00000006849	scaf4a	79	87.500	ENSTNIG00000009945	scaf4a	52	83.908	Tetraodon_nigroviridis